Pseudogenes for contig
| Features | Start | End | Frame Joins | Pseudo Tag | Seq | GenePRIMP Notes |
|---|---|---|---|---|---|---|
| or0103 - or0104, or0104 | 112989 | 113909 | putative pseudogene |
C
T
G
A
G
G
A
G
C
G
G
G
C
T
C
C
G
G
A
C
G G C G T G G A G C C T C G G A G T G A T C A T C T T C C C G G T A A C G C T C G T C G T C T C T T T T C T G C G C T A C A C G C C G C T C T T C G A C G C G G C G G T C T C G T C C C T T A C G C C G G T G A T G G G G C T C T T C G G G C T T C C G G G C G A G G C G G C G C T C C C G C T C G T G C T C G G G A A C T T C C T G A A C C T G T A C G C G G C G A T C G G G G C G A T G C T C G C G A T G G A C C T G A C G G T C A A G C A G G T C T T T A T C C T C G C G C T G A T G C T C T C G T T C T C G C A C G G G C T C C C G G T G G A G A G C G C G G T C T G C A A G C G C A T C G G G G C G G G G T T C T G G A T C G T T A C G G G C T T C C G C G T G G C G C T C G C G C T C G C G G C G G G C C T C C T C G T G A A C C T T C T C T G G C G G G G C G G C T C G G A G C C G G C G A G C T A C G G G C T C G T C G C C C C C G C G C A G G C C G A G C C G G A G G G C T T C T T C G A G G T C G C T G C G G C G G C G T T T G G A G C G G C G T T C T T C G G G G T C G T G C A G A T C T C C C T G A T C G T C C T C G C G G T G A T G T T C G T T A T C C A G A T C C T C A A G G A C C T C G G C G C G C T C G G C C T C T T T G C C C G C A T G A C G A A G C C G C T C C T C A A G C C G C T C G G G A T C T C A T C G C G C G G C T C G G T A A C G A T G G C G G G A G G T C T C G T C T T C G G C C T C G C C T T C G G G G C G G G G A T T A T C C T C G A A C A G G C C C G C G A G C A C G A C T T C T C G C G G A G G G A G A T C A C C C T G A T A G C C C T G T T T C T G T G C G C C T G C C A C G C C G T T A T C G A G G A C A C C C T G A T C T T T A T C C C C C T C G G C A T C A A C G T C T T G C C G C T G C T C G T G A T C C G C C T C G T A A C G G C C G T C G T C C T T G T A G C C C T C A T A G C T G C C C T C T G G A A G G A A A C C T C C G C A A C C T C C A A A A C G C C A G T T G T C A A C A A A G A T T G A
L
R
S
G
L
R
T
A
W
S
L
G
V
I
I
F
P
V
T
L
V V S F L R Y T P L F D A A V S S L T P V M G L F G L P G E A A L P L V L G N F L N L Y A A I G A M L A M D L T V K Q V F I L A L M L S F S H G L P V E S A V C K R I G A G F W I V T G F R V A L A L A A G L L V N L L W R G G S E P A S Y G L V A P A Q A E P E G F F E V A A A A F G A A F F G V V Q I S L I V L A V M F V I Q I L K D L G A L G L F A R M T K P L L K P L G I S S R G S V T M A G G L V F G L A F G A G I I L E Q A R E H D F S R R E I T L I A L F L C A C H A V I E D T L I F I P L G I N V L P L L V I R L V T A V V L V A L I A A L W K E T S A T S K T P V V N K D * |
Maingene=or0104; Extension SUCCEEDED with start of type NONCANSTART; Comments=For manual analysis, pseudo or non-canonical start codon, extended gene length > 80% the length of the second shortest homolog | |
| or0129, or0129 - or0131 | 134867 | 135322 | putative pseudogene |
A
T
G
C
C
C
C
G
G
C
T
A
A
G
C
G
T
G
A
T
G G G A C A C C C C G T A C A T C C G A T C C T G C A G G C G A T A C C C G C G G C C G T T C T T C C G G C C T C G A C C G C G T T C G A C G C G C T C G C G C G G G T C A G C G A G G A C A G C G A G G G G C T G A G C C G C G C C G G G C A C T A T A C C C T G A T C T T T G G T C T G C T C G G A G C C G C C G G A G C C G C C G C G A C C G G A G T G C T C G A C T A C T A C G A G A T C G A G A A C C G T C C C G T G C G G C G G G T C G C G T T G T A C C A C G G A C T C G T G A A C G C G G C C C T G A T C T C C T G C T A C G C G G C C T G C C T C G T G C G C C G G A G A A A G A C G A A G C G C G C C G A C A A C A A G G G G C T C G T C C T C T C T G G C G C G G G G A C G G C T C T G G T C G G T C T C T C C G G C T A C C T C G G A G G T G A G C T T G T C T A T G A G C A C G G C G T C C G G G T C G G G G A G G A C G C G G A C G G C A T C C C C G G A G C C G C C T A G
M
P
R
L
S
V
M
G
H
P
V
H
P
I
L
Q
A
I
P
A
A V L P A S T A F D A L A R V S E D S E G L S R A G H Y T L I F G L L G A A G A A A T G V L D Y Y E I E N R P V R R V A L Y H G L V N A A L I S C Y A A C L V R R R K T K R A D N K G L V L S G A G T A L V G L S G Y L G G E L V Y E H G V R V G E D A D G I P G A A * |
Maingene=or0129; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or0155 | 157361 | 157909 | putative pseudogene |
G
T
G
A
G
A
G
A
G
C
T
T
T
T
C
A
G
C
C
T
C C C G A A C C T C G C G A C C T T C G G G A A C C T C G C C G C C G G G T T C T C G G C G C T C G T T C T C G C C T C G C A G G A G A G C T T C G T G C G G G C T G C G G T A C T T G T C G G G A T C G C G G C G G T C T T C G A C C T G C T C G A C G G C G T C A T T G C G C G C C A G T C G G A G G G G G A G A G C G A G T T C G G G G C G A A C C T C G A C T C C C T G G C G G A C A T C G T C T C G T T C G G G G T C G C T C C C G C G T T C G C G C T C T T T C T G G C C T C T C T T G T C G A G T T C G G C T C G C T C G G T G T A G C G G T C G C G G C G G T C T T T G T C C T G G C C G G G A C G G T G C G G C T C G C G C G G T T C C C G C T C G T C A A G G A C C G G C G G G T C T T T G T C G G G C T G C C C A T A C C G C C A G C C G G G C T C G C T C T C G C C G C G C T C G C G G C C C T C G C G C C G C C G C C G A C C G T C G C G G T C G C G A C C G C G C T C G C G C T C G G G G T T C T G A T G G T A A G C G T C A T T C C C T T C C C G A C C C T C C G G T C T C T C T T C G A G C G C T C C G G C A G T C G C A G C A A G G A G C G T C C C G A G T A G
V
R
E
L
F
S
L
P
N
L
A
T
F
G
N
L
A
A
G
F
S A L V L A S Q E S F V R A A V L V G I A A V F D L L D G V I A R Q S E G E S E F G A N L D S L A D I V S F G V A P A F A L F L A S L V E F G S L G V A V A A V F V L A G T V R L A R F P L V K D R R V F V G L P I P P A G L A L A A L A A L A P P P T V A V A T A L A L G V L M V S V I P F P T L R S L F E R S G S R S K E R P E * |
Maingene=or0155; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or0164 - or0166, or0166 | 170851 | 171681 | putative pseudogene |
G
T
G
A
G
A
G
A
G
A
G
G
T
C
T
C
A
C
C
C
G G A A A A G C A C A G C G C T T C A G A G G A A G G T C G G G A C A C G G C G A G G C T C C T T G A G G T T C C T C C G G C A C C T C C G G T C T G C A T T G C A G G G A T G C A C C G C T C G G G G A C C T C G A C G C T C T C G C A G C T G C T C T A C C G G C T C G G G C T C G A C C T C G G G G A C G A G T C G G A G A T G T T T G C C G G C G A C G A G A G C A A T G C C G A C G G G T A C T T C G A G A A C C G G C G G T T C G T C G C G G T G A G C A A C G A A A T C T T C C G G C T G C G C A G G G G C G G C T G G G A C C T C C C G C C G G A C C T G G A G C C G G G C T G G T T C C G C A A G G A G G A G T T C G C G A A G G T C C G G G A A G A G G C G G C C G C G C T C A T G G A G G A C T T C G C G G G A G G C G G A G C G T G G G G C T G G A A G G A C C C G C G C G C G A C G C T C A C G A T G G G G C T C T G G C T C G A C C T C G C G C C G G A C T T G C G C G T G G T C G C G C C C G T A A G G A A C C C G C T G G A G G T T G C G G C C T C G C T G C G C T C G C G G G G A G C G T C G T C G G T C G A G T T C G G G C T G A A C C T C T G G A C G G T G T A C A A C C G G C G G C T C C T T G A G G A G G T C C C G G A G G G C C A G C T C A T G A T C A C G C A C T A C G A G G C G T T C T T T C G C A G G C C G C A G G A G G A G C T T C G C C G C G T T C T G G A C T T C T G C G G G A T G C A C G C C T C G G A A C A G C T G A T C T C C C T T G T C C G C T C G C G G G T C G T G C G G G G T C T G A G A C A C C A C C T C T A C A C C G C G C A G G A C C T T C T C G A A G C C G A T C C T T C G G G G G A G G T C C G G G A G C T T T A C G C G C A A C T G T G C A A C C T C G C C G G G T G G C C C G C C G A G C G G T A G
V
R
E
R
S
H
P
E
K
H
S
A
S
E
E
G
R
D
T
A
R L L E V P P A P P V C I A G M H R S G T S T L S Q L L Y R L G L D L G D E S E M F A G D E S N A D G Y F E N R R F V A V S N E I F R L R R G G W D L P P D L E P G W F R K E E F A K V R E E A A A L M E D F A G G G A W G W K D P R A T L T M G L W L D L A P D L R V V A P V R N P L E V A A S L R S R G A S S V E F G L N L W T V Y N R R L L E E V P E G Q L M I T H Y E A F F R R P Q E E L R R V L D F C G M H A S E Q L I S L V R S R V V R G L R H H L Y T A Q D L L E A D P S G E V R E L Y A Q L C N L A G W P A E R * |
Maingene=or0166; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or0190, or0190 - or0192 | 204093 | 204560 | putative pseudogene |
T
T
G
A
A
G
T
C
T
T
T
T
C
A
C
C
C
T
G
T
T C A C T C T G T A A G G A A G G T C C G G G T T G C G G T T G C G T C G T T T G C G G C G G C C G G G C T T A T G G C G G T C G G G G C C G T G C T C T C G G C C G G A C C G G C G C A G G C C G A G C C G G T G G T G G C G A G C T A C T A C G G G G C G G A G C T T G C C G G C A G C C C G A C G G C G A G C G G C G T T C C G T T C G A C C C G T C G G C G C T G A C G G C G G C G C A C C C G T C A T T G C C G T T C G G G A C G C A G C T C G A G G T C T G C T A T C A G G G C T G C G T T A C C G T C A C G G T C A A C G A C C G T G G T C C G T T C G T C G A G G G G C G C G G G C T C G A T C T C T C G C A G G G T G C G G C C G A G G C G A T A G G T C T T T A C G G C G T C G A C A C C G T C G A G A T G A A C G T T G T C G G C G G C G C G G A G G C C A C C G G G C A G G C C G C G A C G G A C G C G A G C G C A G C C G G G T A C G G T A C C G G G G C G G A G T A C G G C G T C T A C T A C T A G
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A A A G L M A V G A V L S A G P A Q A E P V V A S Y Y G A E L A G S P T A S G V P F D P S A L T A A H P S L P F G T Q L E V C Y Q G C V T V T V N D R G P F V E G R G L D L S Q G A A E A I G L Y G V D T V E M N V V G G A E A T G Q A A T D A S A A G Y G T G A E Y G V Y Y * |
Maingene=or0190; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or0267, or0267 - or0268 | 293467 | 294243 | pseudogene |
C
G
G
G
C
T
C
T
A
C
T
C
G
A
T
G
C
C
T
T
C C G C A C C T C G T C C G G G A C G T C G G C G A T C C T C A C G G A C A T A G A C G G G A C G C T C G C G C C C A T T A C T T C G A C C C C G G C C G A G G C G G A G G T T C C G G A G G G C A T C C G G G A G A C G C T C G C A A A G C T C A G C G A G G C T T A C C T G C T C G T G G C C G G A G T C A G C G G C A G A G A G C C C T C G G A G G C C C G G G A G C T T G T C G G G C T C A G G A A C A T C G C C T A C T T C G G G A A C C A T G G C C T G G A G C T G C T C C G G G C C T T C G A G G A C G A C G C C G A A G T G G T C C C G G C C G C A G A G C C C T A C T T C G A G C G C A T G C G G G A G C T G G A G C T C C T C G C G C G C G A G G A G C T C G C C C C G C T C G G G G C C T T C G T T C A G G A T A A G G G C A T A G C G G C C G C C G T C C A C T T C C G G A A C G T G C C C G A G G A G G T C G G G G A G C G G T G C G T G A A G T T C G T G A A G G A G C A C G C C G A A C G G C T G G A T C T G G T C A C G G G G A A G G G A C G G G G C G T T A T C G A G G T C A A A C C G C C C G T C G A G G T G G A C A A G G G C A C G G C G T G C C G G C G C C T G A T C G A A G A G G C C G G A C C G A A G C G G G C G A T G T T T C T C G G G G A C G A T G T G T C A G A T C T C G A C G C C T T C C G C G C T C T C G C C G C G A T G C T C G A T G A A G G G A C G C T G G A G C A G G T G G T C C G T G T C G G G G T A G G G G G T C C C G G C G T T C C G G A G G A G G T C G T C T C G G A G T C C G A C C T C G T G G T A G A G G G A C T G G A G G G C G T A A A G A A G C T C C T G C A G G A C C T A A T A C C C T G A
R
A
L
L
D
A
F
R
T
S
S
G
T
S
A
I
L
T
D
I
D G T L A P I T S T P A E A E V P E G I R E T L A K L S E A Y L L V A G V S G R E P S E A R E L V G L R N I A Y F G N H G L E L L R A F E D D A E V V P A A E P Y F E R M R E L E L L A R E E L A P L G A F V Q D K G I A A A V H F R N V P E E V G E R C V K F V K E H A E R L D L V T G K G R G V I E V K P P V E V D K G T A C R R L I E E A G P K R A M F L G D D V S D L D A F R A L A A M L D E G T L E Q V V R V G V G G P G V P E E V V S E S D L V V E G L E G V K K L L Q D L I P * |
Maingene=or0267; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, extend to start of alignment | |
| or0323 - or0324, or0324 | 343000 | 343272 | pseudogene |
A
T
G
A
G
G
C
T
C
T
T
C
C
T
C
G
C
T
G
G
C T G G G G G C T G A C G G C C G T C C T C C T T G C G G C G G G A T T T C T G T T C G G A G G G T T C G G C C G C C A G C G G T C C G G G T C C C G A C C G G C G C T G C C T T C G G G C G T G T A T A G C T G G G C G A C G G G C G T C G T G G T C G G C C T C G C C G T C G G G A C C A C G G A C T G G T C G G C C C C G A G C T T C G T C G G G T G G T G G C A G T T C T G G T G G A C C G T T C C G T T G C T G G C A G C C T A C C T C G G T C T C T C C G G C G C C C T G C G G A G A G A C C G G A G G T A A
M
R
L
F
L
A
G
W
G
L
T
A
V
L
L
A
A
G
F
L
F G G F G R Q R S G S R P A L P S G V Y S W A T G V V V G L A V G T T D W S A P S F V G W W Q F W W T V P L L A A Y L G L S G A L R R D R R * |
Maingene=or0324; Extension SUCCEEDED with start of type NOSTART; Comments=Pseudogene, failed extension, extended gene length<=100aa and < 70% the length of the second shortest homolog Blast report of region is empty | |
| or0342, or0343 | 366287 | 367655 | complement (join (366287..367384, 367386..367655)) | putative pseudogene |
A
T
G
G
A
T
G
T
G
A
T
G
C
G
A
G
G
A
C
T
T G G C G A G G G C G G G G G T T C T G G C A C C T G G C G T G C G G G T G T G G A G A A C C T G A T G C T T C A C T T C A C G C C C T A C T C T G A G G A C T G G G C G A A G C T G C C G G T C A T T G T C T C G G G T G A G G G T G C T T A T G T T A C C G A C G A G C G T G G C A A C A C C T A C A T C G A C G G G C T T G C C G G G C T C T T C A C C A C G C A G G T C G G G C A T G G T C G G G A G G A G C T T G C T G A G G T T G C T G C C G A G C A G A T G A G G G A G C T T G G C T T C T T T C C C A A C T G G T C T T T T C A G C A T C C G A G G A G C C T T G A G C T T G C G C A C A A G A T C G C T T C T A T T G C T C C T G G G G A C T T G A A C T C G A C G T T C T T T G T C T C T A G T G G T T C T G A G G C T G T T G A G A C G G T G A T A A A G C T C T C C C G G C A G T A C C A C A A G G C T A A C G G G G A G C C G G G G C G C T A C A A G G T C A T C T C G C G T G A T G T T G C T T A T C A C G G T A C G A C G A T G G G G G C G C T C T C T G T T A C G G G G C T T C C G G C T T T C A A G G C G C C G T T T G A G C C T T T G C C G G G G G G C T T C T T T C A T G T G A G C A A C A C C C A G C A G G A C C C T G A G G G G G C G G C T G A G G C G A T A G A G C G G G C G A T C G A G G C T G A G G G C T C T G A T C A G G T C G C T G C G G T T A T C C T T G A G C C G G T G C A G A A C G C T G G G G G C T G T C T T G T T C C C C C T C C C G A T T A C T G G A A G A A G G T G C G C G A G A T C T G C G A C C G T C A C G G G G T G T T G C T G G T C T C G G A T G C G G T G A T C T G C G C C T T C G G C A G G C T T G G G G A G T G G T T T G G C A T C G A G C G C T T T G G G G T G G T G C C G G A C A T G A C G A G C T T T G C C A A G G G C G T C A C C T C G G G G T A C T T G C C G A T G G G C G G G G T G G T G G T G A G C G A C C G G A T A G C G A A C A C G C T G C G C G A G C G G G C T C A G A T G T T C A G C C A C G G C T C G A C C T T C G G G G G G C A C C C G G T C T C A A G T G C G G T G G C G C T C A A G A A C A T C G A G A T A A T A G A G C G C G A G G G G C T G C T T G G A C A C G T G C A C G A T C T G G A A G G G C A C T T T G G C G C A G A G C T T G A G C G C A T G G C C G A A G G G C A C C C G A T T G T C C G G G A G G T G A G G G G G A T G G G C T T T T T C T G G G C G G T A G A G A T A A A G C C C G A G C G A G C C G A C G G G A C G C T G C T T C G C G A G G A G G A G T A C C A G A A G T A C T T C A A G G G G G T G T T G A G C C G G G C G C T G C T T G A G G G A G G T C T T A T C T G C C G C T T T G A C G A C A A G G A C G A G C C G G T G A T C C A G T A C T C G C C T G C C C T T G T C T C G G A C C A G G A G G T G C T C T C A A A G A T C G C C G A C A T A A C C G A C C G G G C G C T C A C C G A G C T T G A G C G A C A G C T C G G T T A C C G T A G C T A G
M
D
V
M
R
G
L
G
E
G
G
G
S
G
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A
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E N L M L H F T P Y S E D W A K L P V I V S G E G A Y V T D E R G N T Y I D G L A G L F T T Q V G H G R E E L A E V A A E Q M R E L G F F P N W S F Q H P R S L E L A H K I A S I A P G D L N S T F F V S S G S E A V E T V I K L S R Q Y H K A N G E P G R Y K V I S R D V A Y H G T T M G A L S V T G L P A F K A P F E P L P G G F F H V S N T Q Q D P E G A A E A I E R A I E A E G S D Q V A A V I L E P V Q N A G G C L V P P P D Y W K K V R E I C D R H G V L L V S D A V I C A F G R L G E W F G I E R F G V V P D M T S F A K G V T S G Y L P M G G V V V S D R I A N T L R E R A Q M F S H G S T F G G H P V S S A V A L K N I E I I E R E G L L G H V H D L E G H F G A E L E R M A E G H P I V R E V R G M G F F W A V E I K P E R A D G T L L R E E E Y Q K Y F K G V L S R A L L E G G L I C R F D D K D E P V I Q Y S P A L V S D Q E V L S K I A D I T D R A L T E L E R Q L G Y R S * |
Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, more than 80% of the length of the second shortest homolog |
| or0364 - or0365, or0365 | 390045 | 390314 | pseudogene |
A
T
G
G
G
C
A
T
A
C
T
C
G
A
G
A
T
G
T
T
G C T C G T C A C G G G A C T C G C T G T T C T G C C G A C A G G T C T C A T T G C C C T C G G C A C T G C C A T G C T C G G A G C C C C G G A C T T C G G C A A G G G C T T T G G C G G G A T G A G C G T T G T G C T C G G A G T G G T T G G G G T C G C A G C G G C A T G T G T C C T T C T G G T G G A T A C C G C C T C T C C A A T C G C C G C G G T C G G C G G C G T C T T C G C A C T C A T C G T C T T C C C T C T C G T C A T G G G G T G G A A G G T T T G C C G T T T G T C G C G G G G G G C G T A G
M
G
I
L
E
M
L
L
V
T
G
L
A
V
L
P
T
G
L
I
A L G T A M L G A P D F G K G F G G M S V V L G V V G V A A A C V L L V D T A S P I A A V G G V F A L I V F P L V M G W K V C R L S R G A * |
Maingene=or0365; Extension FAILED; Comments=Pseudogene, failed extension, extended gene length<=100aa and < 70% the length of the second shortest homolog Blast report of region is empty | |
| or0368, or0369 | 392855 | 393760 | join (392855..393262, 393262..393609, 393609..393674) | pseudogene |
a
t
g
g
t
c
t
t
g
c
c
c
g
c
g
a
c
g
c
t
g a a g a a g c t c a c c g a a c t t c a c g t c c a g g g t c t g t a c c g c t c c a t g c t c g g t g g g g g a c t c t c c g t c c g c a c c g t c c g c t a c g c c c a c g c g g t c c t c c g c c g c g t g c t c a a g c a g g c g g t c c a c t g g a t g c t t g c c c c g c g c a a c t c c t g c g a c g c c g c c g a c c c g c c c a a g g t c c a g a g g g a c g a g a t g c g a c c c c t c g a c c g g g a g c a g g c c c g c a g g g t g c t g g a c a c c g c c g c a g a g t g c a g c c c g g a t a g a g c g c c g g a c a g g t t c c a c g c c c t c t a c g t c c t c g c c g t c c a c g t c g g g a t g c g c c c c g g t g a g t t c c t c a c c c t c a a g t g g g a g g a c g t a g a c c t c g a a g c c g g g g t c c t g a g c a t t a a c c g c g c c c t g a g c c a t g g c c g g c g a g t t c a c c g c t c c a a g a c c g c g a a g a g c c g g c g a c g c a t c c g g c c c a c c g c c g g c g c c g t c g c c g c c c t g a g a g c c c a c c g c a a g c g c c t g a g g g a a g a g c a c a t g c g c t t c t t c t c t c t c t g g c g g g a t c a c g g c c t c g t c t t c c c c t c c a c c g t c g g t a c g c c c c t c a a c c a c c g c a a c c t g g c c c g a g c c t t c a a g g a c c t g a t a a a g c g c g t c g g g c t g c c c g a g a g c a c c c g g c t c t a c g a c c t c c g g c a c a c c t g c g c c a c c c t g c t c c t c g c c a g a g a t g t c c a c c a c a a g t a c g t c c a g g a g c t t c t c g g c c a c g c c a g c a t c a c c c t c c a t g c c t a c t c c c a c g t c c t g c c c g g c a t g g a c g g c a g c g c g g c c t c t g c g g t g g a c g a a g c g c t g
M
V
L
P
A
T
L
K
K
L
T
E
L
H
V
Q
G
L
Y
R
S M L G G G L S V R T V R Y A H A V L R R V L K Q A V H W M L A P R N S C D A A D P P K V Q R D E M R P L D R E Q A R R V L D T A A E C S P D R A P D R F H A L Y V L A V H V G M R P G E F L T L K W E D V D L E A G V L S I N R A L S H G R R V H R S K T A K S R R R I R P T A G A V A A L R A H R K R L R E E H M R F F S L W R D H G L V F P S T V G T P L N H R N L A R A F K D L I K R V G L P E S T R L Y D L R H T C A T L L L A R D V H H K Y V Q E L L G H A S I T L H A Y S H V L P G M D G S A A S A V D E A L |
Comments=Pseudogene, > 2 frameshifts in gene |
| or0374 - or0376, or0376 | 398646 | 399551 | putative pseudogene |
G
T
G
C
G
G
C
C
T
G
A
G
C
G
G
C
C
G
G
G
G A C G A G A A G A A G C T T A G G G A C C G G G A G A G C C C C G G A G G A G G C G A G A A G A G T G A C G G A C G T G A T C T C A C A G T A C A T G G A G A A G G T C A G G C G G G G C A G G C T G C T C G G C C C G G A G G A G G A G G T C T C G C T T G C C A G G A G G T C C C G G C G G G G G G A C C G G T C G G C G A G A A G G A A G C T T A T C G A G T C G A A C C T G C G G C T C G T T A T C T C G A T C G C C A A G A A G T A C C G C G G C C G G G G A C T C G A C T T C G A G G A C C T T A T C C A G G A G G G C A A C G C C G G G C T T A T C C G C G C C G T C G A G A A G T T C G A C C C G G A G C G A G G C T T C C G C T T T T C G A C G T A C G C G A C G T G G T G G A T A C G T C A G G C C G T T A C C C G C G C C G T T G C G G A C C A C G C C C G C T C C A T C C G G C T T C C G G C G C A C G T C G T T G A T G C G A T C T A C C G C C T G A G A A G G A C C G A G A G C G C G C T C G G G A T C G A G C T T G G T C G C G A G G C G A C G G A G G A C G A G G T C G C C C G G C G G C T T G A G G T C C C G G T C G A A G A G G T C C G G C G G C T C C G G G A G A T C A G C C A G C C G A T C A G C A G C A T G A A C G C C C G C C T C G G G C G C G A C G A G G A C G C C T C G G A G G T C G G G G A G C T T T T C C A C G A C G A G A C C T C C C G C T C C G A G T A C T T C G G G G T C G A G T C C G G C C C G T G G G T C G C G A A G C T C C G C G A G G C C A T C C G T G C C C T T C C C G A G C G C G A G G C C C G G A T A C T C C G G A T G C G T C A C G G C T T C G A A G A C G G C G G C A C C C G G A C C C T T A G A G A A G T C T C C G A A G A G C T C G G C A T C T C G C A G G A G C G G G C T C G T C A G G T C G A G A A G A A G G C G C T G C G C A C G A T C C G C T C C G G A C G T T A C G C C A G C A C C C T G C G C G G C G C T C T G C C C G A G G C C G T C T A G
V
R
P
E
R
P
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R
R
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L
G
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G
R
A
P
E
E
A R R V T D V I S Q Y M E K V R R G R L L G P E E E V S L A R R S R R G D R S A R R K L I E S N L R L V I S I A K K Y R G R G L D F E D L I Q E G N A G L I R A V E K F D P E R G F R F S T Y A T W W I R Q A V T R A V A D H A R S I R L P A H V V D A I Y R L R R T E S A L G I E L G R E A T E D E V A R R L E V P V E E V R R L R E I S Q P I S S M N A R L G R D E D A S E V G E L F H D E T S R S E Y F G V E S G P W V A K L R E A I R A L P E R E A R I L R M R H G F E D G G T R T L R E V S E E L G I S Q E R A R Q V E K K A L R T I R S G R Y A S T L R G A L P E A V * |
Maingene=or0376; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo, good start found, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or0423 - or0424, or0424 | 451734 | 452321 | putative pseudogene |
G
T
G
A
T
A
A
A
G
G
T
G
C
T
T
G
T
C
C
T
G T A C G C A C T C C T G C G G G A G G T G G A C G C A G G G A C G A T C T C G C T C G A T G A A C G G C T C G G A G G C G G C A C G G T T C G C T C G C T C T C G G G A G C C A T G A T C T C A G A T A G C G A T A A T G T A G C G A C C A A C C T C C T T G T A G A C A G G C T A G G C T T T G A G C G G A T C A A C G C A G C A G C C C A A G A C C T C G G C C T C A A G G A G A C T C G C C T T G A G C G C C A C A T G C T C G A C T T C G A C G C G C A G G C T G C C G G A A G G G A A A A C T A C A C T T C G G C C C G G G A C A C C G C G G C G C T G C T C G C G G A G A T C T G G C A T G G C A G G A C T C T C T C G C C G G A G T C G A G G G A G C T G G C C C T C T C A A C C C T C G A A C T C C A G A C C C G A A G G G C C A A G A T C C C C G C C G C C C T T C C T G C C G G C A C G C G G G T C G C C A A C A A G A C C G G C G A G C T C C C G G G C G T C G A G C A C G A C G C G G C G A T C G T C C T C G T A C C G G A C C G T T C C T T C G T A C T C G T A A C T C T C A C G A G C G G C G A C C C C G A C T C G G G C G T C G A G G C G A T C C A C G C T G C T A C A G A T C T C A C C T A C C G C A C C A T G A C C T C T T C C C C G T A G
V
I
K
V
L
V
L
Y
A
L
L
R
E
V
D
A
G
T
I
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L D E R L G G G T V R S L S G A M I S D S D N V A T N L L V D R L G F E R I N A A A Q D L G L K E T R L E R H M L D F D A Q A A G R E N Y T S A R D T A A L L A E I W H G R T L S P E S R E L A L S T L E L Q T R R A K I P A A L P A G T R V A N K T G E L P G V E H D A A I V L V P D R S F V L V T L T S G D P D S G V E A I H A A T D L T Y R T M T S S P * |
Maingene=or0424; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or0425 - or0426 | 453947 | 454294 | pseudogene, missed gene |
C
T
C
G
C
C
C
G
G
C
T
T
G
C
A
G
A
A
G
A
G C C C T T C T G C T A C C T G A C G A C C A C G G G C C G G G T A A C G G G G A G G C C G C A C G A G A T C G A G A T C T G G T T C G C C C T C G T C C C C G A G C G A C G C G T C C T C T A C G T T C T C T C C G G C G G G C G C G A C C G C T C G G A C T G G G T C A G G A A C C T G C T G C G C G A G C C G C G C C T C A C C C T G A G C A T C T C C G G C G T C G C C T T C C G G G G A A A A G C C C G C T T T G T A G A G G G C A G G G A C G A A G A C C A G A T C G C C C G G G A C C T C C T T A T A C A G A A G T A C G A G A G C G C C C C C G G G A G C C T G T C G A G C T G G C G C G A G C G G T C G C T C C C G A T C G C G A T A G A C C T C G C C T G A
L
A
R
L
A
E
E
P
F
C
Y
L
T
T
T
G
R
V
T
G
R P H E I E I W F A L V P E R R V L Y V L S G G R D R S D W V R N L L R E P R L T L S I S G V A F R G K A R F V E G R D E D Q I A R D L L I Q K Y E S A P G S L S S W R E R S L P I A I D L A * |
Comments=Pseudogene, start/stop is absent | |
| or0472 - or0473, or0473 | 508356 | 509168 | putative pseudogene |
G
T
G
G
A
G
G
A
G
G
G
C
C
G
G
T
G
G
C
T
G A G C C G G G A G G G G G T G C T C G G G C T C G G G A C G T C G C T C G C G C G C G A G G T G G T G G T C C T C G A G G A G G T A G A C T C G A C G C A G C G C G T C G C G C G G G A G C T G G C C G A G G G A G G G G C G C C C G A G G G G A C G A T C G T T C T C G C G C G G G T G C A G C T C G G G G G T A A G G G G A G G C T C G G G C G C G A G T G G G G C T C G C C G C C C G G A G G A C T C T G G A T G T C G C T C G T C C T C A G G C C G G A G T T C G A G G C C C G G T T C G C G C C G A G G A T C A C C C A G A T C T C C G C C G T C G C G G T C G C A A G G G C G C T T A T C G G G C T C G G G G T T C C G G C G A A G G T C A A G T G G C C G A A C G A C G T T C T T G T C G G C G G G A G A A A G G T C T G C G G C A T C C T T G C C G A G T C G A G C C T G A G G C C G A C G C C C G C A G G G A C T C T T C T G G A G T A C G T C T T G C T C G G G A T C G G G T T G A A C G T C A A C G T C G A G C C G G A G G A C C T C G T C G T C T T C G G G G A C C G G G C G A C G A C G G T G A G G G A G T C G C T C G G A C G C G A G G T G G A C C T G C T C G A T C C C C T G G C T C G C A T C C T G C G G G A A C T T G A G A C C G G G C T C C C G G A C G C C C G G A G C T T C T C C C G G A C G C G G A A G G A C C T C A G G A G C C T G A G C C A C A C C C T C G G T C G G C A G G T C C G G G T G G C G C G T T C G G G T G G T G C G G T C G A G G G G C T C G C G G T C G A C A T A A C G G C C G A G G G C G C G C T C G T C C T C C A G A C G G A G G G C G G G A T G G T C G A G C T C T T C G A G G G G G A T G T C G A G A A C C T G C G G G A C C G G C C T G A A G G G C A G C C T C G C T A G
V
E
E
G
R
W
L
S
R
E
G
V
L
G
L
G
T
S
L
A
R E V V V L E E V D S T Q R V A R E L A E G G A P E G T I V L A R V Q L G G K G R L G R E W G S P P G G L W M S L V L R P E F E A R F A P R I T Q I S A V A V A R A L I G L G V P A K V K W P N D V L V G G R K V C G I L A E S S L R P T P A G T L L E Y V L L G I G L N V N V E P E D L V V F G D R A T T V R E S L G R E V D L L D P L A R I L R E L E T G L P D A R S F S R T R K D L R S L S H T L G R Q V R V A R S G G A V E G L A V D I T A E G A L V L Q T E G G M V E L F E G D V E N L R D R P E G Q P R * |
Maingene=or0473; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or0479 - or0480 | 516170 | 516475 | pseudogene, missed gene |
T
T
G
C
A
G
C
G
C
G
G
G
C
C
C
T
T
C
T
C
G G G C C A T C T T C G G C G T A A A G T A A C G C C C C G G G C A T T A C G T C T C C A G C C C T T C T C C G G C A C C T T C T C T T T C C T T G C C A T A G A G T C G T G C T C C G T C C C C G G T G A C G A G G G G G C G G T C A G C G C G T C G C A G G C T C G C T C G T T C G C A G G C G T T C G A C G C A C G G G G A T C T C C C G C G C C C T C T G C A T C T C G G A G C G C A C G G T T C A G G A C C A C C T G A A G A G C G T C T T C G C C A A G G T C G G G G T G A G A A G C C G G C G C G A G C T T C T G A G G G G G C T C T T C T T C G A G C A G G C C T T G C C T
L
Q
R
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L Q P F S G T F S F L A I E S C S V P G D E G A V S A S Q A R S F A G V R R T G I S R A L C I S E R T V Q D H L K S V F A K V G V R S R R E L L R G L F F E Q A L P |
Comments=Pseudogene, start/stop is absent | |
| or0499, or0499 - or0501 | 539163 | 540050 | putative pseudogene |
A
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A
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G T T C C T G A G G A A C C T C T T C G A C C C C C T C T T C G A C G C C C T C G G G T G G C T G C T C C T C T C C T T C C A C G A C C T C G G A G C G C C G T G G T G G C T C T C C A T C G T G C T G C T C A C C G T C T G C G T G A G G A C G G T C C T T C T G C C G C T C A C C G T G C G C C A G A C A A A G A G C A T G C G C G C C A T G C A G G T G C T C C G T C C C G A G A T G G A C G C C A T C C G C G A G C G G T A C A A G G A C G A G C C G C A G C G G A T G C A G C A G G A G A T G A T G A A G C T C T A C C A G G A G C G C C G C G T C A A C C C C C T C G G G G G C T G C C T C C C G G T G C T C G T G C A G C T C C C G A T C T T C A T G G T G C T G T A C T T C A C G A T A A A A G A G T T C G A G A C G C T T G A G A G C T T C A G G A C C G G C G G G C T C T T C T G G T T T A C G G A C C T C A C G C A G G C C G A C C C G T A C T T C C T G C T G C C C G T G A T C T A C G T C G G C A C G A T G A T G G C C G C T C A G G A G G T A A C G C T C A G G A A C A C C C C G A T G C A G G C G C A G C A G A A G A T G A T C A T G C G C T T C C T G C C G G T C G T C T T C G G C T T C T T T C T T G C G G G T T T C C C G G C C G G A C T G C T C G T G T A C T G G A T C G C C T C G A A T A T A A T C T C T T T T G T T C A G A A C G T C G C C A T C T A C C G G C T C T A C C C G G T C C C C G A C C A C A C C C C G A A G G A G A G G T C C G A T T C G G A C G C C G C A G G G G A C G G G A A G C C C A C A G C G G A C A G T C A G A C G G G C G A C C G T A C G G T T A C C C G T A C G G G T G A C C G G G C A G G C A C G A A C G G C A G G C C G A C C G G A A A G T C C G G C G G C A C C G G C T C G A C C T T C A C G C C A C A G A A G C A G A C C C C G C A A A A G T C G A C C A A A C G C C G C A A A A A G A A G A A G A A C C G C C G C T A G
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G W L L L S F H D L G A P W W L S I V L L T V C V R T V L L P L T V R Q T K S M R A M Q V L R P E M D A I R E R Y K D E P Q R M Q Q E M M K L Y Q E R R V N P L G G C L P V L V Q L P I F M V L Y F T I K E F E T L E S F R T G G L F W F T D L T Q A D P Y F L L P V I Y V G T M M A A Q E V T L R N T P M Q A Q Q K M I M R F L P V V F G F F L A G F P A G L L V Y W I A S N I I S F V Q N V A I Y R L Y P V P D H T P K E R S D S D A A G D G K P T A D S Q T G D R T V T R T G D R A G T N G R P T G K S G G T G S T F T P Q K Q T P Q K S T K R R K K K K N R R * |
Maingene=or0499; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or0537, or0537 - or0538 | 573828 | 573992 | pseudogene |
A
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G
A
A
G
A
C
G
C
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G
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A
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T A T C T T T G T T G T C G T G G T C G G T T A C A T C C T G C T C A C G T C C G G G C T C T C G G G A C T C G T C G A G G T G A C T T C C T C G C T G T T C G G T G C G T T C T C C G A T G C T C T G T C G C C G C A C G T T A C G G A G G T T A T C C T C G A T G C T G C G G A G C A G T A G
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G L S G L V E V T S S L F G A F S D A L S P H V T E V I L D A A E Q * |
Maingene=or0537; Extension SUCCEEDED with start of type NOSTART; Comments=Pseudogene, failed extension, extended gene length<=100aa and < 70% the length of the second shortest homolog Blast report of region is empty | |
| or0639, or0639 - or0640 | 684972 | 685817 | pseudogene |
G
T
G
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T
C
G
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G
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A
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C
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A
C
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C C C C G G A G T C T C G G C C C T C G T G A G G C T T C G G G A G G C C G G C A C A A A G C T C T C G G T C G A C G A C T T C G G G A C C G G C T A C T C C T C G C T C T C G C G C A T C G G G A T A G T C C C G G T G G A C G C G A T A A A G C T C C A C G A G T C C C T G A T C T C C T C C C T C G G C A C G A G C C C G G A G G G C G A G A A G G T C G T C G C C G G C C T G A T C G A A C C A A C C C A C G C C C T C G A C A A G T C G G C C G T C G C C G A A G G C G T C G A G A C C G A A G C C C A A C T G A A A A A G C T G C G C A A G C T C G G C T G C G A C T T C G C T C A G G G C A A C C A C C T C T G G A G C C G C T C G A A G C C G A G G A A G C C T T C A A G G T C C T C T C C C G A A G C G C C C G C C C C G A A G C A C A C G C C T T C A G A C T C C C C G T C A A A C C C T C C C G C T C C G C C G A C T G A A A C G C T T C T T C G C C A C A G A A C G C C C C C G C A C C T C C T G C A A A G C C G T T T C C G C C G T C T C A C C G C A T A C C T T C C G T T G C A G C A C C A T G C A C G A T G T G G T A T T T G T T C C T T T A A G A G A G A C A G G T G C A C T A T G C G C A A C A C G G T G G A C A T G G A G A G G C G C G T T C T G A G G C C C G G G T C G C G T T C G T T G C T C G G T C G G G G C G T T G T T G C G C G A G G G G G C G G G A T A G T T C T G T T C C G C C G G C C T C C G G G C T C C G G G T G C A T G C T C T T C T G T C T T G T C G G C A G G T C T T C G A G G T T G A T G A G C T T T G T G T T T G A G A T C T G G G G C C A C A T G C G C T G G T G G T C C T T C G G G G C T C T T G G A A G C C G A G G T C G G C T G G A G G G C G G A C A G T A C C T C G C C G G C C G T C G C G C C C C G C C C G C G C T G C G T C G G T A G
V
F
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T K L S V D D F G T G Y S S L S R I G I V P V D A I K L H E S L I S S L G T S P E G E K V V A G L I E P T H A L D K S A V A E G V E T E A Q L K K L R K L G C D F A Q G N H L W S R S K P R K P S R S S P E A P A P K H T P S D S P S N P P A P P T E T L L R H R T P P H L L Q S R F R R L T A Y L P L Q H H A R C G I C S F K R D R C T M R N T V D M E R R V L R P G S R S L L G R G V V A R G G G I V L F R R P P G S G C M L F C L V G R S S R L M S F V F E I W G H M R W W S F G A L G S R G R L E G G Q Y L A G R R A P P A L R R * |
Maingene=or0639; Extension SUCCEEDED with start of type START; Comments=Pseudogene, good start found, extended gene length>100aa and < 50% the length of the second shortest homolog | |
| or0663 - or0665, or0665 | 708805 | 709083 | pseudogene |
A
T
G
G
A
G
C
C
G
G
A
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A
G
A
A
A
G
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C
G A C C G A G C A A C C G A G C C T G A C G C C G G A G C A G C G C G G A C G C G T A A C C C G C C G C G C C G C G G T C A A A C C C T T G A A C G T C C T G A C C C T G A T C G C G G G C C T C G G C A T C A G C G C G A C G A C G G G A A G T C T C T G G C T C C T G C T C G C G A C G C T C G C C G T C T A C G C G A C G C T C G T C T T T C T T G C G A G C C G C G A C C C G A T C T T T A T C G A G C G G A C G G T C A G G G G C A G G C T C A C C G G C G G T A C C C G C T C C G G A G C T C C C C C C G C G A C A T G A
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V T R R A A V K P L N V L T L I A G L G I S A T T G S L W L L L A T L A V Y A T L V F L A S R D P I F I E R T V R G R L T G G T R S G A P P A T * |
Maingene=or0665; Extension FAILED; Comments=Pseudogene, failed extension, extended gene length<=100aa and < 70% the length of the second shortest homolog | |
| or0682 - or0684, or0684, or0684 - or0686 | 726767 | 727570 | pseudogene |
T
T
G
G
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C
C
C
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G C C T C T G A G G G T C C T C G A C G A C C T C T T G C G A C C G C C T T T C G A C G G A G A C G G T C C C G A G G C G G A G G C G G T G C T C G A C G T C G T T C C G G A G C T T G C G C C C T C G C G C G G C G T C G A G C A G A G C G G C T A C C A T C A C C T C G A C A C C C T G G G A C A C G T C T T C G A G G T C G T G C G C C T G A C G G G G C T C G A G C T C G A G G C G G G G G A G A T C G G G G C C C G C G T C C C G C C C G A G C G T C A C G G C G C G C T C C T T T T T G C C G C G C T T C T G C A C G A T G T T G C G A A G C C G A T C A C G C G C G G G G A G A T C G G A G G C C G C G T C C T C T T C G T C G C G C A C G A C A C G G T C G G G G C G C A C G T C G C C G G G G A G G T C G C T C T G A G G C T C G G T G T T C C G G C G C T C T A C G C C G A C C T C G C C T T C A C C C T G A C G G C G C T C C A C C T G A A G A T C G G C T T C A T G G A G A G C G A G C G C A C C G A C T A C C C G C C C G A G C G G C T C G T C C C G G C G G C C G G A G C C T T C G G C G A G G A G C T C G C C G T G C T C T C C T G G G C C G A T C G G C T C G C C G C A C A G G G A C C G A A C C T C C A G A G A A A G C A C C T C G A C C G C C A C C G G G A T C T C T G C A C C C G T T T C C T T G C T G C T A G C C G C G A G G C A G G G C C T C A C T C C G A G C C C G A C T A C G C C G G G A T A C G G G A G G A C C T C G G C C C C G G C G C T C C G G A G C C C G A G G T C G G G C T C G T C G C G G C C C G G G C G C G G C T C T A C G A G G T G C G G G G C G C C C G G C C G A A G G A G G C C C T T G C G G C C G C T G C G A G G A C G G T C C G C G C T C G C A G C T A G
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D G D G P E A E A V L D V V P E L A P S R G V E Q S G Y H H L D T L G H V F E V V R L T G L E L E A G E I G A R V P P E R H G A L L F A A L L H D V A K P I T R G E I G G R V L F V A H D T V G A H V A G E V A L R L G V P A L Y A D L A F T L T A L H L K I G F M E S E R T D Y P P E R L V P A A G A F G E E L A V L S W A D R L A A Q G P N L Q R K H L D R H R D L C T R F L A A S R E A G P H S E P D Y A G I R E D L G P G A P E P E V G L V A A R A R L Y E V R G A R P K E A L A A A A R T V R A R S * |
Maingene=or0684; Extension FAILED; Comments=Pseudogene, failed extension, extended gene length>100aa and > 50% and < 70% the length of the second shortest homolog, Blast redone with 250 hits and e-05, extended gene length <70% the length of the second shortest homolog | |
| or0707, or0707 - or0708 | 746905 | 747723 | putative pseudogene |
A
T
G
A
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G
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C A A G T A C G C C G C G A G G G C T C T G G T C G A G A T C G C A G T G A A C G G C T G C G A G C C G A T C G G G G T C G C A G A G A T C G C G C G C C G C C A G C G C A T C C C G G A G C G T T T C C T G G A G C A G A T C T T C G G C G A C C T C A G A C G G G C G G G C A T C C T C G A G A G C C G C C G G G G G G C G C A C G G G G G C T A C T G C T T C G C C G T G C C G A C C G A C C A G G T A A C T C T C C T C G A C A T C A T C G A G G T G C T T G A C G G G G A G A T A A G G C C C G C C A A G T G C A G C G C G G G G G G C G T C T G C T A C A T A G A C G A C G C G C C G C T G T G C T C G A C G A G C A A G G T C T G G G A C G A G G C G C G C A T C G C C C T C G A A G C G G T C T T C G G G C G C T A C A C G A T C G C G A A C C T C G C C G A G G C C G A G A A G G A G A G C C G C C G C A C G G G C C G C G A G G C G G C G A C C C T C C T C A A C T A G A G C C C G A G G G G A C G G A G C G G C C A T A A C C G A C C T C G C A A G A C A T C T C C G C G G C C G G A C C C A C C T G G C T G C G C G A G A C G T A G A G G T C G C C G G G C A T A C C T A C C G C C T G A C C C A C C C C G C T T C A G C C G A A G C G C T C T T C G A C G A G C G G G A G T T C G C C C T C G A C G A G C G C A T C C C C T A C T G G G C A G A T C T C T G G C C G A G C G C G C A C G C T C T G G C G C G C C G C C T C G C C G G G C T C G A C C T T G C C G G A A A G A C G G G C G T C G A G C T C G G G T G C G G C A T C G G G C T A C C C T C C G C C G T C G C C G C C C G G C G C G G G G C C T C T G T A A C C C T C A C C G A C C A T T A C G C C C C C G C C C T C G A C T T C G C C G C G C A C A A C G T T C T T G A
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R
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K
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A
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A
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G C E P I G V A E I A R R Q R I P E R F L E Q I F G D L R R A G I L E S R R G A H G G Y C F A V P T D Q V T L L D I I E V L D G E I R P A K C S A G G V C Y I D D A P L C S T S K V W D E A R I A L E A V F G R Y T I A N L A E A E K E S R R T G R E A A T L L N * S P R G R S G H N R P R K T S P R P D P P G C A R R R G R R A Y L P P D P P R F S R S A L R R A G V R P R R A H P L L G R S L A E R A R S G A P P R R A R P C R K D G R R A R V R H R A T L R R R R P A R G L C N P H R P L R P R P R L R R A Q R S * |
Maingene=or0707; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to second shortest homolog in length | |
| or0707 - or0708, or0708 | 747437 | 748045 | pseudogene |
G
T
C
G
C
C
G
G
G
C
A
T
A
C
C
T
A
C
C
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C C T G A C C C A C C C C G C T T C A G C C G A A G C G C T C T T C G A C G A G C G G G A G T T C G C C C T C G A C G A G C G C A T C C C C T A C T G G G C A G A T C T C T G G C C G A G C G C G C A C G C T C T G G C G C G C C G C C T C G C C G G G C T C G A C C T T G C C G G A A A G A C G G G C G T C G A G C T C G G G T G C G G C A T C G G G C T A C C C T C C G C C G T C G C C G C C C G G C G C G G G G C C T C T G T A A C C C T C A C C G A C C A T T A C G C C C C C G C C C T C G A C T T C G C C G C G C A C A A C G T T C T T G A G A A C T C C G G G G T C G A A G C A G A G A C A C G C C T G C T C G A C T G G C A C C G G C C C G G T G A G G G G C T C G A A G G T C T C G G C C C C T T C G A C C T C G T G C T C G C G G C G G A C G T C C T C T A C G A A C G G C G C A A C G T A G C G C C G C T C G C G G A C C T C G T C C C G A A G C T C C T T G C G G A G G G G G G C G A G G C G C T T T T C G C C G A T C C G C G C C G G G C C G G A G G A G A G C T C T T C C T T C G G G A G A T G G A G C G G C G C G G C T T C A G C G T G A G G A G C G A G G C C G C C G T A G T C G T C G A G G A C G G G C G G C C C G T C A A C G T C G C G G T C C A C T C G C T C A G A C G C G G C T A A
V
A
G
H
T
Y
R
L
T
H
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A
S
A
E
A
L
F
D
E
R E F A L D E R I P Y W A D L W P S A H A L A R R L A G L D L A G K T G V E L G C G I G L P S A V A A R R G A S V T L T D H Y A P A L D F A A H N V L E N S G V E A E T R L L D W H R P G E G L E G L G P F D L V L A A D V L Y E R R N V A P L A D L V P K L L A E G G E A L F A D P R R A G G E L F L R E M E R R G F S V R S E A A V V V E D G R P V N V A V H S L R R G * |
Maingene=or0708; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, extend to start of alignment | |
| or0757, or0757 - or0759 | 809004 | 810346 | complement (join (809004..809768, 809768..810346)) | pseudogene |
G
T
G
A
C
G
T
T
C
T
C
G
C
T
G
G
G
G
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G
T C T G T G G T G G A T A T C C T C G T A C G G G A T C G G T T T C A G T C T G C T C C A T C T G G G A A C G G C G G C G G G G C T G G C T T T G G C T T G C T T G C T G G C A C G C A A G T T C C C G C T G G A G T T T A A A A G G A A C A C G G T T G A G A T C G T G G A C G T G G C C G T G C T C A C G G C G A T G T T C G C G C T C G G T C C G G T T T G G G C G C T G C T T G T A G C C G T A C C G A G C T T C G T G T T T C G C G A G C G T C T G A G G A C G A T G T T C A C C T C G G G T G C G G A C G G C A T G T C G A T C C T C C T C G C C G G A G C G A C T T T C G G G G C G T T C T C C T C G C C C G T G C T C G A C G T C T C C G C G C C G A G C G A A G G T C T C G T G T A C G G G G C G G T A C T C G G G G G A G C G G T G T T C T A T C T C T C G A A C G C G T T C T T T A A T G C G C T C C T T T T G C G C T T C A A G T A C G A G T C C G G G G T G C T C G C C A A G A T G C G C G A G A G C C T C G C T C C G C T C G T C G C T C C G G A C A T T A T T G C C G T G C T T G C G G C G C T C G G G A C G G C G T A C G T G A C C G T C G C G T T C G G T C C G G C G G C G G C G C T G G T G C T C T T T C T G G G G G G A A C G G G G G C T T T G A T C T C T T T G C A C C T C A T A C A C A C G C G C C A G A T C G A G A A C G A G C A G C T T C G G G A G G A G A A C G C C G C T C T C C T C T C G G C G A A C G T C G G C T T T G T C G C C T C G C T C G T C G G G A C G C T C G G G G A G A A G C A C G C G T A T G T C G C G C G G A A C T C G G T C G C C T C C T C G G T C T A T G C C G G G G A C G T G G C G C G G G A G T T C G G C T T C G A C C G G A A G C G G G A G G A C C T T G T A A G G G T C G C G G C G C T C C T T C A G G A C G C G G G C C T T T T C G C C G T G C C G G A C G C C G T T G T C C G G G T C T C G C C G C A G C G G C T C A A C C C C G A C G G C C G G A C C G A G C T T G C G C G C C A C C C G G A G C T C T C G G A G A G A C T C C T C G C C G G G G T G C C G G G C T T C G A G G A G G C G G C G C A G T G G G T C C G C T G G C A C C A C G A G C G G C T C G A C G G C T C G G G C T T T C C G G A C G G C G T G C G C G G C C G G T G G C T G C C G C T G G A G G C G C G G A T G C T C G C G G T C G C C G A G G T G T A C G C C T C G C T C G T C C T C G A C A C T C C C G A A G C T C C C G C G C T C T C G C C G G A G G A G G C C C G C T T C A C C C T C A C C T C G C T C G C C G G A G A G T C G C T C G A C C G G G A G G T C G T C A A G G C C C T G C T G C G T C T G C T G G A T C G C G A G G A C G A G G C G T A C G C C C G G G C G A C C G G A G A A C G C T T C G C G C G C A G C G T C C C G G A C G C T G C G A G G A G C G G A C T C T C C C G G A C G G G C A C G G A C G G A C A C G G G A C T C T C A G G G T A G T A G G G C G G T A G
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L H L G T A A G L A L A C L L A R K F P L E F K R N T V E I V D V A V L T A M F A L G P V W A L L V A V P S F V F R E R L R T M F T S G A D G M S I L L A G A T F G A F S S P V L D V S A P S E G L V Y G A V L G G A V F Y L S N A F F N A L L L R F K Y E S G V L A K M R E S L A P L V A P D I I A V L A A L G T A Y V T V A F G P A A A L V L F L G G T G A L I S L H L I H T R Q I E N E Q L R E E N A A L L S A N V G F V A S L V G T L G E K H A Y V A R N S V A S S V Y A G D V A R E F G F D R K R E D L V R V A A L L Q D A G L F A V P D A V V R V S P Q R L N P D G R T E L A R H P E L S E R L L A G V P G F E E A A Q W V R W H H E R L D G S G F P D G V R G R W L P L E A R M L A V A E V Y A S L V L D T P E A P A L S P E E A R F T L T S L A G E S L D R E V V K A L L R L L D R E D E A Y A R A T G E R F A R S V P D A A R S G L S R T G T D G H G T L R V V G R * |
Maingene=or0757; Extension SUCCEEDED with start of type START; Comments=Pseudogene, both frameshift and stop-codon are present |
| or0930 - or0931, or0931 | 991429 | 992466 | putative pseudogene |
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G G A G G C G T C G A G G G T C G A G C C C G G G A C G A G C G T C C T G A C G C T G C T C G G C G G C C G G G A G C G G C A T C T G G C G A A C C T C C T G C T C G G G C T C C T G G C G A G C G A G A G G C T C C C G G A G G A G G T C G T C G T A G C G G T C A T G G G G G G C G A C G G G T T C G G C C C T T C G C C T C C T G A G G A C C T C C C C T T C C C G G T A A G G A C C G T G C G G G T T C C G G C C G G G C G G G A C C T C C C G C T G G C C C G G G C G C G C A A C G A G G C G G C C C G G A C C T C C T C G G G G G A G C G G C T C G T C T T T C T C G A C G T G G A C T G C A T C C C G G G A C G G G G G C T C G T C G G C C G G T A C G C G G C G G G G C T C C G G G A G C G G G A C G C G C T G C T C A T G G G C G A G G T G C G C T A C C T G C G T C C C G G G G T T C C G G G G C C G A G C T T T A C C G A G A A G G A C C T C C G C G C C G G A A G C G A G C C C C A C C C G C G C C G C G C A A G G C C G C C G G A G A G C G G G C T C C G C A G G G C G G A T C G C C A C G A G G A G T T C T G G T C G C T C T C C T T C G C C G T C C G G C G C G G G A C G T T C T T C G G G A G T A T C G G C G G C T T C G A C G A G A G C T T C A C G G G C T A C G G C G G C G A G G A C A C C G A C C T C G C G T T C G C C G C C C G C C G G G C G G G T G T C G G G C T C T T C T G G G T C G G G G A G G C C C C G G C C T A T C A C C A G C A T C A C C C C G T C C A C G C C C C G C C G G T A C A G C A C G T C G A G G A G A T C G C C C A C A A C G C C C G C C G G T T T C G C G A T A A G T G G G G C G T C T G G C C G A T G G A G G G C T G G C T C T G C G C C T T C C G G G A C C T C G G C C T C A T C G A G T G G A G T C C C G G G G G C G A G G A C C T G T G C G T C C T C C G C C C C C C G A C C G C A G C T G A G C T T C T C C G G A C C C G T C G A C A G G A C T G A T C C C C C T C T C G G T C G A C C G C G G A G C T C C C C C G C G C G T C A C C G A A A C G T C C C C G G A A G C A C C G C G C G G A T G A C G T C T C C C G G C C T G G G G A C C G G C A G A C G C G C C G G G C T C C G C A G A G G C T T G A A C C G C C G C A A G C G T A A
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L L G G R E R H L A N L L L G L L A S E R L P E E V V V A V M G G D G F G P S P P E D L P F P V R T V R V P A G R D L P L A R A R N E A A R T S S G E R L V F L D V D C I P G R G L V G R Y A A G L R E R D A L L M G E V R Y L R P G V P G P S F T E K D L R A G S E P H P R R A R P P E S G L R R A D R H E E F W S L S F A V R R G T F F G S I G G F D E S F T G Y G G E D T D L A F A A R R A G V G L F W V G E A P A Y H Q H H P V H A P P V Q H V E E I A H N A R R F R D K W G V W P M E G W L C A F R D L G L I E W S P G G E D L C V L R P P T A A E L L R T R R Q D * S P S R S T A E L P R A S P K R P R K H R A D D V S R P G D R Q T R R A P Q R L E P P Q A * |
Maingene=or0931; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to second shortest homolog in length | |
| or0938 - or0939, or0939 | 998167 | 999456 | putative pseudogene |
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T G A C G G A C G C C T G C G G G C G C T T G T C C G C A G G T C G G A G C A G G C A A C G G C G G T C C T T G G G C C G G A G G G C C G C C T C C T G T A T G C G A A C G C C G C C T T C G A G C G C G A C T A C G G C T A C A G C C C G C G C G A G G C T A C C G G C A T G A A C G T C C T C G A C C A C A T C C A C C C G G G C G A C C T G C T G C G G G T G G A G C G C G A A G T G A G C G C C G G A G A G A G T C C C G A G G A A C G C A C C G G C G A G G T C G G C T A C C G C T T C C G G T G C G C C G A C G G C T C C T G G C G G T G G G T C G A G G C G A G C G T C A T G C G C C T C G A A G G C A G G G A G G A G T C G C C G A G G T T C C T T C T C G T T G C G C A C G A C G C C G G G A G T G C G G C C G G G A G T G G C G A G T C C C G G C T G C G G C A G G T C C T A G A T C A G G T C C C C G A C G T C G T C A T T G T C C A C G A C G A G C G C G G C C G G G T G C T C G A C T G C A A C C G C G A G G C T T G C C G C T C T C T G G G C T A C A C C C G C G A G G A G C T T C T C T C G C T C T C C G T G C A G G A C T T C G C G G T G G G T C T G A T C T C C G A G G A G G A G C G C C G G G C C G C C G G G G G A G A C A C G C T C T G G C T C A G G G C C A T C G C C A G C G A G C C G G G C G A G A C C G T C G G C T A T C A C G G C G G G C T C C A C C G C A G A A A G G A C G G C T C G A T C T T C C C C G T C G A G G T C G C C G T C G G T G C G G T C G A G C A T G A G G G A C G G C G C A G G A T A C T C G C C G T C T G C C G C G A C G T A A C C G A G G G T C G G C G T C T G G A G A A G G A G A T A G A G C A C C A G A G C C T C C A C G A C C C G C T C A C C G G T C T T G C G A A C C G C C T C C T C T T T A C C G A G C A A C T C G A A C G C G C C C T A G C C C G C G C C G A G A T C G A C T C G A C C C C G G T C T C G C T C G T C C T G A T C T C C C T C G A C G A C C T C C G C A A C A T A A A C G A C C T C T T C G G T T A T G C C G C C G G G G A C C T C G C C C T C G T G G A C T T C G C C C G G C G T C T C A G G A A C G G G C T C C G G C C G G G G A C C G T G A T C T G C C G C C T C G G C A G C G G G G A C T T C G C C G C G C T G C T C G A A C G C T C C G G T C G G G A G G A G G C C G A G G A G A C C G C A C G C A G G C T G C T G C G C G C C C T G G A G A C C C C C C T G A C C C T C G A C G A C G C C G G A C G C C A G G T C G T C G T T A C C G C C A C C G T C G G A C T C G C C T C G A C C G A G G A C T C C G G G G C C G C T A C G G C G G A G G A C C T T C T G C G C G A C G C C A C C C T C G C C C T C G C C C G C A A A A G G G C C G A G A A C G C A G G C C C C G G A G G T C C C T C C C C G G A C G A A C C G G C C T G A
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A T A V L G P E G R L L Y A N A A F E R D Y G Y S P R E A T G M N V L D H I H P G D L L R V E R E V S A G E S P E E R T G E V G Y R F R C A D G S W R W V E A S V M R L E G R E E S P R F L L V A H D A G S A A G S G E S R L R Q V L D Q V P D V V I V H D E R G R V L D C N R E A C R S L G Y T R E E L L S L S V Q D F A V G L I S E E E R R A A G G D T L W L R A I A S E P G E T V G Y H G G L H R R K D G S I F P V E V A V G A V E H E G R R R I L A V C R D V T E G R R L E K E I E H Q S L H D P L T G L A N R L L F T E Q L E R A L A R A E I D S T P V S L V L I S L D D L R N I N D L F G Y A A G D L A L V D F A R R L R N G L R P G T V I C R L G S G D F A A L L E R S G R E E A E E T A R R L L R A L E T P L T L D D A G R Q V V V T A T V G L A S T E D S G A A T A E D L L R D A T L A L A R K R A E N A G P G G P S P D E P A * |
Maingene=or0939; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and > 50% and < 70% the length of the second shortest homolog, Blast redone with 250 hits and e-05, extended gene length <70% the length of the second shortest homolog | |
| or0943 - or0945, or0945 | 1003978 | 1004337 | pseudogene |
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G G C G C T T G A G C G G A T G G A C G C G A T G C T T G C C C A G A A G A A C G A G G C G G G G C A G A T G A T C C T C T A C A A C C G C G T C G C G G G C T T T G C C G T T A C C G G C A A C G A G G A C G G G G C G A A G A A C T G C A T C T C G G A C C T C G C G G C C G C C G T C G A G C T C G G C T T C G C C G T C C C G C C G C T C G C G T T C A C C T A C T G G A A C A T G G G A C C C G G A C C G G G C C C G G A C T A C T C C G G C A C C G A G C A C G G C C A C G A G T G G T C C G C G A C C A C G G C G A G G A C C T G C G C A C A C A A C C T C C A C C A C T T C G C C C G C A C G C T G C G C G A G C G T C C G A T C C C T C C G G A G G G G G C G C A G T G G A G G T A G
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E A G Q M I L Y N R V A G F A V T G N E D G A K N C I S D L A A A V E L G F A V P P L A F T Y W N M G P G P G P D Y S G T E H G H E W S A T T A R T C A H N L H H F A R T L R E R P I P P E G A Q W R * |
Maingene=or0945; Extension SUCCEEDED with start of type NONCANSTART; Comments=Pseudogene, non-canonical start found, extended gene length <= 80% the length of the second shortest homolog | |
| or0949 - or0950, or0950 | 1014508 | 1015644 | putative pseudogene |
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T C G C A G G C T C T G G C T C T G G T C C G A G G A G G C C C G G C G C G A G G T T C G G G C G G C T C G C A G C G C G C G A C T G G C C G A C C T C G T C T C G C G G G T C G C C G A G G A G A T C G A G T T C G A G C G C G G C C T C C T C G T C C C G C A C T G C C C G C G C G G C G A A A A C G T A C C G T C G G A G A G C C G G T T C C G T C T G C T T C T G G A G C G C T C G C C C T T T G C C G T G A A C G T G G T C G C T C G C G A C G G G A C G T C T C T T T T C G C G A A C G A G C G G T G G A A C G A A C T C T G G G G G C T T C C G G C G G G C G G C G T T C C C G G G A A T G T C T G T A G C G A C G C C G G G A C G C G C C G G G C G G G A C T T C C G C C G C A C G T G C A G C G T G C C T T C G C G G G C G C G C G A A C A G A G G T C T C G C T G A A G C T C G A C G G T G C G G G A C G C C C C G G A G G T C C G A C C G G A G A A C G T T G T T T G C G G G T G C T T G C G T A C C C G A T C C C C G C C A C C A C C G G A G A C G G C C A T C G C G A G C C G G A G A G C G T C C G G G A G G T C G T C A T T C T T G C C G A G G A T A T C T C C G C C C G G G C G C T G C T C G A G C G C G A C C T T G C C C G C C G T G C G T T C C A C G A C G A G A T G A C C G G C C T T C C G A A C C G C T C G C T G C T G C T C A G G C G C G C C G A G G A G G C G C T C C G A C G G G G C T C G G G G G A G G T C G C T C T T C T C T T T C T C G A C C T C G A C G A C T T C A A G C A G G T C A A T G A C T C T C T G G G G C A T G C G G C G G G T A A C G C T C T G C T C G T C G A G G T C G C C C G C A G G C T C G C G A C G A G C G T C C G C G C C G G G G A C A C C G T A G C C A G G T A C G G G G G C G A C G A G T T C G T C G T G C T C C T T G A G G A G G T C A G C G G C C C G C A G G A G G C C G C C G G G A C C G C C C G G C G G A T G C T C G A A G G G C T G C G T A C G C C G T T C C T G A T C T C C G G C A G A G C C G T A A C C G T G A C C T G C T C T A T C G G C G T C G C G A C C T C A G A A G C C G A C G A C C G C G A G C C G C C G T G C C C G G A G T T G C T G C T C T C G C G C G C C G A C G A T G C C A T G T A C C G G G C G A A G C T C G A C G G C A A G G A C C G C C T C A G T C T C T C G G A C C C G G A C G C G T C C C G C A C C G A C C G G A G C G T G C T G C C A C T C C C G C A G A G C C T C G A C G G T C A G A G C T A G
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V R A A R S A R L A D L V S R V A E E I E F E R G L L V P H C P R G E N V P S E S R F R L L L E R S P F A V N V V A R D G T S L F A N E R W N E L W G L P A G G V P G N V C S D A G T R R A G L P P H V Q R A F A G A R T E V S L K L D G A G R P G G P T G E R C L R V L A Y P I P A T T G D G H R E P E S V R E V V I L A E D I S A R A L L E R D L A R R A F H D E M T G L P N R S L L L R R A E E A L R R G S G E V A L L F L D L D D F K Q V N D S L G H A A G N A L L V E V A R R L A T S V R A G D T V A R Y G G D E F V V L L E E V S G P Q E A A G T A R R M L E G L R T P F L I S G R A V T V T C S I G V A T S E A D D R E P P C P E L L L S R A D D A M Y R A K L D G K D R L S L S D P D A S R T D R S V L P L P Q S L D G Q S * |
Maingene=or0950; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and > 50% and < 70% the length of the second shortest homolog, Blast redone with 250 hits and e-05, extended gene length <70% the length of the second shortest homolog | |
| or0951, or0951 - or0952 | 1015675 | 1015854 | putative pseudogene |
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G A T T G C C T T C C G G A A T T C C C G G A G G T A C G A G G A G C T T G C A G A G C G G G C C G A G A G G A C G A G C G A C G A C G A G C T G G C G G A G T T T T T C C G G C G G A C G T T C G A G G A G G A G G T C C G G C G G G C C G C C G A G G C G A G A A C G C T G C T T G C C C A G C G C G T C G C C G A G T A G
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E R A E R T S D D E L A E F F R R T F E E E V R R A A E A R T L L A Q R V A E * |
Maingene=or0951; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length<=100aa and < 90% the length of the second longest homolog Blast report of region is empty | |
| or1016, or1016 - or1017 | 1078775 | 1079815 | putative pseudogene |
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A C G C C T T A C G C A G T A C T C G T C A A A G G C C G G T T G A G C C T C C A A G C T G G C T C C A G G G G T C C T G G A G C A G G T A C T T G A G T C G T T C G G C C C G T C C C G C T C G A C G C T C G A A G G G G C G T C G A G C A G C C T G A A G A C G C G C G A C G A C G C G G G C T T T A T C C C G T T C G C C G G G G G G C T C C T C C T T C A G T C G G T G G A C T T T T T T C C C C C G A T C G T G G A C G A C C C G T A C C G C T T C G G G C A G A T C G C C G C C G C C A A C G C T C T C T C G G A C A T C T A C G C G A T G G G C G G C G C C C C C C T G A C G G C G A T G A A C C T C G T C G G C T T C C C G A A G G A C C T C G A C C T T G G G G T A C T T C A G T G C A T A C T C G C C G G C G G G A T G T C C A A G A T C G A G G A G T C C G G G G C G C A G C T C T G C G G C G G C C A C T C C G T C G A G G A C G C G G A G C C G A A G T A C G G T C T C T C C G T G A C G G G C T T T G T C G A G C A G G A G A A G G T C G C G C G G A A C C T C G G A G C G C G C C C G G G C G A C G C G C T C G T C C T T A C G A A G C C C G T C G G G T T C G G C A T C C T C A C C A C C G C C G T G A A G C G C T C T C T T G T C A C C G A G G A C G A G A T A G A A G A C G C C A T C G C C T C G G C G A C G C G C C T C A A C C G G G C C G C C G C C G A G G C G A T G G A C G G C A T C G G G G T G T C G G C G G C G A C G G A C G T T A C G G G C T A C G G G C T C G C G G G G C A C C T C T C G G A G G T T A C G C G G G C G A G C G G G G T C G G T G C G G T C G T G C G G C T C G G G G A G G T C C C G C T C C T C G A C C G G G C G G C G G A G C T G G C C T C G T C G G G C T G C T A C C C G G G C G G C C T G A A G A C C A A C C G G G C G T A C C T C G G G G A C T A C G T A A C G C T C G A C G G C G C A A C C G A G G A G C A G G C C C T C C C G G T C T T C G A C C C G C A G A C G A G T G G C G G G C T C C T C G T C G C C G T A C C G C A G A A C A A C T G C C A A G C C T A C C T C G C G G C G C T T G A G G A G C G C G G G G C T T C G G G C T G G A C C G T C G G G G A G A T C G T C C G G G G C G A G G G C A T C C G G G T A A C G T C C T A G
M
D
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A
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*
A
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K L A P G V L E Q V L E S F G P S R S T L E G A S S S L K T R D D A G F I P F A G G L L L Q S V D F F P P I V D D P Y R F G Q I A A A N A L S D I Y A M G G A P L T A M N L V G F P K D L D L G V L Q C I L A G G M S K I E E S G A Q L C G G H S V E D A E P K Y G L S V T G F V E Q E K V A R N L G A R P G D A L V L T K P V G F G I L T T A V K R S L V T E D E I E D A I A S A T R L N R A A A E A M D G I G V S A A T D V T G Y G L A G H L S E V T R A S G V G A V V R L G E V P L L D R A A E L A S S G C Y P G G L K T N R A Y L G D Y V T L D G A T E E Q A L P V F D P Q T S G G L L V A V P Q N N C Q A Y L A A L E E R G A S G W T V G E I V R G E G I R V T S * |
Maingene=or1016; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to second shortest homolog in length | |
| or1050 - or1051, or1051, or1051 - or1053 | 1113064 | 1113501 | putative pseudogene |
A
T
C
A
G
G
C
G
G
C
T
C
G
C
G
G
A
G
T
A
C G A A A G G C T C G C G C A C G A G G T C G T G G C G A C G G A G A G G G A C C T G C G G G A G A C G C T C T T C G G G G A G C G G C G C T A C G C T G A G G T G C T G C T G G G T T T C G T A G G G G A C G A G C C G G T T G C G T T C G C C C T C T T C T T C C A T A A C T A C T C G A C G T T T C T G G G G A G G C C G G G G A T C T A C C T C G A A G A C C T C T T C G T C C T T C C G G A G C G G C G C G G C T C G G G A T A C G G G A A G G C G A T G C T C C G A C G T C T T G C A A A G C T C G C C G T A A A G A G A A A C T G C G G G C G A C T C G A A T G G T G G G T C C T C G A C T G G A A C G A G G A T G C G A T C G G C T T C T A C C G G A G C C T G G G G G C C G T T C C G A T G G A C G A G T G G A C G A C G A T G C G G C T T G C C G G C G A T T C A C T C A A G G A G C T T G C C T C G G A C G G C T C T T C G A G C G G A T A A
I
R
R
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A
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E
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V
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L R E T L F G E R R Y A E V L L G F V G D E P V A F A L F F H N Y S T F L G R P G I Y L E D L F V L P E R R G S G Y G K A M L R R L A K L A V K R N C G R L E W W V L D W N E D A I G F Y R S L G A V P M D E W T T M R L A G D S L K E L A S D G S S S G * |
Maingene=or1051; Extension SUCCEEDED with start of type NONCANSTART; Comments=For manual analysis, pseudo or non-canonical start codon, extended gene length > 80% the length of the second shortest homolog | |
| or1053, or1053 - or1055 | 1113933 | 1114553 | putative pseudogene |
A
T
G
C
C
G
A
T
C
T
A
C
G
A
A
T
A
C
A
A
G T G T C A G A A C G G G C A C G T C T T C G A C G T C A T G C A G C G G A T G T C C G A C G A T C C G C T C G A A G T C T G C A T C A A G T G C G A C G C C T C G G T G C G G A A G G T G A T G C A G C C G G T C G G G A T C T C C T T C A A G G G C T C G G G C T T C T A C T C G A C C G A C T A C A G C G G C G C G A G C C A G A A C A C G C C G C C G G G C G A G T C G A A C G T C T C G A A G A A C G G G T C C T C C G A C G C C T C T T C T T C G C A G A A C G G C G A C T C G A A G T C T T C C T C T T C C G A G A A G G C G G G G A G C G C G A C C G G G G C C T C G T C C G G C T C T T C T T C G G G G G C T T C A G G G G A C T A G A C C G T G A G C G G G G A C G C A C G G G T T C G G G A G A T A G C G A A T C C C G A C C G C A G C G C G T C T C C T G C C C G C A G G C A G G T A C T C G A A C G G A C G C T C G G G C G G A T C G T A C T C G C G C T C A C G T T C C T T A T C G T C G T G G G C G C C G T C G C C A T C T C C T C C G G C C T C G T T G T C T A C A C G G C C T G G G T C C A C G A C C T C A G A G A A G G C T T C T T C G C G C T C G T A T T C G C C G T C A T G A G C G G G A A G A T C G C C C T C C A C T G G T T T C T C T G G A A A G A G G A G G C C G A C C A G C T C T C C G A G T A G
M
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S D D P L E V C I K C D A S V R K V M Q P V G I S F K G S G F Y S T D Y S G A S Q N T P P G E S N V S K N G S S D A S S S Q N G D S K S S S S E K A G S A T G A S S G S S S G A S G D * T V S G D A R V R E I A N P D R S A S P A R R Q V L E R T L G R I V L A L T F L I V V G A V A I S S G L V V Y T A W V H D L R E G F F A L V F A V M S G K I A L H W F L W K E E A D Q L S E * |
Maingene=or1053; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to second shortest homolog in length | |
| or1148, or1148 - or1149 | 1204277 | 1204954 | pseudogene |
C
G
C
C
C
G
G
C
A
G
T
T
A
C
C
T
T
T
G
C
G C T G A T C T C G G C C T G C C T C T T T G T C T A C G T G G C G G T C G C T T T T A T C G G G T C G G C G A C C G A A C C G C T G A A C G T G G C C C T G A T C C G T C A G C C C C T C C C G A T G C T C G C G G A G G G C G C G C T C A T T C C G G C G C T C G T C G C C T C G G G C G A G G T C T G G C G G C T T C T C T C C A G C A T G T T C C T T C A C T C G G G C T T C G T G C A C G T C G C C C T G A A C A T G G T C T C G C T G T A C T T T C T C G G C T C G T T T G T C G A G C C G C T C T T C G G G C G C G G C A A G T T C C T G C T G C T C T A C C T G G C A A G C G G T C T C T C C G G C G G C A T C G C C T A C C T G T A C T T C A G C G G C T T C G A C T C C C T G G C G G T A G G G G C T T C G G G G G C G A T C T T C G G C C T T A T A G G C G G G A T C T T C G G C T T C G C G C T C A G G G A G A G G A C G T T C T C C T G G G G C A A C C C G A T C A T C C G C C A G C T C C T G A T C C T T C T C G C C C T G A A C C T C T A C G T C G G T T T C A C C G T C G C C A A C A T A A G C A A C A C A G C G C A T A T C G G C G G G C T C G C C G G C G G A G C G G T G T T C G G G T T C C T G A T C T C C C C G G C T C T G C G A A G C T C G A A G C G C T C G A A G A C G G T C C T C C C G G T C G C G G C G G T C T T C C T T A T C C T G A C C G C C C T C C T G A T C G T C T G G C T C C T T C T C T T C G C C T G A
R
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A
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A
F I G S A T E P L N V A L I R Q P L P M L A E G A L I P A L V A S G E V W R L L S S M F L H S G F V H V A L N M V S L Y F L G S F V E P L F G R G K F L L L Y L A S G L S G G I A Y L Y F S G F D S L A V G A S G A I F G L I G G I F G F A L R E R T F S W G N P I I R Q L L I L L A L N L Y V G F T V A N I S N T A H I G G L A G G A V F G F L I S P A L R S S K R S K T V L P V A A V F L I L T A L L I V W L L L F A * |
Maingene=or1148; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, extend to start of alignment | |
| or1180 - or1181, or1181 | 1237963 | 1238568 | putative pseudogene |
G
T
G
C
A
G
G
T
C
G
G
G
T
G
C
G
G
A
C
C
G C A C A A C G C C A T A G T G G G T T G G T G G A A C A C G G A C A T C C G C T C C T T C C C C G G A A T A G A T G C G G T C A T G G A T G C C A C G C A G C C C T G G C C C T A C A G C G G G C T A G A G T A C G T T T A C G G C G A G C A C T T C C T G G A G C A C C T C A C A C T T G A C G G G G C G C T G A G G T T C C T G G A G C A T G C C G G G A A C A G C C T G G G G A G C G G G G G G A G G A T C C G G C T C T C C A C G C C G A A C C T C G A A T G G G T G C T T C T C A C G C A C T A C G C T T C C G G C G C G G A A C C G G A G G A G A C C C T G A A C G G G A C G A T G A G G A T A A A C C G G G C C T T T C A C G G C T G G G G G C A T C A G T T C C T C T A C T C G C G G G T C A T G C T T G A G T A T C T C C T T A C G G A G C T G G G T T T C C G G G A C G T A G C C T T T T T C T C C T A C G G C G A G A G C G A C A C C C C C G C G C T C G C C A A C C T G G A G C G T C A C G G G G G T T T C T C C G T G T A C G A A G G A C A G C C G A G C G T G A T C A T C G C G G A G G C C A G C C G G G G G G A C G C G C C G A T T G C A C C C T C G C A G G A G C T T G T T G A C T G G A T C A A G A G C G A T T A C C T G C G C T A C G C T C G T C C G G G G G C G C A C T A G
V
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W
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S F P G I D A V M D A T Q P W P Y S G L E Y V Y G E H F L E H L T L D G A L R F L E H A G N S L G S G G R I R L S T P N L E W V L L T H Y A S G A E P E E T L N G T M R I N R A F H G W G H Q F L Y S R V M L E Y L L T E L G F R D V A F F S Y G E S D T P A L A N L E R H G G F S V Y E G Q P S V I I A E A S R G D A P I A P S Q E L V D W I K S D Y L R Y A R P G A H * |
Maingene=or1181; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or1183 - or1184 | 1239789 | 1240254 | complement (join (1239789..1240142, 1240144..1240239)) | pseudogene, missed gene |
G
G
T
T
T
C
G
G
G
C
T
C
T
G
G
C
T
C
G
C
A A A C C G T C T G C T C G A C G G C C C C G A C G G C G A G G T C G C C C G C C T G A G G G G C G A G G C G T C G G A G T G G G G T T C C T A C C T G T A C A T C C T T G C G G A C T T C G C G C T C T A C G G G A A C C T C C T C G T C G C G C T C G C G G T C C A G C A C C C G G A T G C C C G A C T C G C G A T C T T T C T C G C T T A C T A C C T C A G C G G G A G C G C G C T T C T C G C C C T C T C A A G C G C G C T A G A G C A C C T G A A A G C G G A A C G G C G C A C C G A G C G C T G C A C A T C C G A C G T T T C G C T C G C G C A G G G C T T C G A G A C G G T C G T C T A C G G C G T C C T T G C C C T G C C G C A G C A C G T C G C G C T G C T T A C C T G G A T C T T C T T C G C G A T G G T C T C C G T C T C C G T T G T C C A G C G T C T C C T C G A C G C G A G A A G G C T T C T G G C G G G T C G C T G G T C C T T C G C T A G C C C T C G A T A A
G
F
G
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L
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L
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D
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L R G E A S E W G S Y L Y I L A D F A L Y G N L L V A L A V Q H P D A R L A I F L A Y Y L S G S A L L A L S S A L E H L K A E R R T E R C T S D V S L A Q G F E T V V Y G V L A L P Q H V A L L T W I F F A M V S V S V V Q R L L D A R R L L A G R W S F A S P R * |
Comments=Pseudogene, abnormal start as well as frameshift |
| or1221, or1221 - or1222 | 1289951 | 1290967 | pseudogene |
G
A
A
G
A
G
A
G
G
A
T
C
G
C
T
A
G
T
T
T
A G A G G T C C G T A A A A G A G G C A A C A A A C A G G A C G A G G T A T C G G G A G A T C C T C C T G C G A G A C C T C T G T C C G A A G C C A C G C C G A G G G C T T G G G A A G T T C A A C G G G G A G G A C G C A A A G T G G C A A T C A A C C C G C C G A A G C G A T C A G A G A C C G C A A A G A T C G T C C G G G A A T C G G A C A C T C C G G A G T T G C T C G C G A A G T A T C T G G C T T A C A T C G G G C A G G G C C A G T T G C T G A C G C A C G C G G A G G A G A T A G A C C T C T C C G A G C G C G C A A A G A A G G G C G A C C G C C G C G C C C G C C A G C G C C T C A T C G A G A A G A A C C T G C G C C T C G T C G T C A G C G T G G C A A A G A A G T A C C G C G G C T A C G G G C T G C C C T T C G A G G A C C T T A T C C A G G A G G G C A A C A T A G G G C T C A T G A A G G C G G T T G A G A A G T T C G A C C C G G A C C G G G G C T T C C G G T T T T C G A C G T A T G C T A C G T G G T G G A T A A G G C A G G C T G T G C A G C G G G C G G T A G C G G A C A A G G G C A G G A C G A T C C G C G T C C C C G T G C A C A T G A C C G A G A A G A T C C G C A A G G T C A G C C G C A C C T A C A A C G A G C T T G C G C T C G G C C T T G A G C G C G A G C C G A C G G T G G A G G A G A T C T C C G A G A A G C T C G A A T G G T C G G C G G A C G A C G T G C G C C T C A C G C T C G G G G C G A T G C C C G A C G C C A C G A G C C T C G A C C A G C C G G T C T C G A C C G A C G A T G C C T C C T C G C A G C T A G G G G A C T T T A T C G A G G A C G A G A A G G T C T C C G A C A C C C C G G A C A C C G T G A T G C G C G A G A T G G A G A C C G T C C A G C T C A A G G A G G C G A T A G A C C G C C T C C C G G A C C G G G C C C G G T A C G T G C T C G T G A G G C G C T A C G G C C T C G A C G A C C G C G A G C C C G C G A C G C T C G C G C A A C T C G G G G A C G A G C T T G A G A T C T C C C G C G A G C G G G T G C G C C A G C T T C A A C G C G A G G C C G A G C G C A T C C T C A A G A G C G G C G A G C A C G G C C G G A T C C T C A G A G A C G C C G T G G C C T G A
E
E
R
I
A
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R
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G D P P A R P L S E A T P R A W E V Q R G G R K V A I N P P K R S E T A K I V R E S D T P E L L A K Y L A Y I G Q G Q L L T H A E E I D L S E R A K K G D R R A R Q R L I E K N L R L V V S V A K K Y R G Y G L P F E D L I Q E G N I G L M K A V E K F D P D R G F R F S T Y A T W W I R Q A V Q R A V A D K G R T I R V P V H M T E K I R K V S R T Y N E L A L G L E R E P T V E E I S E K L E W S A D D V R L T L G A M P D A T S L D Q P V S T D D A S S Q L G D F I E D E K V S D T P D T V M R E M E T V Q L K E A I D R L P D R A R Y V L V R R Y G L D D R E P A T L A Q L G D E L E I S R E R V R Q L Q R E A E R I L K S G E H G R I L R D A V A * |
Maingene=or1221; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, extend to start of alignment | |
| or1282 - or1283, or1283 | 1349176 | 1349835 | pseudogene |
A
G
G
C
G
C
G
C
C
G
C
C
C
G
C
C
T
G
A
A
A A C A A A G A A G C A C C G C G A A A A G G A G C G C C T C T T C C T C G C C G A G G G A G A G G C G T T T C T C G C T G A G G C G G G C A G A G C G C C G C T C G A A G T G T T C G A C G C G C C G G A G G A G G T C C G G C G G C T C T C T T C C T T G A C G A C G C C G A C G G G A C C G G T C G G G G T G T T C G A G T A C G T C G A C G T G A G C G G C G A G G A G C T G C T C C T C C G G C G G C A A G T A G T C G T C C T T C T C G A T G G G G T G C A G G A C C C G G G G A A C G T C G G G A C G G T T A T A A G G T C G G C G C A C G C C T T C G G G G C C G G A G T C G C G C T C T C G G T C G G A T C A G C G G A C C T C T A C A A C C C G A A G A C C G T C C G G G C G A C G A T G G G C T C G C T C T T C T C C G C C G C C G T C G C C C G G G A G G T C G A C T C C C G G G A G T T A G T A G C G G C G G C G A A G G A G G C C G G T T T C A C G A C C G T T G C G G C C G T C T C G C G C G G T G G A G A G A G A C C G T C C G G A G T A C C G A A C G G C C C G G T C G T G A T C G C G G T C G G C T C G G A G G G C T C C G G G C T G C C C G A G G A G T T G G T C G G G G A C T G C G A T C T C G G G G T C T C G A T T C C C T C C G A G G C C G A G T C C C T G A A C G C C G C C G T G G C C G C C T C G A T A C T G C T C T A C G A G G C G C A T A T A C G T G T G C T A C C A T A A
R
R
A
A
R
L
K
T
K
K
H
R
E
K
E
R
L
F
L
A
E G E A F L A E A G R A P L E V F D A P E E V R R L S S L T T P T G P V G V F E Y V D V S G E E L L L R R Q V V V L L D G V Q D P G N V G T V I R S A H A F G A G V A L S V G S A D L Y N P K T V R A T M G S L F S A A V A R E V D S R E L V A A A K E A G F T T V A A V S R G G E R P S G V P N G P V V I A V G S E G S G L P E E L V G D C D L G V S I P S E A E S L N A A V A A S I L L Y E A H I R V L P * |
Maingene=or1283; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, extend to start of alignment | |
| or1287 - or1288, or1288 | 1354357 | 1354977 | pseudogene |
T
T
C
T
T
T
G
A
C
C
G
G
G
A
C
T
C
C
C
G
C G A G G T A G C G A T A G A C C T T A T A G G C T G C A C C C T T C T T C A C G A G A C G C C T G A G G G A G C G G C G G G C G G A G T C A T C G T T G A G A C C G A A G C C T A C C G C G A G T A C G A C C C G G C C T G T C A C G C C T A C A A C G G T C C G A C G A T G C G C A A C C G C A A C C T C T T C G C T C G T C C C G G G G T C G C C T A C G T C T A C C T C T C C T A C G G C A T C C A C C A C C T C A T A A A C G T T G T C T G T G A G C G C G A G G G C T A C G G C A G C G C G G T C C T C G T G C G C G C C C T C C G G C C G T C T C T C G G G A C A G A C C T C A T G G C A A G G A G G C G C G G A C C G A A G G T C C G G G T C A A G G A C C T G A C G A A C G G T C C G G G A A A G C T C T C C C G G G C G C T C G G G G T G G A C C T C G C G C T C G A C G G T A C G G A C C T C A C G A A A G G G C C G C T A A G G C T A C T C T A C G G C G A G C G G G A G G A G G C C G A G G G A G A C A T C G T C T C G A C G A C G A G G A T A G G C A T A A C C C G C G G C G C A G A G C T C C C C T G G C G C T A C C T G G C A A C C G G G G A G C T C G A C G T C T C C G T G A A G C C G C T C A G A G T C T G C G A G C G G G G C C T T G A A A G G C T C T T C G G G A A G A G C G A C T C A G C G C G C T A G
F
F
D
R
D
S
R
E
V
A
I
D
L
I
G
C
T
L
L
H
E T P E G A A G G V I V E T E A Y R E Y D P A C H A Y N G P T M R N R N L F A R P G V A Y V Y L S Y G I H H L I N V V C E R E G Y G S A V L V R A L R P S L G T D L M A R R R G P K V R V K D L T N G P G K L S R A L G V D L A L D G T D L T K G P L R L L Y G E R E E A E G D I V S T T R I G I T R G A E L P W R Y L A T G E L D V S V K P L R V C E R G L E R L F G K S D S A R * |
Maingene=or1288; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, extend to start of alignment | |
| or1417 - or1418, or1418 | 1486908 | 1487354 | putative pseudogene |
T
T
G
G
A
G
A
G
A
C
T
G
A
C
G
A
G
G
G
C
G G T A G A A G G G G C G T T G C C C G A G G A C G C G G A G C T T G T A G A G G C C C G G T T C T C C G G G G G G C C G C T A C T T A C G C T G C T C G T G G A C A A C C T C C A G G G G C C G G T A G A C C A C G A G T T T A C C G G C A G G A T C G C G G G C G T C G T C T C C C C G G T T C T C G A A G A C G A G G G C T A C G A A G G G A T G A T C G A G G T T T C G T C G C C G G G A A T T G A G C G T C C G C T G A C G A G A C C C G C G C A C T T C G A G C G A T T C A C A G G G C A C G A A G C G A A G G T C C G C A C C G C A A G A G C C G T G G A T G A G G C C G G G G G A C G C A G G A A C T T C A C G G G C G T C A T C G C C G G G G C C G G G G C G G A G G G C T T C A C G C T C A A G C T A G A A G A G G A C G G A C G G G A G G T C G C G A T C G G C T A C G C C G A C G T G A C A C G T G C C G T G C T C A A G G A G G A T G T C A A C A A A T G A
L
E
R
L
T
R
A
V
E
G
A
L
P
E
D
A
E
L
V
E
A R F S G G P L L T L L V D N L Q G P V D H E F T G R I A G V V S P V L E D E G Y E G M I E V S S P G I E R P L T R P A H F E R F T G H E A K V R T A R A V D E A G G R R N F T G V I A G A G A E G F T L K L E E D G R E V A I G Y A D V T R A V L K E D V N K * |
Maingene=or1418; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo, good start found, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or1509, or1509 - or1511 | 1578665 | 1580682 | pseudogene |
C
C
T
G
G
A
G
A
G
T
C
G
C
A
T
A
G
C
C
G
A G G C C G A G T C C C G C T A C G A G C A A C T C G G G G T A C G C G A G G C G C G C C T C T C C A A C T C G G A G C G G A T A C G G T C T C T G G C C G C A A A G G A C C A G G G C A T G A A G G C T C C G G C G G C C G C G G A G A T C G A G A C C C T C G A A G C A G A G G C G G G A G A C G G G A G C G C G C T T G A G A C G C C G G G A C C C T G A G A G A G G A G C C C C C G G A A A G C G C G G G G C G C G A G G C G G G A G C A G G G G G C G C A G A G G C G A G G T C G T C G A G C T C T C G G C C C G G A G G C G C G C C C G C C G G G C G C G A C C G G T T C C G G C C A G A C C T G C G G T G A A G A G G C G A C C T G C C G G A G G A A C G G G C C G G G G T C G G A C G G A A C G C A G G A C G G G G C T C C G G C G A G T T G A G G T C G T A C T T C T G G C C T T C G C G C T T G C G A C G G T C T T G C T T C T C G G G C G G G C G G T C T A C A T G A G C G T C G C C G A C G C C C G G A G C G T G A C G G A G T T C G T T G C G A G C C A C A C G C C C G T A A G C G A G G T C G A G G T A A C G A G A G G C G A C A T C C T G A G C G C G G A T G G A C G C G C C C T G G C T A C C A G C G T G G C G G C G G T G G A G G T T A T C G C C A C G C C G C G G C A G G T A G A G G A C C C G G A C G G G A G C G C G G C C C G G C T C G C G G A G G T A A T C G G C T C T G A G G C C G A C C T T T C G C G G G A G G A G A T C T C G G C G C T T C T C T C G G C C A C G G A A C C G G A T G G G T C G C C G G G G G A C T A C A G C C T C G T C G C C A C G G T C A G C C C C G A G A C G G C G G A G A G G G T C G C G G A G C T C G G T A T C G T C G G G G T C T A T C T C G A C T C G A C G A C C G A G C G G G T C T A C C C G G A T G G A C G T C T G G C G G C G C A G G T G A T C G G C A A C T A C G G C T C C G G C G G G G C A C T C G G C G G G A T C G A G G C C C G C T A T G A C C G G G A G C T C T C C T C G G G G C G G G A C G T C G A G T T G A C C C T C G A C A C C G C C G T G C A G C A G G A G C T T C A G A G C G C C C T G G C C G A G G C G G T A A A G G A G T T C C G G G C G A A G G G A G C G G T T G G G G T G G T G A T G C G C G T G G A G G A C G G C G C G C T C G T C G C G C T C G C A A G C A G C C C G A C C T A C G A C A A C A A C G A C T T C T C G G A C T C T C C G G T A G A G G T G C A G C G C A A C C G T G C G A T C A C C G A C C C C T A C G A G C C G G G C T C G A C C C T C A A G C C G T T C A C C T T C G C C G G G G C G C T C G A A G A A G G G G C G G T C G A G C C G G G A C A G T C C T T T C T T G T C C C G G A C A A C A C G A C C G T C G G G G G A C A C G T G G T G T G G G A C T C G G T A C C G C A C G A G C C G G A G A A C A T G G A C C T C C C G A C G A T C C T C G C C G A C T C C A G C A A C G T C G G G A C G A T C G A G G T C G C C C G C G C C C T C G G G G A A G A C G G G G T G T A C G G G T A C C T G G C G G A C T T C G G G T T C G G T C G G G A C A C C T C G C T C G A C C T C C C G G G A G A G G A C C C G G G C T A C C T G C C G G A G C G C T C C G A G T G G A G C G G G G T C T C G A T C G G G A A C A T C C C G A T C G G C C A G G G C C T G A C G G T A A C C C C T G T A C A G C T C G C G G C G G C C T A C G C G A C G C T C G C G G G C G G C G A G C G C G T C C A G C C G C A C A T A A G C G G G G T C G A A A A G A G C C G G C C C G A G G A C G G G A C C G G G C G T G T G A T A A G C G A G C G T A C C T C G G A T A T A G T A C G C A C G A T G T T G C A G T C C G T A G T C G A A G A C G G G A C C G G T C G T C T G G C C G C A G T T C C C G G T T A C A C C G T T G C C G G C A A G A C C G G G A C C T C A G A G A A G G T A G A C C C G A A G A C C G G C A C C T A C G G A G A C G A G T A C T A C G C C T C T T T T G C A G G C T T C G C C C C C G C A A C G G A C C C G G A G T A C G T C G T G G T G G T C G T G G T G G A C G A G C C G A G G A A G T C G A T C T G G G G C G A G A G C G T T G C G G C C C C G G C C T T C A G G A A G G T C A T G G A G T T C A C G C T C G G G T A C T T C A A C G T T C C G C C A G A C C G G C T C G T T C C G G A G A G C G C G G A A C A G C C A T C C A C T G C T G A A C C T G C G A G T A C G G A G G G A G G T A G C G A A T G A
P
G
E
S
H
S
R
G
R
V
P
L
R
A
T
R
G
T
R
G
A P L Q L G A D T V S G R K G P G H E G S G G R G D R D P R S R G G R R E R A * D A G T L R E E P P E S A G R E A G A G G A E A R S S S S R P G G A P A G R D R F R P D L R * R G D L P E E R A G V G R N A G R G S G E L R S Y F W P S R L R R S C F S G G R S T * A S P T P G A * R S S L R A T R P * A R S R * R E A T S * A R M D A P W L P A W R R W R L S P R R G R * R T R T G A R P G S R R * S A L R P T F R G R R S R R F S R P R N R M G R R G T T A S S P R S A P R R R R G S R S S V S S G S I S T R R P S G S T R M D V W R R R * S A T T A P A G H S A G S R P A M T G S S P R G G T S S * P S T P P C S R S F R A P W P R R * R S S G R R E R L G W * C A W R T A R S S R S Q A A R P T T T T T S R T L R * R C S A T V R S P T P T S R A R P S S R S P S P G R S K K G R S S R D S P F L S R T T R P S G D T W C G T R Y R T S R R T W T S R R S S P T P A T S G R S R S P A P S G K T G C T G T W R T S G S V G T P R S T S R E R T R A T C R S A P S G A G S R S G T S R S A R A * R * P L Y S S R R P T R R S R A A S A S S R T * A G S K R A G P R T G P G V * * A S V P R I * Y A R C C S P * S K T G P V V W P Q F P V T P L P A R P G P Q R R * T R R P A P T E T S T T P L L Q A S P P Q R T R S T S W W S W W T S R G S R S G A R A L R P R P S G R S W S S R S G T S T F R Q T G S F R R A R N S H P L L N L R V R R E V A N |
Maingene=or1509; Extension FAILED; Comments=Pseudogene, For manual analysis, insane blast coordinates, possible BlastX mistake in reporting coordinates | |
| or1640, or1640 - or1641 | 1711631 | 1712113 | putative pseudogene |
T
T
G
G
T
T
T
C
T
T
C
C
G
T
T
C
T
G
T
C
T G T T T T C G G G G C G A G G A C C T T C C G A G C G G C G G T G G C C G T C G C G G T G G T C G T C G C G G T T C T G G C G G C G C T T G T C G G C G C G A A G T C C G A G A G C G C T C T T G C G C A G G A G G C G G G T T A C G G C T C G G G C G A G G C G G T C G T C G C C G A G G C G C A G G G C T G G C T C G G G G T C C C G T A C G T G T A C G G C G G G G C G T C C T A C G C G G G G G T T G A C T G C T C C G G G C T C A C G C A G C A G G T G A T G G C G G C C T T C G G G G T C T C G C T G C C G C A C T C G G C G G C G G A G C A G T T C G G C T A C G G A G C G C C C G G A T C G G G T G C G G C G G G G G A C C T C G T C T T T G C C G A C T T C A C G G G C G G C G G C A T C G G C C A C G T C G G G A T A G C T A C G G G C G A C G G G C A G A T G A T C A A C G C T C C G T A T C C G G G T A C C A C C G T C C G C T A C G A C C C G A T C C C G G C C G A G A A C C T T G T C G G C T A C A G G A C C G T C G T G T A G
L
V
S
S
V
L
S
V
F
G
A
R
T
F
R
A
A
V
A
V
A V V V A V L A A L V G A K S E S A L A Q E A G Y G S G E A V V A E A Q G W L G V P Y V Y G G A S Y A G V D C S G L T Q Q V M A A F G V S L P H S A A E Q F G Y G A P G S G A A G D L V F A D F T G G G I G H V G I A T G D G Q M I N A P Y P G T T V R Y D P I P A E N L V G Y R T V V * |
Maingene=or1640; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or1671 - or1673, or1673 | 1742984 | 1743517 | putative pseudogene |
G
T
G
A
C
C
G
A
A
G
C
A
G
A
G
A
A
G
G
T
G A C G A A A A A G G C C G T A A C G G C C G A G G A A G C G C G C G A C G C C C T C A G G G A C G T G C T C G A C C C G G A G T A C C C G A T C A G C C T C G T A G A C C T C G G C C T G A T C C G G G G C G T C A A G A T G G T C G G C G A G A A G G C C G A G A T A A A G C T C A C C T A C A C C T G T A T G G G T T G C C C G G C G A T G G A C A T G A T C C A G G A G G A C A T C G A G G A G C G T C T A C T T C A G G T T G A C G G T A T A T C T G A A G T A G A C A T C G A G G T C G T G T G G G A C A C C T G G A G C C G C A A G G A C A T C A C G C C G C T C G G C A A A A A G C A G C T C A A G G G C G T C G G G G T G G T C T A G G T G C G A C C G G T A G A G A A C T A C G A G G T G T T T A C C G C G C G G G T A G G G G A A G A C T C C C C G C T G C G G C A C A A C G G G A A C G T C C G G G C A T C C G A G C C C G T A G A C G C C G C T G T T T A C G C G C A C C T G A T G T A C G A C G A G T G G C G C T G G C G C G A G A T G T T C G T C G T G C C G G A C A A G G A C A T C A T C A G G G T T A T C C G G C C G A G C T A A
V
T
E
A
E
K
V
T
K
K
A
V
T
A
E
E
A
R
D
A
L R D V L D P E Y P I S L V D L G L I R G V K M V G E K A E I K L T Y T C M G C P A M D M I Q E D I E E R L L Q V D G I S E V D I E V V W D T W S R K D I T P L G K K Q L K G V G V V * V R P V E N Y E V F T A R V G E D S P L R H N G N V R A S E P V D A A V Y A H L M Y D E W R W R E M F V V P D K D I I R V I R P S * |
Maingene=or1673; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to second shortest homolog in length | |
| or1682, or1682 - or1683 | 1754712 | 1755239 | putative pseudogene |
G
T
G
C
A
C
T
T
T
C
G
C
G
A
G
A
C
G
G
A
C G T A A C C G G G C A T C C C G C C C G C C G G C G G G C G C G G C T C G G G A T G G G G C T C G T C C C G C A G G G G A G G G G C G T G T A C C C G A A C C T G A G C G T C G A G G A G C A G C T C G A C C T G C C G C C C G G A A G G A A G A A C G G C G G C T C G C A G G G G A G C A A G G G G A C C G T C T A C G A G C T C T T C C C G A G G C T C G C C G A A C G G A A G C G C A A C A G C G G C A G C C A G C T C T C C G G C G G G G A G C A G C A G A T G C T C T C C A T C G C C C G T G C G C T G C G T G G A G A G C C G G A G C T A C T C C T G C T C G A C G A G C C T T C G G A G G G G C T T G C G C C G C T T G T C G T C G A G C A G G T C G G A G A G G T G C T A A A G G G G C T C A A G G C G C G G G A G C T G T C G A T C C T C C T C G T C G A G C A G A A C C T G A G C C T C G C G C T C T C G G T C G C C G A C C G G G T G T A C A T C A T G A A C A A G G G A C G C G T C G T C C A T G A G G C G A G C G C C G G A G A A C T C A A G A A G G A C A A G G A G A C G C A G C A C A G G C T C C T C G G A G T C T G A
V
H
F
R
E
T
D
V
T
G
H
P
A
R
R
R
A
R
L
G
M G L V P Q G R G V Y P N L S V E E Q L D L P P G R K N G G S Q G S K G T V Y E L F P R L A E R K R N S G S Q L S G G E Q Q M L S I A R A L R G E P E L L L L D E P S E G L A P L V V E Q V G E V L K G L K A R E L S I L L V E Q N L S L A L S V A D R V Y I M N K G R V V H E A S A G E L K K D K E T Q H R L L G V * |
Maingene=or1682; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or1698 - or1700, or1700 | 1774772 | 1775092 | putative pseudogene |
A
T
G
G
C
G
G
A
G
A
A
A
A
C
G
A
C
G
G
G
C G C G G A C G A G C G G C G C G G C T A C A T A A A G G A A G G C G A C A A G G A G A A G C T G A A G C T C C G G C T C A A G C G C A T C G A G G G C C A G G T A C G G G G C G T C C A G C G C A T G A T C G A G G A A G A G G C C T A C T G C G T G G A C G T C A T C A C C C A G A T C T C C A G C T A C A T G G C C G C C T C G G A A A A G G T C G C C T C G C T C G T C C T C A A G G A C C A C A T G G A C C A C T G C G T C A A G G C C G C C C T C A G G G A C G G C G G C G A G C G G G C C G A C G A G A A G A T G G A C G A G C T G A A G G A G G C A A T A G A C C G C T T C C T C A A G C T C G A C T G A
M
A
E
K
T
T
G
A
D
E
R
R
G
Y
I
K
E
G
D
K
E K L K L R L K R I E G Q V R G V Q R M I E E E A Y C V D V I T Q I S S Y M A A S E K V A S L V L K D H M D H C V K A A L R D G G E R A D E K M D E L K E A I D R F L K L D * |
Maingene=or1700; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or1708 - or1709 | 1785099 | 1785474 | complement (join (1785099..1785155, 1785155..1785262, 1785262..1785468)) | pseudogene, missed gene |
C
C
G
A
C
A
G
A
C
G
G
T
T
G
C
G
A
G
T
A
G C C A A G A C G G G C C G T C C G G G A G A T C T G C A C G G A A G T T T C C G G G G A C G C C T A C T G G C A C A A G C T C G A C A C G C G C C G G G A G T G C C C T G G A A G G G T T T G A T C C G C G C A A C A A T C C C C A A A A A A C C G C G C T G A G C C G G C A C C C G G A C C G G A C G A G A G G G C G G T C G T T C T G G A G G A G A T C G A C C C T C C G G C G G A C A A C G C C C A G C C G G C T C A C G T T C A G A T C A A T G T T G C A C A G A C G C C C C T C A G G T A C G G C T C C G G G C G G C A G A A A C G G G A G T G C C T C C C G A T G G T A G C G A G C A A A G A A A C C C G G C T C C G G T C C T T C G G C G T C G C A G A G C C C G C G G A A C A C G A A G G G C A G C T T T G A
P
T
D
G
C
E
*
P
R
R
A
V
R
E
I
C
T
E
V
S
G D A Y W H K L D T R R E C P G R V * S A Q Q S P K N R A E P A P G P D E R A V V L E E I D P P A D N A Q P A H V Q I N V A Q T P L R Y G S G R Q K R E C L P M V A S K E T R L R S F G V A E P A E H E G Q L * |
Comments=Pseudogene, >1 frameshift are present |
| or1708 - or1709, or1709 | 1785471 | 1785980 | putative pseudogene |
A
T
G
G
C
G
C
T
G
A
A
G
A
G
A
G
G
C
T
G
G A C G G G G C G G T T C T T T G A G G A C T T C G A G G T C G G G G A C G T C T A C G A G C A C C C G C T G G G A C G G A C G G T T A C A A C G A C G G A C A A C C T C T G G T T C A C G C T G C T T A G C C A G A A C A C C G C G C C G G T C C A C T T C G A C C A C A A C T A C G C G A G C G G G A C G G A G T T C G G C A G G C C G C T C G T G G A C T C G A C G T T C A C G C T C G C G C T G G T C A C G G G C C A G A G C G T A A C C G A T G T C T C G C A G A A C G T C T T T G C G A A C C T C G G T T G G G A C G A G G T C C G G C T T C C G G C G C C G G T C T T C G A G G G G G A C A C G A T C T A C T C C A G A A G C G A G G T T C T A C A G G C G C G T G A G T C G C G C T C C C G C C C G A G C G T C G G C A T C G T C A C G G T C A G G A C G A C T G G C T A C A A C C A G G A G G G G A C G G T C G T G A T C C A C T T C A A G C G C A C C C T C A T G G T C T A C A A G C G G G A C C A C G C T C C G G C C G A A A C G A C C C G G C C C G C T C C G A A G G A C C T C C C G T G A
M
A
L
K
R
G
W
T
G
R
F
F
E
D
F
E
V
G
D
V
Y E H P L G R T V T T T D N L W F T L L S Q N T A P V H F D H N Y A S G T E F G R P L V D S T F T L A L V T G Q S V T D V S Q N V F A N L G W D E V R L P A P V F E G D T I Y S R S E V L Q A R E S R S R P S V G I V T V R T T G Y N Q E G T V V I H F K R T L M V Y K R D H A P A E T T R P A P K D L P * |
Maingene=or1709; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or1720 - RNA_29 | 1796645 | 1796892 | complement (join (1796645..1796698, 1796698..1796892)) | pseudogene, missed gene |
G
T
G
C
G
G
G
G
A
A
G
C
G
A
C
C
T
C
A
A
G G G A G G G C T G G A G A T C G C C T G G T C A A A G G C G G A G A T C A C C G G C A G C G C C T G G A G C G G G A T C G A A T C G C T T T T G A A T G A G G G T A G C T A A A G C A G T T G T C T A T G G G G A G G G C A T T G C G C C G G G G T T G A T G G C G G A T T C T G T A A G C T G C G T A C C G G A T C G C C T T G G C G C G A C C T A C C G G A A G C A C A C G G T T C C T G G C A G A A G G G C T T C G A C T G C T A C G A T T G T A G G A G A C G C
V
R
G
S
D
L
K
G
G
L
E
I
A
W
S
K
A
E
I
T
G S A W S G I E S L L N E G S * S S C L W G G H C A G V D G G F C K L R T G S P W R D L P E A H G S W Q K G F D C Y D C R R R |
Comments=Pseudogene, start/stop is absent |
| or1753, or1753 - or1754 | 1833294 | 1833935 | pseudogene |
A
T
G
A
T
G
A
A
C
A
G
G
G
A
C
A
G
G
C
T
C G G C T T C T G G G C G C G G C T T A T C G C G A T C T T T C T C G C G C T C G T G T T T A T C T C G T C G T T C G T G T T T C T C G G G A T C G G G G G G A A C G T C T C G T A C A A C C T C T T C G A C C T G A T C G G C G G C T C C G A C G A T C A G C A G A A C C A G C A G T C G C A G G C G A A C C T C G A C G A G C A G A T A C A G A A C G C C G A G C G C G A G T A C C G G G A G A A C C C C G G G G A C C C G C A G G C C G T C C A G A C C C T C G C C G G G C T C T A C T T C T C C A A C T C G C A G T T C G A A G A G G C C G A G C G C G T C C T T C G G G A G G G C C G G G A G G C G A A C C C G G A G A A C G C C G A G C T T G C G A G C C T C C T C G G G T C G G T C T A C G C C C A G C G C G C C G C C C A G T C C G G G G A G G A G A A C C G C G A G A G G C T C T A C C G C G A C T C T G C C G A G C A G T A C G C A G C G G C G G C C G A G A T A G A G C C C G A G A A C T C C G A C T A C C C G C T G C T C G C C G G G C A G A G C T T C G A G C A G G C C G G G G A C G C C G G G C G G G C T A T T C A G T T T T A C A A C A G C T A C C T C G A C C T C G A G C C C G A C G G C G A G A A C G C A C A G G C C G T T C G G G A G C G C A T A G A C A C G C T C C T C A C G C C C G C A G A G A C G A C C G G G G C C G C A G A A G A A G G G T A G
M
M
N
R
D
R
L
G
F
W
A
R
L
I
A
I
F
L
A
L
V F I S S F V F L G I G G N V S Y N L F D L I G G S D D Q Q N Q Q S Q A N L D E Q I Q N A E R E Y R E N P G D P Q A V Q T L A G L Y F S N S Q F E E A E R V L R E G R E A N P E N A E L A S L L G S V Y A Q R A A Q S G E E N R E R L Y R D S A E Q Y A A A A E I E P E N S D Y P L L A G Q S F E Q A G D A G R A I Q F Y N S Y L D L E P D G E N A Q A V R E R I D T L L T P A E T T G A A E E G * |
Maingene=or1753; Extension FAILED; Comments=Pseudogene, failed extension, extended gene length>100aa and < 50% the length of the second shortest homolog | |
| or1770, or1770 - or1771 | 1849595 | 1850566 | pseudogene |
T
G
G
G
C
G
A
A
G
G
A
C
G
T
C
G
A
G
C
C
G G G C C A G C G C C T G C G C T C G A C G T T T C T C G C T C G G G A G T C C T C G A T C C G C A A C G A C T C C C G C G G G G T C C C G T A T C T C T C G A C G A C G C T C G T G G A C A A G A C G G G C A C G C T C G A C G C G C G G A T G T G G A A C C T C C C G A A C G A G C T T A C C G A A G G A C C G C C G C C C T C G G G C T A C G T C C A C G T C G A G G G C C A G A C C C A C G A G T A C C G G G G G A T G C T C C A G C T C A A G G T C G A G C G C C T C A G G C G C C T C A A G G C C G A C G A G G T C G A G G A G G A G G A C T A C G T C C C G G C C T C C G A G A G C G A C C G G C G G G C G A T G G C C G C C G A G G T C C T T G A G G C C G G C T G G G C G C T G G A G A A C G A C C A C C T C C G G G A C C T C T T C G G C T C G A T G G C C G C C G A C C G G G A G C T C T G G G A G G C G T T C T G C G A G G C C C C G G C G G C A A A G A C G A T G C A C C A C G C A C G G G T C G G G G G G C T G C T G G A G C A C T C G C T G C A G T G C G T C C G G G C G G C G A A G G C G C T C G C A A G G C T C T A C C C G G T A A A C G A G G A C C T G C T G G T C T T C G G G G C G A T C T T C C A C G A C A T C G G C A A G G T C C G G G A G C T C T C C T G G G A G A A G G G C G G C T T C G C C T A C A C C A C C G A G G G G A G G C T C C T C G G G C A C G T C G T G C T C G G G G A G A G G A T C G T C T C C T C C T A C G T C G A G G G A C T G C C G G A G T T C C C C G A G G A A C T G G C C G T C G A G G T C T C G C A C C T G C T C C T G A G C C A C C A G G G A G A G A C G C A G T A C G G C T C C C C C G A G G A G C C G A A G A C G C T C G A A G C C A T C C T G C T C C A C T T C G T C G A C A A C C T C G A T G C G C G G G T G G A G A T G T A C C G G G A G A G C A C G A A G A A C G T C A G C C C C G G A G G C T G G A G C C A T C A C G A G A A C C C C T T G A G G C G C G C T C T C T A C G T T C C G G A A G A C C G A A C C T G G A G C G T C G C T C C C G G T G A C G G C G A C G A G G C C T G A
W
A
K
D
V
E
P
G
Q
R
L
R
S
T
F
L
A
R
E
S
S I R N D S R G V P Y L S T T L V D K T G T L D A R M W N L P N E L T E G P P P S G Y V H V E G Q T H E Y R G M L Q L K V E R L R R L K A D E V E E E D Y V P A S E S D R R A M A A E V L E A G W A L E N D H L R D L F G S M A A D R E L W E A F C E A P A A K T M H H A R V G G L L E H S L Q C V R A A K A L A R L Y P V N E D L L V F G A I F H D I G K V R E L S W E K G G F A Y T T E G R L L G H V V L G E R I V S S Y V E G L P E F P E E L A V E V S H L L L S H Q G E T Q Y G S P E E P K T L E A I L L H F V D N L D A R V E M Y R E S T K N V S P G G W S H H E N P L R R A L Y V P E D R T W S V A P G D G D E A * |
Maingene=or1770; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, extend to start of alignment | |
| or1789, or1789 - or1790 | 1870795 | 1871730 | putative pseudogene |
G
T
G
G
C
G
T
T
C
G
G
G
G
G
C
G
G
G
A
C
G G G G C T T C C G G T G C T G C T C A G G G G G C T C A G G G A C T C G G T C T C G G A C C T C G T C G C G G T C G T G A C G G T G G C G G A C G A C G G G G G G T C G A G C G G G A G G C T C C G G C A G G A A C T C G G G G T T G C G C C G C C G G G A G A C G T G A G G A A C T G C C T T G T C G C G C T C G C G G G G A G G C G G C G G C T C G C G G A G G T C T T C A A C T A C C G C T T C G A G G C G G G A G A G G A G C T T C G G G A C C A C G C C G T C G G C A A C A T C A T C A T C G C C G C G C T T G C G G A C A T G G C G G G C T C T T T C G A G G A G G G C G T A G A T C A G G C C G C G C G T T T C T T G C G C G T G A A G G G A C G G G T C T A T C C G G C C G C G A C G G A G A G C C T C A C G C T C G T G G T G C G C T A C G C G G A C G G T A C G C T C A C A C G C G G C G A G T C G G T C G T T C A C G A G A C G C T C A A G C A G G T C G A G C G C G T C T C C G T C G A G C C T G A G G G G A C C C C G G C T C C C G A G G C C G T G A T C T C G G C C A T A A G C G G G G C C G A C C T C G T G G T T C T G A G C C C G G G A A G C C T C T T T A C G A G C A C C G T G C C G G C G C T T C T C G G G G G C G G G G T G A A G G A G G C C C T C G C G A G G T T C T C C G G A C C G G T C G T C T A C G T A G C C A A C G T T A T G A C G C A G C C C G G A G A G A C G G G T G G T T T T T C G G T C T C G G A T C A C G T A G A G G C G A T C T C G G C C C A C G T C G G G C C G G T C G T T A C G G A C G T G C T C G T A C A C T C C G G G G A G T T G C C G A A G G A C C T G A T C G C C C G C T A C C G A G T C G A G G A C G C C G C C C C G A C C G T C G T T G A C C G G G A G G C T C T C G C C G C G C T C G G G G T G C G G C T G C A C G A G G C G G A C G T G C T C T C C G A C A A G G G C G A G G T C G G G G T C C G C C A C G A C C C G G A G A A G C T T G C A C G G G A G G T C C T T A A A G C T G C C C T C G T T C G C C G C T G A
V
A
F
G
G
G
T
G
L
P
V
L
L
R
G
L
R
D
S
V
S D L V A V V T V A D D G G S S G R L R Q E L G V A P P G D V R N C L V A L A G R R R L A E V F N Y R F E A G E E L R D H A V G N I I I A A L A D M A G S F E E G V D Q A A R F L R V K G R V Y P A A T E S L T L V V R Y A D G T L T R G E S V V H E T L K Q V E R V S V E P E G T P A P E A V I S A I S G A D L V V L S P G S L F T S T V P A L L G G G V K E A L A R F S G P V V Y V A N V M T Q P G E T G G F S V S D H V E A I S A H V G P V V T D V L V H S G E L P K D L I A R Y R V E D A A P T V V D R E A L A A L G V R L H E A D V L S D K G E V G V R H D P E K L A R E V L K A A L V R R * |
Maingene=or1789; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or1798, or1798 - or1800 | 1881911 | 1884766 | putative pseudogene |
A
T
A
A
C
A
G
T
C
C
G
G
G
G
C
G
C
A
C
G
C G A A C A C A A C C T C A A G G A C A T C A C C G T C T C G A T G C C C C G G G A C G A G A T G G T C G T C G T T A C G G G C C T C T C C G G C T C G G G G A A G T C G T C G C T C G C C T T C G A C A C G A T C T A C G C C G A A G G A C A G C G C C G C T A C G T C G A G T C T C T C T C G G C C T A C G C C C G G C A G T T C C T C G G C C A G A T G G A C A A G C C G G A C G T G G A C C A C A T C G A C G G C C T C T C C C C G G C G G T C T C C A T A G A C C A G A A G A C G A C C T C G A A C A A C C C C C G C T C G A C G G T G G C G A C G G T G A C G G A G A T C T A C G A C T A C C T C C G C C T C C T C T A C G C C C G C G C C G G T C G T C C G C A C T G C C A C G T C T G C G G C T T T C C C G T C T C C T C C T C G A C C C C G C A G C A G A T G G T C G A G A A G G T C A T G G C T C T C C C G G A G A A G A C G C G C T T C A T G G T C C T C G C G C C C G T C G T C C G C G G T C G C A A G G G C G A G T A C G G A A A G C T C T T C A A G G A G C T T G C G G A A G A G G G T T A T G C C A G G G T T C G A G T G G A C G G C G A G G T A T A T G A A C T T C C G G T A G A C C T G A A C C T C G A C A A G A A G T A C A A G C A T G A C A T C G A G G T C G T C G T G G A C C G C C T C T C C A T G C G G G G G G G A A T A G A G C G G C G G C T G A C G G A C T C G G T C G A G A C C T C G C T C C G G C T G G C T G A A G G T T T G G T T C A G G T A G A G A C C G T C G A G C G G G A C G G C T C A C C G G G C G A G T C G A T G T T G T T T T C G G A G A A C T T C A G C T G C A C G A A C T G C G G G G C T T C G A T C G C G G A G A T A C A G C C G A G G A C G T T C T C G T T C A A C A G C C C G C A C G G G G C G T G C G A C C G G T G C G A C G G G C T C G G G A G T C G C C T T G A G A T A G A C C C G G A C C T C G T G G T G C C G A A C G A A G A C C T T T C G A T C A A C G A C G G C G C G C T C G C G C C G T G G G C G A A C T C G T C G A G C G A G T A T C A G G A C A G C G T G C T C T G G G C G C T C T C G G A T A A G T T C G G G A T A G A C C T G G A C A A G C C G T G G C G G G A G C T T C C G G A G G A G C A C C G G G A G A T C G C G C T C T A C G G G A C G G G G G G G G A G A G G A T C T A C A T C T C C T A C C G C A A C C G C T A C G G G C G C A A G C G C C A G T A C A T G A C G C A G T T C G A C G G C G T C G T C G G G A A C C T C C A G A G G C G T T A C G C C G A G A C C G A C T C G G A G T A T C G T C G G G A G A A G A T C G A G G A G T A C A T G T C C C A C G T G C C G T G C C C G A A G T G C A A G G G C G C G A G G C T C C G G C C C G A G G C G C T C G C G G T T A C G G T C G G C G A G C G G A A C A T C G C C G A G T T C A C G G C C C T G A G C G T C A A G G A G G C G C A G A G C T T C T T T G A C G G G A T C G G C T T C A C G G A G C G C G A G T G G C T G A T C G G A G A G C G G G T G A T A A A G G A G A T C C G C G A G C G A C T C G G C T T T C T C G T G G A C G T C G G G C T C G G C T A C C T G A C G C T C A A C C G T T C G G C C G G G A C G C T C T C G G G C G G C G A G G C G C A G C G G A T A A G G C T C G C G A G C C A G G T C G G G A G C G G G C T C G T G G G C G T G C T G T A C G T G C T C G A C G A G C C G T C G A T A G G G C T C C A T C A G C G C G A C A A C A A G C G G C T C C T C G A C A C G C T C G T G A G G C T G C G C G A C C T C G G G A A C A C G C T C G T T G T C G T G G A G C A C G A C G A G G A C A C C A T A C G C A C C G C C G A C T A C G T T A T A G A C G T C G G G C C G G G A G C G G G A G T G A A C G G C G G C G A G G T T G T A G C C T G C G G T T C C G T C C G G G A C A T C G A G G C C G A G C C G C G C T C C A T C A C C G G A G A C T T C C T C T C G G G C C G C A G G C G C A T C G A G C C G C C C G A G A A G C G C C G G G A G C C T G C G G G G G A G A T C T C C G T A A A G G G C G C G G A G G A G A A C A A C C T G C G C G G C G T A G A C G T C T C G T T C C C G C T C G G G G T C T T C A C G A G C G T A A C G G G A G T T T C T G G G A G C G G G A A G A G C A C G C T C G T G A A C G A G A T C C T C T T C A A G G C C C T C G C A A A C G C C G T G A G C C G G G G C A A G C A C C G G C C C G G C A G G C A C A A G G G A C T C G A A G G C G T C G A G A A C G T G G A C A A G G T C A T A G A C A T A G A C C A G T C G C C G A T C G G C C G T A C C C C G C G C T C C A A C C C G G C G A C G T A C A C A A A G G T C T T C G A C C A C A T A A G G C A G C T C T T C T C G C A G A C G G C G G A G G C G A A G A T C C G G G G C T A C A A G C C G G G C C G G T T C T C G T T C A A C G T C A A G G G C G G G C G G T G C G A G G C G T G C A A G G G C G A C G G G C A G A T C C G C A T C G A G A T G C A C T T C C T C C C G G A C G T C T A C G T G C C G T G C G A G G T G T G C A A G G G C C G C C G C T A C A A C A A C G A G A C G C T C C G G G C G A C G T A C A A G G G A A A G T C G A T C G C C G A C G T C C T T G A G A T G A C C G T C G C C G A G G C G T G C G A G T T C T T C G A G C C C G T G C C C G C C A T C G C C C G C A G G C T C A A C A C C C T C A A C G A C G T C G G G C T C G G C T A C G T G A G G C T C G G G C A G C C C G C A A C G A C G C T C T C G G G C G G C G A G G C G C A A A G G G T G A A G C T T G C G A G C G A G C T C G G C A A G A G A G C A A C G G G A A A G A C C G T C T A T A T C C T C G A C G A G C C G A C G A C C G G A C T C C A C T T C G C C G A C G T C G A G C G G C T G C T T C A G A T C C T T C A C A G G C T T G T G G A C G C C G G G A A C A C G G T C A T C G T C A T C G A G C A C A A C C T C G A C G T T A T C C G C T C C T C G G A C T A C G T C G T A G A C C T C G G C C C C G A G G G C G G C G A T G G C G G G G G A G A G A T T G T C G C C A C C G G A A C C C C C G A G G A G G T C G C T C G C T C C G A G C G C T C C C A T A C C G G C C G C T T C C T C A A G G A G T T C T T T G G G G G A C C A C A G A A G T C C G G G A A G G C C G T C G C C C G C G C A A G C T A G
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D E M V V V T G L S G S G K S S L A F D T I Y A E G Q R R Y V E S L S A Y A R Q F L G Q M D K P D V D H I D G L S P A V S I D Q K T T S N N P R S T V A T V T E I Y D Y L R L L Y A R A G R P H C H V C G F P V S S S T P Q Q M V E K V M A L P E K T R F M V L A P V V R G R K G E Y G K L F K E L A E E G Y A R V R V D G E V Y E L P V D L N L D K K Y K H D I E V V V D R L S M R G G I E R R L T D S V E T S L R L A E G L V Q V E T V E R D G S P G E S M L F S E N F S C T N C G A S I A E I Q P R T F S F N S P H G A C D R C D G L G S R L E I D P D L V V P N E D L S I N D G A L A P W A N S S S E Y Q D S V L W A L S D K F G I D L D K P W R E L P E E H R E I A L Y G T G G E R I Y I S Y R N R Y G R K R Q Y M T Q F D G V V G N L Q R R Y A E T D S E Y R R E K I E E Y M S H V P C P K C K G A R L R P E A L A V T V G E R N I A E F T A L S V K E A Q S F F D G I G F T E R E W L I G E R V I K E I R E R L G F L V D V G L G Y L T L N R S A G T L S G G E A Q R I R L A S Q V G S G L V G V L Y V L D E P S I G L H Q R D N K R L L D T L V R L R D L G N T L V V V E H D E D T I R T A D Y V I D V G P G A G V N G G E V V A C G S V R D I E A E P R S I T G D F L S G R R R I E P P E K R R E P A G E I S V K G A E E N N L R G V D V S F P L G V F T S V T G V S G S G K S T L V N E I L F K A L A N A V S R G K H R P G R H K G L E G V E N V D K V I D I D Q S P I G R T P R S N P A T Y T K V F D H I R Q L F S Q T A E A K I R G Y K P G R F S F N V K G G R C E A C K G D G Q I R I E M H F L P D V Y V P C E V C K G R R Y N N E T L R A T Y K G K S I A D V L E M T V A E A C E F F E P V P A I A R R L N T L N D V G L G Y V R L G Q P A T T L S G G E A Q R V K L A S E L G K R A T G K T V Y I L D E P T T G L H F A D V E R L L Q I L H R L V D A G N T V I V I E H N L D V I R S S D Y V V D L G P E G G D G G G E I V A T G T P E E V A R S E R S H T G R F L K E F F G G P Q K S G K A V A R A S * |
Maingene=or1798; Extension SUCCEEDED with start of type NONCANSTART; Comments=For manual analysis, pseudo or non-canonical start codon, extended gene length > 80% the length of the second shortest homolog | |
| or1804, or1804 - or1805 | 1889719 | 1891710 | pseudogene |
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C A A C T A C C G G C C G A C C G G C G A C C A G C C G C A G G C C A T C G A G C G G C T C G C G A G C G G G A T C G C G G G C G G C C T G G A C A T G C A G A C G C T G C T A G G G G T G A C C G G T T C G G G G A A G A C G C A C A C G A T G G C G C G C G T C A T C G A G A A G G T C G G G A A G C C C G C G C T C G T G A T G G C G C A C A A C A A G A C G C T C G C G G C G C A G C T T G C G A G C G A G T T C G G G G A G T T C T T C C C G A A C A A C G C C G T C G A G T A C T T T G T C T C C T A C T A C G A C T A C T A C C A G C C C G A A G C G T A C G T C C C G T C G T C T G A T A C G T T T A T C G A G A A G G A C G C C C A G A T C A A C G A G G A C A T C G A C C G C C T G A G G C A C T C G G C G A C G A G C A G C C T G T T C A C C C G G T C G G A C G T T A T A G T C G T T G C C T C G G T G T C G G C T A T T T A C G G T C T C G G G A G C C C G G A G G A G T A C C G C T C G A A G A T G G T C G T T C T T C G G G A G G G C G G C T T T T A T G A C C T C G A C G A C G T C T T G C G G G A C C T G G T G A A G A T C C A G T A C G C A A G G A A C G A T T A C C A G C T C G C G C G G G G G A A C T T C C G G G T G A G G G G G G A C G T G C T G G A G A T C C A G C C C G C C T A C C A G G A C A C G G T C T A T C G C G T C T C G T T C T T C G G G G A C G A G G T C G A G G G G A T G G C T G A G G T G G A C C C G C T T A C G G G C G A G G T C C T G C G C G A G C A C G A G C T G C T T A C G A T C T A C C C G G C C A C G C A C T T C G T C A C C G A C G A G G A T C G G A T G A A G G T C G C G A C G G C G A A T A T C G A G G C G G A G C T T G A G G A G C G C T A T G C G G A G C T C G A G T C T C A G G G G A A G G T G C T G G A G G C G T A C C G A C T G A G G C A G C G G A C T C A G T A C G A C C T T G A G A T G A T G C G C G A G C T C G G G T A C T G C T C G G G C A T C G A G A A C T A C T C C C G T C A C A T G G A C G G C C G C C C T C C C G G C T C G A C G C C G T A C A C G C T T C T C G A C T A C T T C C C G G A C G A C T A C G T A A C G T T C A T T G A C G A G T C G C A C A T C A C G C T G C C A C A G A T C C G G G G G A T G T A C A A C G G C G A C C A G T C G C G C A A G G G T A C G C T C G T A G A G C A C G G C T T C C G C C T G C C G A G T G C A A A G G A C A A C C G G C C G C T C A C G T T C G A C G A G T T C C T C T T G A A G A G C A A C C A G C T C G T C T T T G T C T C G G C G A C G C C G G G G C C G T A C G A G C T T G A G A A C T C C G G G C A G A T C G T G G A G C A G A T C A T C C G C C C G A C G G G G C T C C T C G A C C C G C C G G T T G A C G T C C G G C C G A C G A A G G G G C A G A T A G A C G A C C T G A T G A A C G A G G T T G C G G T G C G C G T C G A G C A C G G C G A G C G G G T C C T T A T A A C G A C G C T G A C G A T A A A G A T G G C C G A G G A C C T G A C G G A C T A C C T C C T T G A G C A C A A C G T C A A G A C G A G G T A C A T G C A C T C G A A C A T A G A G A C C C T G G A C C G C A T C C A G A T C A T C C G C G G C C T C C G C A C C G G C G A G T T C G A C G T G C T C G T C G G G A T C A A C C T T C T T C G C G A G G G G C T C G A C C T T C C T G A G G T C A C G C T C G T C G C C A T C C T G G A T G C G G A C A A G G A G G G C T T T C T G C G C G G C G A G C G G G C G C T C A T A C A G A C G A T C G G C C G C G C C G C C C G A A A C G C A G G C G G C C G G G T C A T C A T G T A C G C C G A C A A G G A G A C C G A C G C G A T G C G C G C G G C C A T C G G G G A G A C G A A C C G A A G G C G C G A G A T C C A G A A G G C C T A C A A C G A G C G C A A C G G C A T C A C G C C G A C G A C G A T C G C G A A G G G C G T C T C G G A C A T C C T T A T C G C C G C C G A A G C G A A G G G C C T G T A C A A G A C C C A G C G C C A G A A G G C C G C C G A G C G G A A C A C C T C C G G C G A C C C G G A C G A G C T G C G C G A G C T T A T A G C C A A C C T C G A A G C C G A G A T G A T G G C C G C C G C C G A A G A C C T C A A G T T C G A G T A C G C C G C C A A G C T C C G C G A C G A G A T A A A G G A C C T C G A A C G C C A G C T A C A G G A A G C C A C G A G C T A G
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R L A S G I A G G L D M Q T L L G V T G S G K T H T M A R V I E K V G K P A L V M A H N K T L A A Q L A S E F G E F F P N N A V E Y F V S Y Y D Y Y Q P E A Y V P S S D T F I E K D A Q I N E D I D R L R H S A T S S L F T R S D V I V V A S V S A I Y G L G S P E E Y R S K M V V L R E G G F Y D L D D V L R D L V K I Q Y A R N D Y Q L A R G N F R V R G D V L E I Q P A Y Q D T V Y R V S F F G D E V E G M A E V D P L T G E V L R E H E L L T I Y P A T H F V T D E D R M K V A T A N I E A E L E E R Y A E L E S Q G K V L E A Y R L R Q R T Q Y D L E M M R E L G Y C S G I E N Y S R H M D G R P P G S T P Y T L L D Y F P D D Y V T F I D E S H I T L P Q I R G M Y N G D Q S R K G T L V E H G F R L P S A K D N R P L T F D E F L L K S N Q L V F V S A T P G P Y E L E N S G Q I V E Q I I R P T G L L D P P V D V R P T K G Q I D D L M N E V A V R V E H G E R V L I T T L T I K M A E D L T D Y L L E H N V K T R Y M H S N I E T L D R I Q I I R G L R T G E F D V L V G I N L L R E G L D L P E V T L V A I L D A D K E G F L R G E R A L I Q T I G R A A R N A G G R V I M Y A D K E T D A M R A A I G E T N R R R E I Q K A Y N E R N G I T P T T I A K G V S D I L I A A E A K G L Y K T Q R Q K A A E R N T S G D P D E L R E L I A N L E A E M M A A A E D L K F E Y A A K L R D E I K D L E R Q L Q E A T S * |
Maingene=or1804; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, extend to start of alignment | |
| or1874, or1874 - or1875 | 1967198 | 1968037 | pseudogene |
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G G A G T A C A C G C G C T C C G C G C C C C C G G A G A C G G A G A G C G G C G T C G C G C A G A C C G A C G G G G T C T T C A C C A A G T G C G A C G G C T G C G G G G A G G C G A T C T A C G A A A A G G A C C T C C G G G C G C G C T T C A A C G T C T G T C C G C A C T G C G A G C A C C A C T A C C C G C T G C C C G C G A C C G A C C G C A T C C G C C T C C T G A C G G A C G C C G G G A C C T T C C G C G A G C G C G A C C A C G G C C T C G T C A C C G A C G A C C C G C T G A A C T T C G A G G G C T A C G C C G A G C G G C T C C A G A A G G C C C G C A A G A A G A G C G G C C T G A A C G A C G C C G T C G T T A G C G G G A T G G G G G A G A T A G G A G G G C A C T G C G T C G C C C T C G C C G C G C T C G A C T T C C G C T T T A T C G G G G G C T C G A T G G G G A G C G T C G T C G G G G A G A A G G T A G C C C G C A C G G T A G A G C T C G C C G C C T C C G A G G A C C T G C C G C T C G T T A T C G T C A G C G C C T C C G G A G G G G C G C G G A T G T T C G A G G G G A T C T A C T C C C T C A T G C A G C T G G C G A A G A C G A G C G T G G C A T T G T C G C G G T T C A A C G A T A T G A G G A G A C C G T A C A T T T C G G T T C T C A C G G A C C C G A C G T T T G G T G G G G T A A C G G C G T C G T T T G C G A C G G C G G C G G A T G T G G T G A T C G C C G A G C C G G G G G C A A G G G T C G G G T T T G C G G G G G C G C G G G T G A T C G A G C A G A C G A C G A A G G A G C G C T T G C C G G A G G G T T T C C A G A C G G C G G A G T T T C A G A G G G C G C A C G G G A T G G T G G A C C G G A T C G T C C A C C G G C T C G C G C T C A A G G G C G A C C T G G A G C G A G C C T T G G G G T T T T T G T C G T G A
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V A Q T D G V F T K C D G C G E A I Y E K D L R A R F N V C P H C E H H Y P L P A T D R I R L L T D A G T F R E R D H G L V T D D P L N F E G Y A E R L Q K A R K K S G L N D A V V S G M G E I G G H C V A L A A L D F R F I G G S M G S V V G E K V A R T V E L A A S E D L P L V I V S A S G G A R M F E G I Y S L M Q L A K T S V A L S R F N D M R R P Y I S V L T D P T F G G V T A S F A T A A D V V I A E P G A R V G F A G A R V I E Q T T K E R L P E G F Q T A E F Q R A H G M V D R I V H R L A L K G D L E R A L G F L S * |
Maingene=or1874; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, extend to start of alignment | |
| or1880, or1880 - or1881 | 1971463 | 1972107 | pseudogene |
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G G A C C T C G T T C A G C C G G G G C T G C G C G T A C C C G T A A C G G C G A G C G A C G A G C T T T T C T T C G A G G C C G C G G A G A T A G G G C G G G A G A T C G T G T G G C T T C A C A C C T T C G G C G A G C G G T T C G C G G A C G C T G G G G C G A G C C G A C C G G C G A G A C C G C C C C G C C T T G C G G A C G C G C C C C G T A T A C C G G C G G A C G G C G C G A T A C C G C A G G G C T C G A T G C C G G A C G A G A T C C T C T A C G A C G C C G G G A G C C G C A G G C T G C A C G T C G G G G A C G G G T A C G T G G A G A A C G T G G A C C G G C G G G T G T G G G A G T A C G A G G T C T C C G G C A A G C A G G T G C T C A G G C A G T G G T T C A G C T A C C G C A G G G C G A A C C G C G A G C G A C C G A T C A T C G G C G A C C G T C G C C C G C C G T C G A A G C T C G G G G A G G T G C A G C C C G A G A G C T G G C C C G C C G A G T A C A C G A G C G A G C T T C T G A A C G C G C T G A A C G T T C T C G G G C G G C T T G T C G A G C T G G A A G A A G C T C A G G C C G G G C T G C T C G A A C G G A T C T G C T C C T C G G A G A T G A T A A C G G C C G A C G A G C T C G G A G A G G T C G G C G C G C T C G C G G C T C T G G A A A G C G A C G T T C G C A C G G C G G G A C A G G C G A A G C T C C T T G A A G G C T A A
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R
A
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G
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A
S D E L F F E A A E I G R E I V W L H T F G E R F A D A G A S R P A R P P R L A D A P R I P A D G A I P Q G S M P D E I L Y D A G S R R L H V G D G Y V E N V D R R V W E Y E V S G K Q V L R Q W F S Y R R A N R E R P I I G D R R P P S K L G E V Q P E S W P A E Y T S E L L N A L N V L G R L V E L E E A Q A G L L E R I C S S E M I T A D E L G E V G A L A A L E S D V R T A G Q A K L L E G * |
Maingene=or1880; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, extend to start of alignment | |
| or1902 - or1904, or1904 | 1996505 | 1996792 | pseudogene |
T
T
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A
C
G
C
T
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A
G
A
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C
C
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A
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A
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T C C G G G G G C C C G C A A C G G C A T C G G C C T C T A T C C G G C C T A C G C G G A G A A G C T T T T C G A A G T A T C T C A G C G G C T T C A T G C G G C C G A G G A G T T C G A G G G G A C G G G C A T C G G G C T C G C C T C C G T G A G G C G G A T C T T A A A G C G G C A C G G A G G C A G G A C C T G G G C G A A T G C C G C G C C C G G A G C G G G A G C G A C T T T C T A C T T C T C C C G G C C G C G C G C G A C G G A G A C C G G A A A C G G C C C C C T C T C A A G C A G C C T G C G G G A G G A A A G A G A G C G A T G A
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A E K L F E V S Q R L H A A E E F E G T G I G L A S V R R I L K R H G G R T W A N A A P G A G A T F Y F S R P R A T E T G N G P L S S S L R E E R E R * |
Maingene=or1904; Extension FAILED; Comments=Pseudogene, failed extension, extended gene length<=100aa and < 70% the length of the second shortest homolog | |
| or1917, or1917 - or1918 | 2006904 | 2007611 | putative pseudogene |
A
T
A
G
G
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C
T
C
G
T
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G
G
G
C
G
A
A
C G G C G G A G G G A A G T C C A C G C T C G T G A G G C T C C T G A A C G G G C T G C T C G T C C C C A C G A G C G G C T C C G T G C G G G T C T T C G G G T T C G A C C C G G C G A C A G A G C C C T A C C G G G T G C G C G A G C G G G T C G G G A T G C T C T T T C A G A A C C C G G A C A A C G G G C T T G T T G C G C C C T T C G T C G A G G A C G A C G T G G C C T T C G G G C T C G A A A A C C T T G G C G T C G A G C G G G A G G C C A T G C G C G A G C G G G T C G C G G G A G C G G T C C G G G C C G T G G G T C T C G C C G G C T A C G A G C G G C G C G A G A C G G C G A C G C T C T C G G G C G G C G A G A A G C A G C G C G T C G C G C T C G C C G G G A T T C T T G C G G T C G A G C C G G A C C T C C T C G T C C T T G A C G A A C C G A C C T C G A T G C T C G A C C C G G C C G G G A G G C G C G A G G T C C T C T C C C G G C T C G C C G C G C T G C G G G G G G A G C G G A C C G T C G T C C A C G T T A C G C A C C A C C T C G A A G A G C T C T C G G A C G C C G A C C G G G T T C T T G T C C T C G T G G G G G G C G A G A T C G T C G C G G A C C T C T C C C C G G C C G G G C T C T T C G C C G A C G C G G A G C T T C T G G G A C G G G C G A A C C T C T C G C C G C C G G T C C T C G T G C G G C T T G C G G C C G C G C T C G G G C T C C C G A C G G A C G T G A G G A C C G C C A G G G A G C T T G C A C G G G A G G T C G C G C G G G A G T G T G G G C G G T G A
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L L V P T S G S V R V F G F D P A T E P Y R V R E R V G M L F Q N P D N G L V A P F V E D D V A F G L E N L G V E R E A M R E R V A G A V R A V G L A G Y E R R E T A T L S G G E K Q R V A L A G I L A V E P D L L V L D E P T S M L D P A G R R E V L S R L A A L R G E R T V V H V T H H L E E L S D A D R V L V L V G G E I V A D L S P A G L F A D A E L L G R A N L S P P V L V R L A A A L G L P T D V R T A R E L A R E V A R E C G R * |
Maingene=or1917; Extension SUCCEEDED with start of type NONCANSTART; Comments=For manual analysis, pseudo or non-canonical start codon, extended gene length > 80% the length of the second shortest homolog | |
| or2024 - or2026, or2026 | 2100092 | 2100589 | putative pseudogene |
T
T
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A
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C
C
C
C
G
A
A
G
A
C
G
A
G
G
C
C T T G G G A C G C A G C C G G G G C G G T T T C T C G A C G A A G C T G C A C G T G G C T T G C G A C G G C A A G G G G C G T C C G C T C T C G G T G G T C G T G A C C C C C G G C C A G C G C A A C G G C A G C A C G C A A C T C G G G T G G C T C T T G G A A G G G G T G C G G G T G C C G C G T C C G G A G G G C T C G C C G G G C A G G C C G C G C A A G C G C C C C G A A C A C C T C A T C G G C G A C C G G G G C T A C A G T T T C G A G G G T T G C C G C C G G T T G C T G C G C A G G C G G G G C A T C T C C C A C A C C A T C C C C G A G C G C A A G G A C C A G A A G G A G C G G C G C G C C G G G C G T C C G G G G C G C C G A C C G G G T T T C G A C C G A G A G A C C T A C C G G C G G C G C A A C G T G G T G G A G A G G T G C A T G A A C A G G C T C A A G C A G T G G C G G G C G A T A G C A A C G A G G T A C G A G A A G C G G G C G G C C A A C T A C C G G G C G A T G G T G A T C A T A G C C T C G C T G A T G A T G T G G C T G C C T T C A T G A
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V A C D G K G R P L S V V V T P G Q R N G S T Q L G W L L E G V R V P R P E G S P G R P R K R P E H L I G D R G Y S F E G C R R L L R R R G I S H T I P E R K D Q K E R R A G R P G R R P G F D R E T Y R R R N V V E R C M N R L K Q W R A I A T R Y E K R A A N Y R A M V I I A S L M M W L P S * |
Maingene=or2026; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene length>100aa and between 70% length of second shortest homolog and 90% the length of the second longest homolog | |
| or2041, or2041 - or2042 | 2113996 | 2114754 | pseudogene |
C
A
G
T
C
C
C
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G
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G G C C A T C G G A A T G A C A G A G A T A A A C C T G G A C G C G T A C G C G G A G G T T C T C G G G A G C C G G C G T T T C T T C G A C T C T C T G G C C C T G A C C G T C T A C G T T G C A G G A G C C T C G A C C G T T A T C G C C A C C A C C T T G G C C G T C C T C G C G G C G T T G G C G C T C A G A C G C G C C C C T G G C G G C A T A G G C T C C C T G A T C T T C C A G G T G C C C A T A A C G G T T C C G C A C C T G A T G G C G G C C G T G G G G A T A G C G T T C G T C G T G G G A C A G A C C G G C C T C G G G G C G C G C C T G G C G G C G G G T C T G G G C C T C G T C G G G G A A C C C G A A G C G T T C C C G G C G C T G C T C T A C G A C A G G T A C T C C A T A G G G G T C A T C C T C A C C T A C G T G T G G A A G G A A G T G C C G T T C A T C G C G C T G G T C G T G C T G G C C G G T C T T A G G G G C G T C G C G T C G G A G C T C G A A G A C G T T G C C A G G A C G C T C G G G G C C A A C G C C T G G C A G C G G T T C T G G T T C G T G G T C T T C C C G G T G A T A G C G C C G G G G A T C G T G G C C G C G A G C C T C G T C G T C T T C G C C T T C A C C T T C G G G G C C T T C G A G G T C C C G T A C C T G C T C G G G C A G G A C T A C C C G A C C G T T C T G C C G G T C G C C G C C T A C G A G G A G T A C C A G A G C G T G G A C C T C G C C G A C C G G C C C G T C G C C A T G G C G A T A A A C G T C C T C A T G G C C T T G G T G A C G G C G C T C T T C G C C G C C G G C T A C C T G C G G C T G A G C C G G G G A T G G G G C C G T G G A T A A
Q
S
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M
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A
E V L G S R R F F D S L A L T V Y V A G A S T V I A T T L A V L A A L A L R R A P G G I G S L I F Q V P I T V P H L M A A V G I A F V V G Q T G L G A R L A A G L G L V G E P E A F P A L L Y D R Y S I G V I L T Y V W K E V P F I A L V V L A G L R G V A S E L E D V A R T L G A N A W Q R F W F V V F P V I A P G I V A A S L V V F A F T F G A F E V P Y L L G Q D Y P T V L P V A A Y E E Y Q S V D L A D R P V A M A I N V L M A L V T A L F A A G Y L R L S R G W G R G * |
Maingene=or2041; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, extend to start of alignment | |
| or2052 - or2053 | 2127099 | 2127706 | join (2127099..2127395, 2127395..2127706) | pseudogene, missed gene |
g
t
g
a
a
c
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c
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c
c
g
c
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c
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a g c a t c g c a c c g c a g c c g g a a t a a g t a c c a a t g g c c t a t c t c a t t a t c g t c t c g c c c t a t g a c c a t a a a g g a a c t t c g c g c g g t a c a c g g t g c c g t g c c a c a t g t a g a g t t g a g c t t g g a t a g g g t c g t t t g c g t g a t c g t t g t t c a g c a a c g t c c a c g g c g t c c g t a t c a c a t a t c c a t a g a g c g g g g g t a t g t a t c c t t t g t t g g g t a t c a c a g t c a g t c t g a a c g g c g t t g c g t g c a t c a a c t g a c g g a c a g c t a c g c g t g c a a g a t g g a c c a c c t g c g t a c c t c c g t c a t g g a c c g c t g c a a c c t c c g c t g c c a g t g c t g c a t g c c c g a g g a c a t c a a g t c c c a g g a c a a g a g c c a c a t c c t c a c c c t g g a g g a g a t t c t c c t c t t c g c c g a g g c g t g c c t g c a a c t c g g c g t g a c g c a g g t g c g c g t a a c c g g c g g c g a g c c c c t c g t g c t a c g g g g c g t c g c t c g t a a a g a t a c g c c g g g c g g g a a g g t g g g c g g t t c a c g t t c g g a g a g c g g t t g c t c a c c a c c t t t a g g t g c a g g t t c g t g c a a t a g t a g t g g c t c g a a a a g t c c g t c g c c t c t c a g c t a g
V
N
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C
R
I
L
A
S
H
R
S
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I
S L S S R P M T I K E L R A V H G A V P H V E L S L D R V V C V I V V Q Q R P R R P Y H I S I E R G Y V S F V G Y H S Q S E R R C V H Q L T D S Y A C K M D H L R T S V M D R C N L R C Q C C M P E D I K S Q D K S H I L T L E E I L L F A E A C L Q L G V T Q V R V T G G E P L V L R G V A R K D T P G G K V G G S R S E S G C S P P L G A G S C N S S G S K S P S P L S * |
Comments=Pseudogene, gene with one frameshift, less than 80% of the length of the second shortest homolog |
| or2061, or2061 - or2062 | 2136810 | 2137046 | pseudogene |
A
T
G
A
G
C
C
T
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