Pseudogenes for contig
| Features | Start | End | Frame Joins | Pseudo Tag | Seq | GenePRIMP Notes |
|---|---|---|---|---|---|---|
| Desmer_00000970 - Desmer_00000990 | 97413 | 97723 | join (97413..97466, 97466..97723) | pseudogene, missed gene |
g
a
g
t
t
t
c
a
g
g
g
t
c
g
a
t
c
c
t
a
t g a t a g g c t g a t t a g c c a t a c a a c c a t c g t a a t g g c a c t a t a t a t t c t t c t t g c t t g g c a a c a t g g a c a a a a t a c c g a t g a a c g t t c g t t a g g t g a g c t a t t c t c a t t a t t g t g t g a t g a g g t c a g c g a a t t a g a t t g g c t t a c a a c a a c t a t t g g a a t t c t t a c t g a t c t t t c t g a a a a a g c t g g a a a g a a a t t a t c c a a a t t a a t t a a t c g t c a a c t c c a a c a a t g g a t t a t g g c t c t a g c t g c t a t a t c a g a g t c g g c c t c a t g g a t t g g a g c c a c a a g a t a t g a g t g a
E
F
Q
G
R
S
Y
D
R
L
I
S
H
T
T
I
V
M
A
L
Y I L L A W Q H G Q N T D E R S L G E L F S L L C D E V S E L D W L T T T I G I L T D L S E K A G K K L S K L I N R Q L Q Q W I M A L A A I S E S A S W I G A T R Y E * |
Comments=Pseudogene, start/stop is absent |
| Desmer_00001360 - Desmer_00001370, Desmer_00001370 | 119276 | 119812 | putative pseudogene |
A
T
T
T
T
T
A
G
G
A
G
G
T
G
G
T
C
T
C
T
T A T T A G C A A G G A C T T A A G A A T T A A T G A C G A A A T C C G G G T A A G G G A T G T T C G T C T C G T C G G T G A A G A G G G A G A G C A A C T C G G G A T T A T G A C G T C C A G A G A T G C C C T G A G C C T G G C G A T C G A G A A A T C G T T A G A T C T C G T A G A G A T T G C A C C G A C G G C T A A G C C C C C G G T A T G C A A A T T A A T G G A C T A C G G C A A G T A T A A G T A T G A A C A G G C T A A A C G A G A T A A A G A A G C T C G T A A G A A G C A A A A G A G C A T G G A A A T T A A A G A A G T C A A A C T G C G T C C G A A T A T T G A G G A C C A T G A C T T T G A G A C C A A A G C C C G T A A C G C C C A A C G T T T T C T T C A A G A C G G G G A T A A A G T A A A A G T G A C C A T A A T G T T C C G C G G A C G T G A A G T C A C T C A T C C T G A G C T T G G T A G A G C C C T A T G T A T A A G A C T G G C C G A G T T T T G C A A A G C C G A G T C T A C C G T A G A A C G C G A A C C A A A A C T T G A A G G T C G A A A T A T G A T C A T G A T T C T A G C T T C T A T T A A A C A C G A T T A A
I
F
R
R
W
S
L
I
S
K
D
L
R
I
N
D
E
I
R
V
R D V R L V G E E G E Q L G I M T S R D A L S L A I E K S L D L V E I A P T A K P P V C K L M D Y G K Y K Y E Q A K R D K E A R K K Q K S M E I K E V K L R P N I E D H D F E T K A R N A Q R F L Q D G D K V K V T I M F R G R E V T H P E L G R A L C I R L A E F C K A E S T V E R E P K L E G R N M I M I L A S I K H D * |
Maingene=Desmer_00001370; Extension SUCCEEDED with start of type NONCANSTART; Comments=For manual analysis, pseudo or non-canonical start codon, extended gene >80% median/second shortest homolog | |
| Desmer_00001610 - Desmer_00001620, Desmer_00001620 | 154922 | 155368 | pseudogene |
G
T
G
A
A
A
G
A
A
A
T
A
C
T
G
G
G
G
T
T
A G T T T T A G C G G T T A T A G T G T T A A T T T C G G G T T G C G G A T C C A A T A C T A A T T C G G T A A A G A A A A C A G A T T T A T C G A A C T T G A C C C C C A C C C C C A C C C A A A T A G T C G A A A C T T A T T A C A A T A G T A T T G C T A C T G G T G A T T A T T C G A C G G C T A A A A A T T G C T T G T C T G A T G A A A T T G T T C A G C A G T A T G T A A A C T A C C C C G A T T C A G A C T T C A C A A A T A T C A A G A A G T T A A C C G A C A T A A A A G T C A G T G T T G C A G C T C C A A T C A A A C T T C A C G G G A A G A A T T T T G A T G A G G T C C A G G T T A C A G C C A A A T A T G T T G C A G A G T A T A A A A A G G T A A T G A C G T C T G A C A A C G G A A A A C A G G T T A G G T T T A T T T A T G T A G C T A A A A A G G A A A A A G A T T C T C C A T G G A A G A T C A T T A G T A T T G G A A C A G G G C C A T A A
V
K
E
I
L
G
L
V
L
A
V
I
V
L
I
S
G
C
G
S
N T N S V K K T D L S N L T P T P T Q I V E T Y Y N S I A T G D Y S T A K N C L S D E I V Q Q Y V N Y P D S D F T N I K K L T D I K V S V A A P I K L H G K N F D E V Q V T A K Y V A E Y K K V M T S D N G K Q V R F I Y V A K K E K D S P W K I I S I G T G P * |
Maingene=Desmer_00001620; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and <50% median/second shortest homolog | |
| Desmer_00001800, Desmer_00001810 | 171638 | 172372 | pseudogene |
A
T
G
A
A
G
A
A
T
T
A
T
A
T
T
T
A
T
T
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A T T G G C T T C G T C A T G C T G C C C C A A A A T C G G A A A C G T T T C C G A T T T T G G G G C A G T C C A T T T A A A T A T G G T T T G T C A C A C C T A T G G A A C C C A A C A G G C C G C C T C C C T T G C C G T C G G C G G G C A G G G G G A A G G G T T G C C G A A T T T G A G T T A T T C C C A G G C C C T T A C T C T C T T A G T A G T C C C G G A A G A A G A C C G G G C T C A G T T C A T C G C A G A A T T G G A T G T G G A A A G C A T G T C T A T T C G C G A A C T G C A A A A G G C A G T T A A G G A G C G G A A C C A G G C A C T T C A G G A A C G G G A T C A G G C C A T T T T G G A A A G A G G G G A T A T C C A G A A A G C C T T A A A T A A T C A A G T G A G C A A A A T A T C C C A G C T G A C C A C T G A G C G G G A C A A C C T G A A G A G T A A G C C A G A G G A G T T A A G T A A G T C C A A A G G G G A G A T T G A G A C C A G G G C C G G G A A A T T G C A G T C G G A G T T G A A C T C C A T C A A G A A A A G C A C A G A A T A C A C T T C C A T C C A A T A A A T G A G T A A G A A C C T T A C T G C T G C T T A T C A C A A G T C C T G C G C T A A T A A A G T C G C C T T T T T A T A T G A G A G C C T G A A T A A A A C C T T T A A G G A A C T G A T C T T T G A G C T G A G C A G G T A T G C A C C C G G G G A T A A G G A C G C T C A T G A A G C T T A T A A A A C T A A G A C T G T C G A T T T T T T G A C G A A A G G T T T G A A A C A A A T G T A T G A A A C A G A T A T A G G A C A C T T A A T G T A G
M
K
N
Y
I
Y
L
L
A
S
S
C
C
P
K
I
G
N
V
S
D F G A V H L N M V C H T Y G T Q Q A A S L A V G G Q G E G L P N L S Y S Q A L T L L V V P E E D R A Q F I A E L D V E S M S I R E L Q K A V K E R N Q A L Q E R D Q A I L E R G D I Q K A L N N Q V S K I S Q L T T E R D N L K S K P E E L S K S K G E I E T R A G K L Q S E L N S I K K S T E Y T S I Q * M S K N L T A A Y H K S C A N K V A F L Y E S L N K T F K E L I F E L S R Y A P G D K D A H E A Y K T K T V D F L T K G L K Q M Y E T D I G H L M * |
Comments=Pseudogene, TAA stop codon seen in alignment | |
| Desmer_00001850 - Desmer_00001860 | 176781 | 176977 | complement (join (176781..176882, 176882..176977)) | pseudogene, missed gene |
C
C
T
C
T
A
A
G
A
T
A
C
A
G
T
A
T
A
T
C
C T G T G C A G C A G A T C A T T G G A A T C A C A G A G T T G A T G A G G A T T A C T A C T A T C A G C A G G G T C T T C C G T T T A A G C T G A G G G A G A A A A A C C A G C A G G A G A T C C T G T T G G A C A A T G C C G C A C T T G C T A T G G G C G A T G C G C C C C A T C C C G G C A C C C T A G A A A C T C C G C T C A G T G A A A C A G A A T A A
P
L
R
Y
S
I
S
C
A
A
D
H
W
N
H
R
V
D
E
D
Y Y Y Q Q G L P F K L R E K N Q Q E I L L D N A A L A M G D A P H P G T L E T P L S E T E * |
Comments=Pseudogene, start/stop is absent |
| Desmer_00001990 - Desmer_00002010 | 195276 | 195590 | putative pseudogene, missed gene |
A
T
A
G
G
A
A
T
T
A
G
G
T
T
A
G
A
T
C
G
T G A A A A A G C T A C T G T G C A G A G G A T G A T T G A G C T G T A T T G C A A A A G T C A T C A C C A C A C T A A G G G C G A A T T G T G C C T G G G C T G T C A G G A T T T A T C A G A C T A T G C C A T G A A T C G C C T C G A T C A T T G C A A A T T T G G A G A A A G T A A G C C A A C C T G C T C T A A A T G C C C G G T A C A T T G T T A T A A A C C T C T T A T G C G T G A C A A A A T T A A A G A A A T A A T G C G A T A T T C A G G G C C A A G A A T G A T G T A T A C T C A T C C A A T T G C G G C T A T T A G G C A T T T A A T T G A C G G A C G T A C A A A G A A T A G A T A A
I
G
I
R
L
D
R
E
K
A
T
V
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R
M
I
E
L
Y
C
K S H H H T K G E L C L G C Q D L S D Y A M N R L D H C K F G E S K P T C S K C P V H C Y K P L M R D K I K E I M R Y S G P R M M Y T H P I A A I R H L I D G R T K N R * |
Comments=For manual analysis, pseudo or non-canonical start codon, extended gene >80% median/second shortest homolog | |
| Desmer_00002140 - Desmer_00002150 | 211100 | 211258 | putative pseudogene, missed gene |
A
T
G
T
G
G
C
A
A
T
G
C
C
A
A
G
T
T
T
C
G A G T T G T G G A T A T A T C T A T A A T C C G G A A A A A G G A T G C A A A A A A T C A A A A A T A C C T A A G G A C G T C C C T T T T G A G G A G T T G C C T G A T G A A T G G A G A T G C C C G T T G T G T G G G G C A G G C A A A A A A A T G T T T A A A C C T C T A T A A
M
W
Q
C
Q
V
S
S
C
G
Y
I
Y
N
P
E
K
G
C
K
K S K I P K D V P F E E L P D E W R C P L C G A G K K M F K P L * |
Comments=For manual analysis, pseudo, good start found, extended gene <=100aa, >70% median/second shortest homolog, <80% median/second longest homolog. Found common hit with non-adjoining gene: Desmer_00014030 | |
| Desmer_00003040 - Desmer_00003060, Desmer_00003060 | 287609 | 288523 | pseudogene |
G
T
G
T
C
T
A
A
G
G
T
T
G
C
A
C
T
G
A
A
A A A G A A T G G G G T T T T A C G A T T G A T A T C A G C C A A A T T T T A T A G T G T G G A A G A T T G G G A A T A C T T T G T C A A T A T G A G G A G A G A G T T A A T T A A G T T A A A G G A T G A T C G T C T T A A C T T A C A A G C A G T A T T A G A A A G G A A A A C T A A A G A A C T A A A A A T T G A G T T T A A A A A A C G T G C A G A A A T C G A G C A G A A A T T G G T A G T A C T T G A A C A G G A A G T T G C T A A G C T G G A A A G G T T T A A C G T A A T A G G A C A A T T A G C T G C A G G A C T T G G A C A C G A G G T A C G T A A C C C A T T G A C G A C A A T A A G G G G T T T C C T A C A A A T G C T T C A G A A T A A A G A G G A T T T G C A T A C A T A T A A G A G C T A T T T T G A C C T A A T G A T A G A A G A G C T T G A T A G G G C T A A C C T A A T A A T C A G C G A T T T T T T G T C C C T T G C T A A G A A T A A G C C A T C A G A G T T T A C A C G C C A A T G T T T A A A T A A A C T T T T A G A A A A T C T C T A T C C A T T G T T G C A A G C G G A C G C T T A C A G C C A A G G A A A G A A G T G T G T T T T T G A A C C C G G A G A T A T T G C T G A A C T T G A C A T T G A T C C C A A T G A A A T C A C T C A G C T T G T T T T A A A C T T A G C C C G T A A C G G T C T C G A T G C G A T G C G T G A A G A T G G A T G T C T A A C A A T T A A T A C A T T T A T G G A C G G G C G A T A T A T A G T T C T T A G T G T T A G G G A T G A A G G A A A A G G C A T T G A T A C A A A G A A T T T A C T T A A A C T A G G C A C C C C G T T T T T C A C T A C A A A G G A A A A C G G A A C A G G G T T A G G T C T A C C A A T G T G C T A T A G C A T T G C A G A T A A A C A T A A T G C G C T T A T A G A T G T A A A G A C T G G C C C T G A T G G G A C T A C C T T T T C A G T T C G A T T T C C A C A T C C G G A T T T A A T G A C A A T G G A G A T A G G C C A A T A A
V
S
K
V
A
L
K
K
N
G
V
L
R
L
I
S
A
K
F
Y
S V E D W E Y F V N M R R E L I K L K D D R L N L Q A V L E R K T K E L K I E F K K R A E I E Q K L V V L E Q E V A K L E R F N V I G Q L A A G L G H E V R N P L T T I R G F L Q M L Q N K E D L H T Y K S Y F D L M I E E L D R A N L I I S D F L S L A K N K P S E F T R Q C L N K L L E N L Y P L L Q A D A Y S Q G K K C V F E P G D I A E L D I D P N E I T Q L V L N L A R N G L D A M R E D G C L T I N T F M D G R Y I V L S V R D E G K G I D T K N L L K L G T P F F T T K E N G T G L G L P M C Y S I A D K H N A L I D V K T G P D G T T F S V R F P H P D L M T M E I G Q * |
Maingene=Desmer_00003060; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and <50% median/second shortest homolog | |
| Desmer_00003140, Desmer_00003150 | 295019 | 295579 | putative pseudogene |
A
T
G
A
T
T
T
G
T
C
C
A
G
A
A
C
A
A
C
T
A G C A C C G G A T T T T G A A A C A G A G G C A T A T G T A A G A G G A A A A A A A G T G A C C A T T C A T C T A A A T G A T T T T A T T G G T C A A T G G A T T C T C C T C A T C T T C T A T G C C A G T G A T T T T A C T T T T G T T T G A C C G A C T G A A T T A G C A G C C G T G G C T G C T C A G A A G G A G A C A C T T C A A A A A C T T G G T G T T C A A G T G T T A G C A A T T A G C A C A G A C A G C G T C T A T T C T C A T A A G A T T T T C G C A G A A A C A T C C C C C T C T G C A C G T A C G G T T T G G T A T C C T T T A T T A A C A G A T C G A T C T C A T T T C A T T T C A A A T C A G T A C G G A G T C C T C A G A A A A G A A T T A G G A A T A C C C T A C A G A G C G A C C T T T A T C A T A T C T C C T A G T G G G A A A G T C A A G T A T T C T T G T C T C T A T C C A C C T G A A G T A G G A C G C A A C A T T G A A G A G G T C A T T C G C A T T A T T C A G G G G C T G A T T T A T G A A G A G A T G A C T G G C C A A G G A G T T C C A G C C T A C T G G A A A C C T G G A A T G A C C G G A A T C T T A A A G G A T T T T A A A T A C G T T G G G A A A A T C T A A
M
I
C
P
E
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L
A
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D
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E
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E
A
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K V T I H L N D F I G Q W I L L I F Y A S D F T F V * P T E L A A V A A Q K E T L Q K L G V Q V L A I S T D S V Y S H K I F A E T S P S A R T V W Y P L L T D R S H F I S N Q Y G V L R K E L G I P Y R A T F I I S P S G K V K Y S C L Y P P E V G R N I E E V I R I I Q G L I Y E E M T G Q G V P A Y W K P G M T G I L K D F K Y V G K I * |
Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to median/second shortest homolog in length | |
| Desmer_00003440 | 325676 | 326209 | putative pseudogene |
A
T
G
G
C
G
T
T
A
T
T
A
A
A
T
T
G
G
C
A
C G A A G A T T T T A T T G T T A A C T T G G T A A G C C T T G T C A G G C C G A A G A T A T A C G T A G A A T T A G G G A T A T A T C A C T G T G C A C T T T T T A A T C G A C T G G T T C C T T T T G C A G A A C A A C T A A T T G G T G T T G A T A T A A G T A C T G A A G C C G G C A A G T A T A T G C A A C A G T C T T C T A A A A C C C G C T T T T T T A A C G G T A C T A C C C A A G A G T T T G C C G A A G A A G T A A G A G G T A A C A C A T T T C A G A T T G A T A T G C T A T T T A T A G A C G C A G A T C A T T C A A A A G A G G C A G T G T T A C A A G A C T T C A A A G A T T T T T T C C C T T T C G T A G C C C C A C A C G G T T T A G T T T T A T T G C A T G A T A C T C A T C C A G G G A A T G A G C A G A T G A T A C A G C C T G A A T G G T G C G G G A C T G C C T A T C T T G C C A T A G A C G A G T T G T T G A G A G A A G C T G G A T C A T C A T A T G A G T T A A T G A C C A T T C C A A T T T C A C C T G G G T T A A C A A T T T G T A G A A A G C G T C A G G T T C A A T T A G C G T G G C A G G A A A A A T A G
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A
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L
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K I Y V E L G I Y H C A L F N R L V P F A E Q L I G V D I S T E A G K Y M Q Q S S K T R F F N G T T Q E F A E E V R G N T F Q I D M L F I D A D H S K E A V L Q D F K D F F P F V A P H G L V L L H D T H P G N E Q M I Q P E W C G T A Y L A I D E L L R E A G S S Y E L M T I P I S P G L T I C R K R Q V Q L A W Q E K * |
Maingene=Desmer_00003440; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene >100aa and between 70% median/second shortest homolog and 90% median/second longest homolog | |
| Desmer_00003550 - Desmer_00003560, Desmer_00003560 | 339269 | 340009 | pseudogene |
A
T
G
T
C
A
C
G
G
T
T
G
G
A
A
G
C
C
G
A
T G T A G A A A T A G A C A T T A A T A C A A A A G A T G A G G T A G G A A C C T T A G C A A C C G C C A T T G C G A A A A T G A C A G A T A A C C T G A A C G A A G T C A T G A C T T A T A T C A G T T C A G C T T C G G A A C A A G T T G C T G T A G G C T C C A A A C A A C T A T C C G A T T C T A G T A T T G C A C T C T C C C A A G G G G C C A C T G A G C A A G C C A G T T C A A T A G A A G A G T T G A A C C T A G C C G C A A G A T C A G C A A A T G C T G C A A A A G A A A C C A C C G C A A T G A T A G A G G G A T C T A T T A A C A A G A C C G A G G G T G G T A C A A A G A T T G C C A A T G A G A C A G C A G A A G C C C T C A A T C A G A T T G T T A C T A G T A T T G C G A G C G T T G C T G A G T T A G T C A G A A A T A T C G C A G T G G C C T C T A A T G A A C A G G C A T C C G G T A T C A C A C A A A T A A A T C A A G G A A T T A T G C A A G T G T C A A C T G T A G T G C A A A C T A A C T C T G C C A C A T C A G A G G A A A G T G C A G C A G C T A G T G A A G A G C T T G C T A G T C A A G C A G A A C T G C T A A A A C A A C A G C T T T C G A G G T T T A A A T T A A G A A A A T C T C A A T G T T C A A G A G A A A C C T G T A G A G G A A T G G A G G A T T T A A A T C C T G A T G T T C T C C A G A T G C T T G A A C G T T T A A G C A A T A A A C A G C C A G T C C A C A T G A A T T T G C A A A A A G A G G C A G C G G C A A C T A A A T C A C A A A A G A T A G C T T T A A G T G A T A A C G A G T T T G G T A A A T A C T A A
M
S
R
L
E
A
D
V
E
I
D
I
N
T
K
D
E
V
G
T
L A T A I A K M T D N L N E V M T Y I S S A S E Q V A V G S K Q L S D S S I A L S Q G A T E Q A S S I E E L N L A A R S A N A A K E T T A M I E G S I N K T E G G T K I A N E T A E A L N Q I V T S I A S V A E L V R N I A V A S N E Q A S G I T Q I N Q G I M Q V S T V V Q T N S A T S E E S A A A S E E L A S Q A E L L K Q Q L S R F K L R K S Q C S R E T C R G M E D L N P D V L Q M L E R L S N K Q P V H M N L Q K E A A A T K S Q K I A L S D N E F G K Y * |
Maingene=Desmer_00003560; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and <50% median/second shortest homolog | |
| Desmer_00003650 - Desmer_00003670 | 352754 | 353088 | join (352754..352804, 352804..353088) | pseudogene, missed gene |
a
t
a
a
a
a
c
a
t
c
c
g
g
c
t
g
a
t
c
c
t g a t g g c g g g a c t a g g a a t t t a g g a a t c c c a a c t g c t t t a g a c c g t c t a c t t c a g c a g g c a c t t a c c c a a g t a t t a a c c c c a a t a t t t g a c c c a g a c a t t t c c c c a t a t a g c t a t g g g t t t a g a c c g g g a a a a a g a g g a c a t g a t t c g g c a c g a c a a g c a c g c g a a t a c a t c c a a c a g g g a t a t a a a g t a g t a g t a g a c a c c g a c t t g g a g a a g t t t t t a g a t c g t g t a a a c c a c g a c a t a t t a a t a g c c a g a g t a g c t c g a a a a g a g a a g a a c a a a c g t a t t c t a a a a c t t a c t c g t t c c t a t g t t g a a a c a g g t
I
K
H
P
A
D
P
D
G
G
T
R
N
L
G
I
P
T
A
L
D R L L Q Q A L T Q V L T P I F D P D I S P Y S Y G F R P G K R G H D S A R Q A R E Y I Q Q G Y K V V V D T D L E K F L D R V N H D I L I A R V A R K E K N K R I L K L T R S Y V E T G |
Comments=Pseudogene, start/stop is absent |
| Desmer_00003650 - Desmer_00003670, Desmer_00003670 | 353341 | 353671 | join (353341..353403, 353402..353671) | putative pseudogene |
a
t
g
g
c
t
a
a
a
t
a
t
a
c
a
g
a
t
g
a
t g a t a t a a g a a a a c t c c c g a a a a t t a c t t g c c a a a t t a c a g a a a a t t a t c t g g g a a t a t c c c c t a t g g c t g t g a g c a t c g g a a t g a g a a a t g a t c t a t t g c c a a t c g g a t a t g c t a t t a a a a a t g a a g a c g g t t a c t c c g a c a g c t g g a g t t a c c a t a t t a t c g a t g a g c g g c t g a t t g c c t a t a a g c a t g g g a a g a t a a c c a a t g t t c a g g t t c a a a a c a t t g a a a a g a a c c t c a a c a c g a t c a t t t c g c a g t t t g a a g a a a t g a a a a a a t a c c t g c t t t t t a t a t t a a g c g a a a g c g c a a a a c a g a g a t a a
M
A
K
Y
T
D
D
D
I
R
K
L
P
K
I
T
C
Q
I
T
E N Y L G I S P M A V S I G M R N D L L P I G Y A I K N E D G Y S D S W S Y H I I D E R L I A Y K H G K I T N V Q V Q N I E K N L N T I I S Q F E E M K K Y L L F I L S E S A K Q R * |
Maingene=Desmer_00003670; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Desmer_00003680 - Desmer_00003690, Desmer_00003690 | 355597 | 356164 | join (355597..355665, 355667..355753, 355753..355887, 355886..356164) | pseudogene |
c
a
g
a
a
g
a
t
c
t
t
t
a
a
c
g
c
c
g
a
t c t t t t a a c c a a g a a g a g g g t c a a a a a c a a g g g a g a a c t g c c g c a g t a t t a t t a t g a g g a c a c c c a t a c a g c g a t t a t t g a t a a g g a t a c c t g g c a g t g t g t g c a g c t t g a a t t t g a g c g a c a g g a g c a g t a t a a g g a a g g c t c t t c t a t g a g c a a g t a c c a t t a t a a t c a g a g c g a a a g g t a t g g t t t t g t t g g a a a a a t a a t c t g t a a g c a t t g t a g t c g t a c a t a t g t c a t g c g a g a g t c a g c a c g t a c c c a g g a c t t g g g t g g c a a t a t a t t g g c c t g c t c a g g a t t t a g a t c a g g a c g a t a t a a a c c g c t g g g a c c g g a t g a c t g c c a a t g c g a g g t c a a g a t c g a t g g g g a t t t a c c g g a a c g g g c c t t t g t t a a c g c t t g g a a c g a g t t g a t a g a a a g c c g g a t a a c c t a t g a a g a a g a a t g g a a a c a a t g c a t g g a t g g a a g c g a t t t a t t g c t t a g a t a t t g g g c a a a a g a a c t a a g a c g t t t g g t t g a g g a c a g a g g t c t g a t t g a a g g g t t c t c g t a t g a a c t g a t g c t t a a a a c g t a g
Q
K
I
F
N
A
D
L
L
T
K
K
R
V
K
N
K
G
E
L
P Q Y Y Y E D T H T A I I D K D T W Q C V Q L E F E R Q E Q Y K E G S S M S K Y H Y N Q S E R Y G F V G K I I C K H C S R T Y V M R E S A R T Q D L G G N I L A C S G F R S G R Y K P L G P D D C Q C E V K I D G D L P E R A F V N A W N E L I E S R I T Y E E E W K Q C M D G S D L L L R Y W A K E L R R L V E D R G L I E G F S Y E L M L K T * |
Maingene=Desmer_00003690; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, frameshift/stopcodon as well as no start codon |
| Desmer_00003830 - Desmer_00003850 | 380741 | 380911 | pseudogene, missed gene |
A
T
G
G
A
A
T
C
T
G
G
A
T
C
T
T
T
T
T
C
C A G G G C C G G T G C C G G A G G T G A G A T C A C C G G A G T C G C T T C C A T C A T T C T T A A T G G T A A T A T C A A T C A G C C A G T C G A G A C G G T T C T T C A G A C C T C G C A C T T G T T T C A G A C T T A C A G A T C C C G G T T G T G C A A A A T T G A G A T C A A T C T G C A G T A A
M
E
S
G
S
F
S
R
A
G
A
G
G
E
I
T
G
V
A
S
I I L N G N I N Q P V E T V L Q T S H L F Q T Y R S R L C K I E I N L Q * |
Comments=Pseudogene, good start found, extended gene <=100aa and <70% median/second shortest homolog | |
| Desmer_00003890 - Desmer_00003900 | 389691 | 390047 | pseudogene, missed gene |
A
T
G
T
T
A
T
A
A
C
A
C
A
A
C
T
C
T
C
T
G T C T G A A C A G G T T T A A A A T C A A C T T T C T G C A A T T T T T T C C T C T C T C A A A T T A A G T C A A C T T C T T C G A A C A A C A G G A A T C C G C A A A T C C T A T G G C G T C T C A A G C T T C G C T G T C T T C C A A A T C A T A T T T C A G T T A G T T T T C C A G G G C C G T A A C T T G T A C C G A T T A C T A G A A G G C A C C C G A G C A A A A T C T C T C C C G G G T A A A G A A G T C G T T T A T C G G T T T T C T A T C A A T T A C T T A G T C A A G G T C G T C A G G C A A T T T G A A A A A C G C A C T T A C T T T G G C A C A C C A G C G T A T C C G T T T A T C G T C G A T G A T T C T G T C A T A G G A C G G G A A A G G A G T A A G G G T T G A
M
L
*
H
N
S
L
S
E
Q
V
*
N
Q
L
S
A
I
F
S
S L K L S Q L L R T T G I R K S Y G V S S F A V F Q I I F Q L V F Q G R N L Y R L L E G T R A K S L P G K E V V Y R F S I N Y L V K V V R Q F E K R T Y F G T P A Y P F I V D D S V I G R E R S K G * |
Comments=Pseudogene, >1 in frame stop codons | |
| Desmer_00004370 - Desmer_00004380, Desmer_00004380 | 452045 | 452917 | pseudogene |
A
T
G
C
A
A
C
T
A
C
T
T
C
A
A
G
T
T
C
C
T G G A T T G G A G G A A A G T G A T C C G A A G G A A T C G G A A A A A T T C A G T A T A T C T A T G T T T G A C A G G T A T T C A C A A T A C C T T A T T G A T C T T A C G T T T C G G C A A A G G A G G G A A A A G A A G A T A A A T C A A G T A A A T A T T A T T G G G T A T A C C C C T C T A A G T C T G G G C G A A G A A T C C C A T T T T T T C G A A A T C A T T G A C G A A C T G G G T A A A C T A G G T T T G G A A A T C A A T T G C T C G C C C T T A G A G A A A A T T G G C T T G G A G A C C T A T A G A A A A A T G T C C T C A G C A G C C T T A A A C C T T G T C G T A T C C C A T G A G G G G C T A G G T C T T G C T C G G T A T A T G G A A A T A G A A T A T T C G A T A C C T T A T A G T T T G A A T G T A C C G G T A G G T T T A T G G G G T A T G C G G C A G T T G T T T A A A G T T T T G G G T G A G A T C C C A G G C C T T C C G C A A A G C T T A A C A A G T C A G G A A A G A T A T G C C C C C A C C A G G A A G C C A C A G T C T G G A C A A A G C G C C G T C G T G A T A G G T G A A C C C C T C T T T G C T T C T T G C A T G G C T G C T T G T C T G C T T A A T G A C T T T G G G C T T A A C T A T G T T A A A A C A G C C A G C C T G A T A A A A A T G G A T A G G C G A A T G G A G A A A G T T T A T C A G G A A A A G T C G C T T T C C C A T G T C C A C T T G T T T G A A G A C A A G G A A G C C C T T G C C C G G T G G A T C G A A A T A A T A C G G C C G G A T A T C A T T G T T G G T G A C C C G C T T T A T C A G A G A C T C C T G G G C C C A G G C T C T G C C C A A T A T G T G T C T A T T C C A C A A G T A G G C T T G A G C G G A T C T A T C T A T A C T G G G A T G G A T T A C G A G T A T A T C G G A A A A A G A G G C T A T G A C T A T T T A G C T T C T T T T A T C G C A G G A T A A
M
Q
L
L
Q
V
P
G
L
E
E
S
D
P
K
E
S
E
K
F
S I S M F D R Y S Q Y L I D L T F R Q R R E K K I N Q V N I I G Y T P L S L G E E S H F F E I I D E L G K L G L E I N C S P L E K I G L E T Y R K M S S A A L N L V V S H E G L G L A R Y M E I E Y S I P Y S L N V P V G L W G M R Q L F K V L G E I P G L P Q S L T S Q E R Y A P T R K P Q S G Q S A V V I G E P L F A S C M A A C L L N D F G L N Y V K T A S L I K M D R R M E K V Y Q E K S L S H V H L F E D K E A L A R W I E I I R P D I I V G D P L Y Q R L L G P G S A Q Y V S I P Q V G L S G S I Y T G M D Y E Y I G K R G Y D Y L A S F I A G * |
Maingene=Desmer_00004380; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and >50% and <70% median/second shortest homolog, Blast redone with 250 hits and e-05, extended gene <70% median/second shortest homolog | |
| Desmer_00004520, Desmer_00004520 - Desmer_00004530 | 470313 | 470735 | putative pseudogene |
A
T
T
C
A
C
A
T
T
T
T
C
G
A
A
G
A
G
A
A
T T T A G G A T T T A T T A T C G G C A A A A C T A A C T C A A A A A T G A A G A A T A A C C T T G C T A G A G C A T T A A A A C C C T A T A A T G T T A C A C A C G A G C A A T G G C C A T T A C T G A A A T G G T T G T G G G T A G A G G A T G G C A T T T C T C A A A G G G A A T T A G C T G A G C G A A G T T A T A A G G A T C A A C C T A C G A T C A C T A G A A T T C T C G A T A A A C T G G A G C A A C G C G G G T T G A T T C G T C G T C A A G C T G A T T C C G G G G A C A G A C G G G T T T C T C T A A T T T A C C T G A C A A A G G A A G G C C A A G A A A T C G A G G C C T C T C T C A A A C C T C T G G C T C G T A A G G C C T T G G A A C A C G C C T T A C G T G G A C T A T C A G A A G A A G A A A G G T C T C A A C T T A C C A A T T T A A T G A A C A G A A T T A G T G C T A A T A T C G A T T A G
I
H
I
F
E
E
N
L
G
F
I
I
G
K
T
N
S
K
M
K
N N L A R A L K P Y N V T H E Q W P L L K W L W V E D G I S Q R E L A E R S Y K D Q P T I T R I L D K L E Q R G L I R R Q A D S G D R R V S L I Y L T K E G Q E I E A S L K P L A R K A L E H A L R G L S E E E R S Q L T N L M N R I S A N I D * |
Maingene=Desmer_00004520; Extension SUCCEEDED with start of type NONCANSTART; Comments=For manual analysis, pseudo or non-canonical start codon, extended gene >80% median/second shortest homolog | |
| Desmer_00004840 - Desmer_00004850, Desmer_00004850 | 499372 | 499530 | pseudogene |
A
T
G
A
T
T
G
A
G
C
A
A
A
T
T
A
T
T
A
A
A A G A G A T G G C A G A C A C G G T T A C A T C A G C A G G G A T C A T T T T A A T T G T C C T G A A T G T G G G G C T A A A G C T G A A G T T T G G T C G A T A G T G A C A G G A T A T C T T A G C G G C A A A A A A C T A C A A T T T G G G C A A G A A G G A A G A A T A T A A
M
I
E
Q
I
I
K
R
D
G
R
H
G
Y
I
S
R
D
H
F
N C P E C G A K A E V W S I V T G Y L S G K K L Q F G Q E G R I * |
Maingene=Desmer_00004850; Extension FAILED; Comments=Pseudogene, failed extension, extended gene <=100aa and <70% median/second shortest homolog | |
| Desmer_00004950, Desmer_00004950 - Desmer_00004960 | 509614 | 510398 | join (509614..510201, 510201..510398) | pseudogene |
a
t
g
t
t
c
a
a
a
a
g
a
a
g
c
c
a
t
t
c
c a a a g g t c t c g c g t t t a t c g t t g t t a t c g g c a c a t t a c t t a t a t c c c t t t t a g c t g c t c a g c c g a a t c t g g g g a t a g c c a a g t c a g c c a a g g a g g a g g t c t a t c a a g g a a a a a c c c c a a a a t a t g t t t t t a t g t t t a t c g g a g a t g g c a t g a g c t a t g c c c a a g t c a g c a g c g c g g a a a t g t a t c t g g g g g a a a a a t c t c t g c c c g g a a a g c t t t c t c c t g a g c a a t t g a g c t t t a c t a a g t a t c c t g t t c a c g g g g c c c t t a t g a c t c a g g a t t c t t c t t c c t t t a t t c c c g a t t c t g c t t c a a c g g c t a c t t c t c t c g c t t c a g g t c a g a a a a c t t t g t c c g g c g t c a t a a a t a t g g a t g a g a g t a a a a c c a a g a c t t a c a c a c c c a t c a c g g a a g a t t t a a a g g c t a a a g g c t a t a a g a t t g g g a t t g t a a c c a g t g t t c c c a t c a c c c a c g c t a c t c c c g c g g c t t a c t a t g c t a a g g t c a g c a a t c g a a a t g a t g c c t a t g a a a t t g g c a a a c a a c t g g c a g c c a g t g g c t t t g a t t a t t t t g g c g g c g g c g a t t t t g a t c a a a a a a a a g g t c c t a a g g g c a c c g a t c a a t c t a t c t a t g a a a t a g t c g a g a a a g c c g g c t a t a c c a t a g c c a a t a c t a a c g a a g a a a t c t t g g c t t t a a a t a a c c g t t c a g g c a a a g t t g t g g c t a t t g a t c c a g a t g a t t a t g g c t t a g t c t c c a t t g a g g g c t c t t t g t t g a c c c t t g a c c a a a t a t t g g g t a t g t g a
M
F
K
R
S
H
S
K
G
L
A
F
I
V
V
I
G
T
L
L
I S L L A A Q P N L G I A K S A K E E V Y Q G K T P K Y V F M F I G D G M S Y A Q V S S A E M Y L G E K S L P G K L S P E Q L S F T K Y P V H G A L M T Q D S S S F I P D S A S T A T S L A S G Q K T L S G V I N M D E S K T K T Y T P I T E D L K A K G Y K I G I V T S V P I T H A T P A A Y Y A K V S N R N D A Y E I G K Q L A A S G F D Y F G G G D F D Q K K G P K G T D Q S I Y E I V E K A G Y T I A N T N E E I L A L N N R S G K V V A I D P D D Y G L V S I E G S L L T L D Q I L G M * |
Maingene=Desmer_00004950; Extension SUCCEEDED with start of type START; Comments=Pseudogene, gene with one frameshift, <80% median/second shortest homolog |
| Desmer_00004990 - Desmer_00005010 | 516280 | 516511 | join (516280..516384, 516386..516511) | pseudogene, missed gene |
t
t
a
g
c
t
t
g
c
t
g
c
c
g
g
a
a
c
a
g
a c c g t t g c c c a t g a a g a c a a t a g c c t t t a a a g g a a a a g t a c t g c t t c t g g t c a a c a c t g c c a g c a a g t g c g g t t t t a c t c t c c a g t a t g a g g g c t t g g a g a g g g t c a a a c c g g c t t g g c t g g c a g t t t g a t t g t t a t t g g g g t t g c g c c a g a g t g g a a a g c c a g a g g a c g g a g g c c t t g a a g a c t t a c c c a a t g g t a c t a t a c a a a c c t a g
L
A
C
C
R
N
R
P
L
P
M
K
T
I
A
F
K
G
K
V
L L L V N T A S K C G F T L Q Y E G L E R V K P A W L A V * L L L G L R Q S G K P E D G G L E D L P N G T I Q T * |
Comments=Pseudogene, start/stop is absent |
| Desmer_00005090 - Desmer_00005100, Desmer_00005100, De | 526494 | 527511 | join (526494..527249, 527248..527511) | pseudogene |
t
t
t
a
c
a
a
a
t
g
a
a
a
a
c
a
g
a
a
t
t a t t t a t g g t g t c a c a a c c g g a t t g g g a g a a a a t t g g a a t a a a g c a g t a t g t c c t g c a g a t t c a g c g c t t t t a c a a a g a a a c a c g c t c c t g t c c c a t g c c g c c t c g g t a g g a g a a c c t t t g g a c a a a g a a g t a g t g c g g g g a a t a c t t t t g a t g a t g c t t t t a a a c c t g g g a c a a g c t t a t g c c g g a g t t c g g a t g g a a a c t c t g g a g c a a a t a g c a g g a c t t c t c a a t c a t g g c a t t a t c c c a t t t g c t c c a a a a g a t g g t t c c g t a g g c t a t c t g g g g c c g g a a g c t c a c g t t g g c c t c g t t c t a a t t g g g c t a g g t a a g g c t t g g t t t a a c g a t a a t t t a c t g c c c g g a g a t a a g g c t c t t g c a a a g g c g g a t a t g a a a c c a a t c g t t t t a g c a a g c a a a g a g g g c t t a t c c c t c g t t t c c g g a a c g a c a t c a a t t a c a g c a c t a a c t g c t t t a a c g t t a t a t g a t g c a a t t a a t t a t t c c a a a a c a g c a g a c a t c t c t g c a g c c a t g t c t t t a g a a g t a t t a a a a g g a a c c c t g g a a g c t t a t g a c c c a a g g a t t c a a g c t g t a a g a c c a c a t g a a g a c c a a a t a a a t a c t g c t g a a a a c a t t a g a a a t a t c t t a a a a g a t a g t g a g a t a a t t g c c c a a t a c a a a t c c t a c a g a g t a c a g g a t g c t a c g t c a t t a a g a a a t g t t c c t c a a g t a c a c g g g g c a g t t a a g a a g a c a a t c a a a g a t g c c t a t a a c a c g g t t c t t a c g g a a a t g a a c t c c t g t t g c g a t a a t c c g t t a a t a t t t t c t g a c g a g g a t g a c g g a c a g g t a t t g a t g g g c t g t a a t g c t g a t g g c t c a t t t g t g g g a a t t g a a g c t g a t t c t t t a t g c a t g g c a a t g a c c a t g a t g g c a a a a a t g t c a g a a a g a a g g a c c c a t a g a c t g g t t a a c c t a t t t a a c a t t t a t a a a t g g a t g t c c a a g t a t t g t g a t g a t g c a c c a a c t a t g g t t g g t t a t a g c t t g a t a c t a t a a
F
T
N
E
N
R
I
I
Y
G
V
T
T
G
L
G
E
N
W
N
K A V C P A D S A L L Q R N T L L S H A A S V G E P L D K E V V R G I L L M M L L N L G Q A Y A G V R M E T L E Q I A G L L N H G I I P F A P K D G S V G Y L G P E A H V G L V L I G L G K A W F N D N L L P G D K A L A K A D M K P I V L A S K E G L S L V S G T T S I T A L T A L T L Y D A I N Y S K T A D I S A A M S L E V L K G T L E A Y D P R I Q A V R P H E D Q I N T A E N I R N I L K D S E I I A Q Y K S Y R V Q D A T S L R N V P Q V H G A V K K T I K D A Y N T V L T E M N S C C D N P L I F S D E D D G Q V L M G C N A D G S F V G I E A D S L C M A M T M M A K M S E R R T H R L V N L F N I Y K W M S K Y C D D A P T M V G Y S L I L * |
Maingene=Desmer_00005110; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, frameshift/stopcodon as well as no start codon |
| Desmer_00005190 - Desmer_00005200 | 539510 | 539729 | join (539510..539629, 539631..539729) | pseudogene, missed gene |
a
t
c
c
c
a
t
g
c
t
g
g
c
a
a
c
c
c
t
g
g t t t a t t a t c g c a a a g c c a g g g a a t t g g g t g t c a g g t t c a t a t c c g g t g c c c g g g c t t a t t t t g g c c t g t a c t t t t a g t g g g c a t g g c t t t g g g a t c g c t c c t a c c g t c g g g a c t c t g c t g g c t c a g a t g g c t g t g g g a g a a g c g c c c g t t c t g g a t g t c a g t g a c t t t c g c t a t g a t c g a t t t a a a g c t a a a c t a t a a
I
P
C
W
Q
P
W
F
I
I
A
K
P
G
N
W
V
S
G
S
Y P V P G L I L A C T F S G H G F G I A P T V G T L L A Q M A V G E A P V L D V S D F R Y D R F K A K L * |
Comments=Pseudogene, abnormal start as well as frameshift |
| Desmer_00005340 - Desmer_00005350, Desmer_00005350 | 554219 | 554879 | join (554219..554494, 554494..554829, 554829..554879) | pseudogene |
t
t
g
a
t
a
c
g
a
a
a
c
a
a
a
t
t
g
a
c
t c c a t t c c a t c c g a t a a a a c g a t a t a c c c t t g c g a t t t c t a g t t t g c c a g t t g a g t t t c a g g g a t t c a c t a t t c t c c a t t t g a c t g a t t t a c a t a g c a a g g a a t a c g g a g a t g g t c a a a g g a a t t t a a t t g a g t t g a t t a a c c g a c a a c a a t t t g a t g c a g t t g c a a t t a c a g g t g a t t t a g t t g a t a a g a g t a a c c c t a a t a t g g a a c c a g c a a t a t c t t t a g t g a a a g g c t t g c a t t c t a a a c c t g t t t t t t t g g t t c c t g g a a a t c a t g a g t g g t g g a c a g a t t a c c a a a t c a a g t c t c c a t t g g a a g c c c a a g g g g t a c a t a t a c t g g a c a a c g g a c a t t t c a a a t a t a a c a t a g g c a a t t c t t a t a t c t g g a t a a t g g g t g t c g a c g a t c c c t g t c t a g g a a g a g a t c a a t t a g a t a t a g c a c t g g c a g g c g t c t c g g a t t c t g t a c c t a a g g t t t t a t t a g c a c a t g c t c c t a a c a t a t t t t c t a a g g c t a t c a a a g a c a a t a t t g a t t t a g t t t t a g t a g g a c a t a c g c a t g g t g g a c a a g t c a g a t t a c c a t t g g t t g g t g c a g t g a t a g c a c c g g g g c a a g g a a t t t t t c c t g a g t t t g a t t a c g g g c a a t t t a c t t c c g g t t c t a c g a a a a t g
L
I
R
N
K
L
T
P
F
H
P
I
K
R
Y
T
L
A
I
S
S L P V E F Q G F T I L H L T D L H S K E Y G D G Q R N L I E L I N R Q Q F D A V A I T G D L V D K S N P N M E P A I S L V K G L H S K P V F L V P G N H E W W T D Y Q I K S P L E A Q G V H I L D N G H F K Y N I G N S Y I W I M G V D D P C L G R D Q L D I A L A G V S D S V P K V L L A H A P N I F S K A I K D N I D L V L V G H T H G G Q V R L P L V G A V I A P G Q G I F P E F D Y G Q F T S G S T K M |
Maingene=Desmer_00005350; Extension SUCCEEDED with start of type START; Comments=Pseudogene, normal stop not found. Pseudogene, frameshift/stopcodon as well as no stop codon |
| Desmer_00005650 - Desmer_00005660 | 587017 | 587370 | pseudogene, missed gene |
A
T
A
C
T
T
T
T
C
A
T
T
T
C
T
T
C
T
T
C
T A C T T T T T G C T A C C A A T A T C G C T A T G G G T G T T T G C T C A A A T G T A T C A G C G G C A T T T T T C A A G G G C A A G G G G A T A T T C T T C T G G A T G G A A A A A A T C T A A A A A C C C T G A A A G C A C A G G A C A T A G C T A A T C A G A T C A G C T A C C T C T C C C A A G A A G G G T G C G G T A A G C C G G T G T T G A G T G T T T T T G A G G T G G T T C T A C T G G G G A A A G T T C A T T C T C T G T C C C T G A A G G T T A A G G A T G C C G A A G T G A A T T C T G T G C T G A A A A T C C T T A G G C A A T T A G G C A T A G A A G A C T T A G C T T C C A G A A A T A T T G G C G A G T T G G A A T G G A T A T A T C G C A A G C C C T A A
I
L
F
I
S
S
S
T
F
C
Y
Q
Y
R
Y
G
C
L
L
K
C I S G I F Q G Q G D I L L D G K N L K T L K A Q D I A N Q I S Y L S Q E G C G K P V L S V F E V V L L G K V H S L S L K V K D A E V N S V L K I L R Q L G I E D L A S R N I G E L E W I Y R K P * |
Comments=Pseudogene, non-canonical start found, extended gene <=80% median/second shortest homolog. Found common hit with non-adjoining gene: Desmer_00005980 | |
| Desmer_00005650 - Desmer_00005660, Desmer_00005660 | 587678 | 588124 | pseudogene |
A
T
G
C
C
T
T
T
A
G
T
A
T
T
C
T
A
C
A
T
G A C C C C T G C G G T T G T T T C C G C A G A C A C A T T T C T G A A G C T C A G A G A A T C G A G T C G C G G C T G G G T G A T C A T G G T A A A A C C C A C G C G A C G T T C G A A C T C G G T T C T G G A C G A A C T C A A T A A A C T A A A T G C T G A A C A A G A C A C A A A A G C C C T T G A T G A A A C G A T A G T T T A C G C A T T T G A T T T G G T G T G G C A C A G C G G A G G C T G C C C G A A G T T C G A A T A T G A G G A G C A G A T C T G G C A A G A A G A C C A A C C C C T G G A A G A G G C A A T C A A A G A A T A T A C C C T C C G C A T T T C T T C T A C C C A T G A G C T T T C G G A C A G T G A C A G G G A A A G A A T C A G A A A G T A T C T C G A A A G T A T T G C C G T C G A C G G G A T C G T C C A T G A G A T C A C C A A G A C C A C T A T T G T G G C T A T G T A T T G G C A G G T G A A C T G T A A A A A C C C T G A A T A A
M
P
L
V
F
Y
M
T
P
A
V
V
S
A
D
T
F
L
K
L
R E S S R G W V I M V K P T R R S N S V L D E L N K L N A E Q D T K A L D E T I V Y A F D L V W H S G G C P K F E Y E E Q I W Q E D Q P L E E A I K E Y T L R I S S T H E L S D S D R E R I R K Y L E S I A V D G I V H E I T K T T I V A M Y W Q V N C K N P E * |
Maingene=Desmer_00005660; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and >50% and <70% median/second shortest homolog, Blast redone with 250 hits and e-05, extended gene <70% median/second shortest homolog | |
| Desmer_00005700, Desmer_00005700 - Desmer_00005710 | 589067 | 589300 | pseudogene |
A
T
G
G
G
A
C
A
A
A
A
T
A
T
C
A
A
A
G
C
G A A T A A A A G T A T C G G C G A T A A C A T T C G T A A A T G G A G A G G C A C C A G G G G C C T G A C C C A A G C G G A G C T T T C G G C C A A A T T G C A G A T A C A T G G C T G C G A T A T T T C G C G G G G A A C A C T G G C G A A A A T T G A G G C T G G T A T C A G G C A T A T T T C T T C T A A T G A G T T A C A A G G G A T A A A G G C A G T A T T A G A G A T A A C T T A C G A C G A T T T T T T T A C G A G G T G A
M
G
Q
N
I
K
A
N
K
S
I
G
D
N
I
R
K
W
R
G
T R G L T Q A E L S A K L Q I H G C D I S R G T L A K I E A G I R H I S S N E L Q G I K A V L E I T Y D D F F T R * |
Maingene=Desmer_00005700; Extension FAILED; Comments=Pseudogene, failed extension, extended gene <=100aa and <70% median/second shortest homolog | |
| Desmer_00005700 - Desmer_00005710 | 589301 | 589510 | join (589301..589378, 589380..589427, 589430..589510) | pseudogene, missed gene |
a
a
c
g
a
a
t
a
c
t
a
t
t
t
t
c
a
a
t
t
t a c g c t g t c a c c t t a t g a c c g c a c t a t a g a g c a a a a c c t g c g t g a t a a g c t a a c t a a c a t t g a g g a t a c c t t t a t g g a g t t t t t c c a a c a a a t c g g t a a a g a a c g t c g t g t c t t g t g g c g t t a t g a c c c g a t t g t g c t c a a c g a t a g t t c g a c t a t t c t t g t a g t a g c g c a g a g t a a a a c g g a a t a g
N
E
Y
Y
F
Q
F
T
L
S
P
Y
D
R
T
I
E
Q
N
L
R D K L T N I E D T F M E F F Q Q I G K E R R V L W R Y D P I V L N D S S T I L V V A Q S K T E * |
Comments=Pseudogene, start/stop is absent |
| Desmer_00005700 - Desmer_00005710, Desmer_00005710 | 589512 | 589976 | pseudogene |
A
T
T
C
T
C
T
T
C
A
A
T
G
A
T
A
A
A
T
T
T G A G A A A C A A A G C C G G A A T G T C G A T T A T C T C A A A G A A C C T G A T G A A T T C T T T T C T G A T A G T C A T T T G T A T T T T A A A G A T G A T G G T A A T C C A G G G T T T G C G G A C T A T T C G G T C A T T G G A G A C G A A T A T C T T G A A G G C G G C T T T G C C C C G T A T G C A G T T G C T A T C C A T A T C G T G T A C T T T G C A A A A A A T G G A G A A C A G A G A G T A A G G C A C T T T G T T T C T G A T T C A A A T G A G G A T A T A G C C A A C C C C G C C A A A A A A T T C T A T G A A G C G G T T T C C A A A T T G G C G A C A T G G T A T A A G A C A A A A C C T A A G C C G G T T G A A T T G A C A T T G G G G C T A A A A A C A T T G T T G G A T C A C T A T G A T A A T C A A A C A T A T C C A G G A C C T G G A A G C G T G A A A A A G C T G T C C T T G A T G C A T C A C T T A G A G T T A A T G G G A A A A T A C T T G A G C G A G G T T G G T T A A
I
L
F
N
D
K
F
E
K
Q
S
R
N
V
D
Y
L
K
E
P
D E F F S D S H L Y F K D D G N P G F A D Y S V I G D E Y L E G G F A P Y A V A I H I V Y F A K N G E Q R V R H F V S D S N E D I A N P A K K F Y E A V S K L A T W Y K T K P K P V E L T L G L K T L L D H Y D N Q T Y P G P G S V K K L S L M H H L E L M G K Y L S E V G * |
Maingene=Desmer_00005710; Extension SUCCEEDED with start of type NONCANSTART; Comments=Pseudogene, non-canonical start found, extended gene <=80% median/second shortest homolog | |
| Desmer_00005720 - Desmer_00005740, Desmer_00005740, De | 590398 | 592170 | join (590398..590658, 590660..591388, 591391..592170) | pseudogene |
a
t
g
a
t
a
a
c
t
g
t
t
g
a
t
a
t
c
a
g
g a t t a t a a a g a a g a a a t g c a t t t t c g g c c t g t g g a a a t t a t t t t c t t t c a t t a a a a a g t a t t g g g g g c g g a t g g g c c t c g c t g t g g g g a g c g g g a t t c t c a a c c a a a t t g c a g c c a t a g c t g c t t c t g c c t t a g g a g c a t a t t t g a c a g g t a t g g c t g t c t t a g g t c g g g g t c a g g a c a a a a t a c t a g t c t t g c t g g c g g t a t t g g c c t c c c t a a t c c t t g c c a g a g c a g t g a t g t a t t a t t t a g a g a t g t g g t t t g c c c a t t a t g t g g c c t a t g g c g t a c t g g c g g a t t t c c g g g t t c t g c t t t a t a g a g c c t t g g a a a g a a t c g c c c c g g g a c a c c t g a t c a a c a g g c g c t c c g g a g a a g t g g c t t c a g c t t t g a t g g c t g a t g t g g a a a t t c t g g a a t g g t t t t a t g c c c a t a c c t t t g g g g c t t t c c t g g t g g c a g t g a t t g t a c c c c t c a t t g t t c t t t t g g c c a t g g g a t t t g t c c a t t g g g t c c t g c c c c t g a t c c t t a t a c c c t g g a t t c t g c t g g t c t g c a c g g c a c c t t t t t g g c t a a g a a a a a a a g c c g a c c a a c a g g g a a g c t t a g t c c g t a c t t a t t t g g c t g g a g t a a a t g c t g a a a t t g t a g a t g g a a t t c a g g g c c t g c g g g a a a t t c t t t c t t t t g g t t t t g a a g g g g a t t a t t t a a a g a a g c t g g a t c a g a g t a c t a a a g t c t t a a g c a a a a g t c a g c t t g a t t a t g g c a a g a g a c t g g g g a c t g a a g g a g a c a t a g t g g a t g c c t t t g t c t c c c t g g g a a t g c t c t g c a t g c t g g t g a c t t c c g c c a g c c t g a t c g g t t c g g a a a a a c t g g a a c c c g g g t g g t t t c c a g t g g t t g t t a t t a t g t c g a t t t a t g t c t t t g c t c c g g t g a c g g g a a t t g c a a a a a t g g c c c g c a a c t t t g g c t t g a t t a a a g c a g c c a g c g c c a g a g t a t t c a g t t t c c t g g a a a t g a a g c c c a t g g t a g t a g a c c a t a g t g a t t t t g t g c c t g a t a a g c t t g a a g c c t g g a t t a a t t t t a a g a a t g t g g a t t t t c a g t a t g g a g a a a a t c t t c c c c a a g t a t c g a a a a a g g t c t c c t t t a g g a t t a a t a a a g g a g a a a c c g t t g c a t t a g t c g g c c a t t c a g g t g t c g g g a a g t c c a c c t g t g c c a a c c t g t t g t t g a g a t t c t g g g a t g c t t c a g g g g g g g t g g t g g a a a t t g g c g g c t a t a a t a t t c g g g a t t t t a c g c a g c a a a c c c t c a g a g a g a t g a t c t c c t a t g t t c c c c a g g a t g t t t a t t t a t t t a a c a t g t c g g t g g c t g a a a a c a t c a a a c t c g g t a a a c c g g a t g c t t c a g a g g a g g a a a t a a a a a g a g c g g c t a a a g a a g c c t t g g c c c a t g a a t t t a t t g a a a a a c t t c c t g a g g g c t a c g a t a c t a a t c t c g g g g a g a g a g g t t c c c a a c t a t c g g g a g g a c a g a g a c a g a g a a t t g c c a t t g c c a g g g c g c t c t t g a a a a a t g c t c c c a t c t t a t t g a t g g a t g a a g c g g t t t c c a a t c t g g a t a c t c a a a a t g a a c g g g a a t t a c a g g a a a t a c t c t t g a a a t t g c g t a a g g a t a a a a c a a c c c t g a t a a t a t c c c a c c g t t t g t c g a c a a t t t t a t c a g c a g a c c g g a t t a t t g t t c t g g a t a a g g g t g a g g t g g c c g a a g t a g g a a g a c a c g a t g a a c t t g c c a a a a a a g g a g g a a c t t a t t a t a g g c t t c t c g g c t c t c a g a g a g a c g g a a t t g t g g c c t a g
M
I
T
V
D
I
R
I
I
K
K
K
C
I
F
G
L
W
K
L
F S F I K K Y W G R M G L A V G S G I L N Q I A A I A A S A L G A Y L T G M A V L G R G Q D K I L V L L A V L A S L I L A R A V M Y Y L E M W F A H Y V A Y G V L A D F R V L L Y R A L E R I A P G H L I N R R S G E V A S A L M A D V E I L E W F Y A H T F G A F L V A V I V P L I V L L A M G F V H W V L P L I L I P W I L L V C T A P F W L R K K A D Q Q G S L V R T Y L A G V N A E I V D G I Q G L R E I L S F G F E G D Y L K K L D Q S T K V L S K S Q L D Y G K R L G T E G D I V D A F V S L G M L C M L V T S A S L I G S E K L E P G W F P V V V I M S I Y V F A P V T G I A K M A R N F G L I K A A S A R V F S F L E M K P M V V D H S D F V P D K L E A W I N F K N V D F Q Y G E N L P Q V S K K V S F R I N K G E T V A L V G H S G V G K S T C A N L L L R F W D A S G G V V E I G G Y N I R D F T Q Q T L R E M I S Y V P Q D V Y L F N M S V A E N I K L G K P D A S E E E I K R A A K E A L A H E F I E K L P E G Y D T N L G E R G S Q L S G G Q R Q R I A I A R A L L K N A P I L L M D E A V S N L D T Q N E R E L Q E I L L K L R K D K T T L I I S H R L S T I L S A D R I I V L D K G E V A E V G R H D E L A K K G G T Y Y R L L G S Q R D G I V A * |
Maingene=Desmer_00005750; Extension SUCCEEDED with start of type START; Comments=Pseudogene, >1 frameshifts |
| Desmer_00006050 - Desmer_00006060 | 632045 | 632143 | pseudogene, missed gene |
A
G
A
C
C
A
G
A
T
G
T
A
T
A
T
A
C
A
G
A
G G A C G A T A A A G T T A A A G T A T C G A T T T T C C C T G A T C T A T T C A T C A A T C T A A A A C C T A T A T T C G A C A G A A T T G A T T T A T G A
R
P
D
V
Y
T
E
D
D
K
V
K
V
S
I
F
P
D
L
F
I N L K P I F D R I D L * |
Comments=Pseudogene, start/stop is absent. Found common hit with non-adjoining gene: Desmer_00005760 | |
| Desmer_00006770 - Desmer_00006780, Desmer_00006780 | 704882 | 705547 | pseudogene |
A
T
G
T
T
T
C
A
A
T
T
C
A
T
T
C
A
A
A
G
A C T A T T T C G T C C T C A A C A C T T C C A C G A T A T C A T T G A G T G T C T A G C A G C T G C T C T G G A A G C A A A A G A T T T G T A C A C T A G C G G T C A T T C T T C T A G G G T A G G G G A T A T G T C C T A T G A T T T A G G A C G C G C T A T G G G A C T A A A A G G G C A G G A A T T A G A A A A T C T T C A T A T T G C G G C A C A C C T T C A T G A C A T A G G C A A G A T G G G T A T A T C C G A A A A C A T A C T C A A T A A A A A G G G A A G A C T T C T T C C C C A T G A G T G G G C C C A G A T A C A A A A C C A T C C A G A A A T T G G C T A C A A A A T C T T G G C T A A A T C A A A G G G T C T T A A G C A A A T T G C T G A A A T T G T G C T G C A T C A T C A T G A G C G C T G G G A C G G G A A A G G T T A T C C T G A T G G C T T A T A T G A A A A C A G A A T T C C A C T A G G T T C A A G G A T A A T T G G A G T A G C T G A T G C T G T T G A T G C G A T A A C T T C G A T G A G G C C C T A T C G C A A G G C C T T G T C T T G G G A A G A A T G C T G G G A T G A G G T T G T C T T A A A T A A A G G T A T A C A A T T T G A T C C C G T T G C A G T A G A A G C C T C A G A A A G A C T A T G G A A A A A A T G G C G A G A A C G A T C C C T G G A G T C T G A G A G G A A T G A G G G C G A T T C T A A A T T G G C A G T T G C A G C A G T T C A T T C G A A A T G T T A G
M
F
Q
F
I
Q
R
L
F
R
P
Q
H
F
H
D
I
I
E
C
L A A A L E A K D L Y T S G H S S R V G D M S Y D L G R A M G L K G Q E L E N L H I A A H L H D I G K M G I S E N I L N K K G R L L P H E W A Q I Q N H P E I G Y K I L A K S K G L K Q I A E I V L H H H E R W D G K G Y P D G L Y E N R I P L G S R I I G V A D A V D A I T S M R P Y R K A L S W E E C W D E V V L N K G I Q F D P V A V E A S E R L W K K W R E R S L E S E R N E G D S K L A V A A V H S K C * |
Maingene=Desmer_00006780; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and <50% median/second shortest homolog | |
| Desmer_00006910 - Desmer_00006920 | 721646 | 721894 | pseudogene, missed gene |
G
A
C
A
G
C
G
C
A
G
A
C
C
A
A
T
C
T
A
C
T A T G C A A C T T C G G G A T T T A C A A G T C A A G T T A T T T G G C G G A G C T G A T T C G T T A A G G G C G G A T G A T T A C T T T A A G A T T G G C C A A A G A A A T A T C A A G G C A G T T C G A G A G A C T C T G T T A G G T A T G A A C T T A A A A A T T C T C G A T G A G C A A A T T G G G G G A T A C T T A A G T A G A A G T A T T A C A A T G A G T G T G T C T A C A G G T C A A A T A G A G A T T A A G A C A C T G C C A A T T A A T T G T T A A
D
S
A
D
Q
S
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M
Q
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L
Q
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L
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G
G
A D S L R A D D Y F K I G Q R N I K A V R E T L L G M N L K I L D E Q I G G Y L S R S I T M S V S T G Q I E I K T L P I N C * |
Comments=Pseudogene, start/stop is absent. Found common hit with non-adjoining gene: Desmer_00038600 | |
| Desmer_00007060, Desmer_00007060 - Desmer_00007070 | 738839 | 739945 | pseudogene |
T
T
G
G
A
G
T
G
G
C
T
T
A
C
A
T
T
A
A
C
A A T T G A T G G A C G T G A A G T C A G T G T A C C T A A A G G T A C G A C A G T A C T T G A T G C C T G T C G G A T G A A T A A T A T T C C T A T T C C A A C C T T G T G T C A T G C G C C G G A G C T A A C C T C T G C G G G A G C A T G C C G T C T G T G T G T G G T T C A A A T C G A A G G G A T G C G C A A T C T T C C C C C C T C C T G T G T T A C T C A A G C A G C A C A G G G T A T G A A G G T T G A G A C C C A A A A T C C T A A G G T T C G C C A A G C A C G A A A A A C T A T C C T G G A A C T C C T T G T T G C C A A T C A T C C G T T A G A T T G C A T G A C C T G T C A G A A G A T G G G A G A T T G T T C A T T G G C A G A A T A T G C C T A T G A C T A T G G G G T A A C C G G T G A G G T C T A T C A A G G C G A G A A G C G C T G T C T G C C A A T T G A T G A C A G T A A T C C T T T T A T T C T G C G C G A C C C G A A T A A A T G T A T C T T A T G C G G A A A A T G T A T T A A G G C T T G T A C A G A A A T T C A A G G A A A A A G C A T T C T A G A C T T T T C C T T T A G A G G T T T T G A T A C A C A A G T A G G T C C T G C T T T C A A T C T G C C T T A T A A A G A G T C C G A T T G T G A T T T T T G T G G A T C T T G C G T T T C A G T A T G T C C T G T T G G A G C A C T G A C T G A A A A G C A A A T G G T C G G C A A A G G A C G T C C T T G G G A A G T A T C C A A A G T C C A A A C G A C T T G T C C T T T C T G C G G A G T A G G T T G T A A C T T T G A T T T G A A T G T T A A A G A C G G A A A G G T C A T T G G A G T A A C T T C T A A T C C T G A G G C A C C G G T T A A T G G C A A A G C T T T G T G T G T T A A A G G C C G T T T T G G C A T G G A C A T G A T C T A T A G C G A C A A T C G T G T A A C C A C A C C T T T A A T T A G A A A A A A T G G A G A A C T G G T T C C G G C A G A T T G G G A T G A G G C T C T G G A T T T G G T C G C C T C T A A G T T G G G A G A G A T T A A A A A G A C C T A T G G T C C C A A C T C T A T A G C T G C T T T A A G C T C A G C T C A C T G C A C A A A T G A A G A A A A T T A C C T G A T G C A A A A G T T C A T G C G C G C G G T A A T C G G T A C G A A T A A T A T C G A T C A C T G C G C A A G G A C T T G A C A C G C T C C C A C T G T G G C C G G T C T G G C C A C C T C A T T T G G A T C C G G A G C G
L
E
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L
T
L
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D
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E
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T
V L D A C R M N N I P I P T L C H A P E L T S A G A C R L C V V Q I E G M R N L P P S C V T Q A A Q G M K V E T Q N P K V R Q A R K T I L E L L V A N H P L D C M T C Q K M G D C S L A E Y A Y D Y G V T G E V Y Q G E K R C L P I D D S N P F I L R D P N K C I L C G K C I K A C T E I Q G K S I L D F S F R G F D T Q V G P A F N L P Y K E S D C D F C G S C V S V C P V G A L T E K Q M V G K G R P W E V S K V Q T T C P F C G V G C N F D L N V K D G K V I G V T S N P E A P V N G K A L C V K G R F G M D M I Y S D N R V T T P L I R K N G E L V P A D W D E A L D L V A S K L G E I K K T Y G P N S I A A L S S A H C T N E E N Y L M Q K F M R A V I G T N N I D H C A R T * H A P T V A G L A T S F G S G A |
Maingene=Desmer_00007060; Extension SUCCEEDED with start of type START; Comments=Pseudogene, normal stop not found. Pseudogene, TGA/TAG stop codon, start with Good alignment found, extended gene <80% median/second shortest homolog with e-value<e-05 | |
| Desmer_00007060 - Desmer_00007070, Desmer_00007070 | 739910 | 741520 | putative pseudogene |
G
T
G
G
C
C
G
G
T
C
T
G
G
C
C
A
C
C
T
C
A T T T G G A T C C G G A G C G A T G A C T A A T T C C A T T A A T G A A A T T C C T A A C G T T A A G G C T A T G T T T G T T A T T G G T G C T A A C C C G A C A G A A G C T C A T C C G G T A A T C G G A A C T A A A A T G A A A C A A G C C C T G G C T A A A G G C G C T A A A C T G A T T G T T G C T G A C C C T C G G T G T A T C A A T C T T G C C G A A G A T G C A G A T G T T T G G T T G A G A C T G A G G C C A G G A A C G G A T A T T G C T T T G A T C A A C G G A A T C A T G A A C A T T A T T C T G G C T A A C G G G T G G G A A G A T A A A G A G T T T A T T G C T G A A C G A A C A G A A G G C T T T G A A A A C G T T A A A G A A G C A G T A A A G G A A T A T A C T C C T G A A G T A G T A A G T A A A G T A A C T G G G G T T T C C G T A G A A C A G C T C G A A G A A G C C G C C A G A A T C T A T G C T A C C G C T G A A C G A G C T T C A A T C T T C T A T A C C T T A G G G A T A A C T G A G C A T A C C T G T G G T A C G G A C A A T G T C A T G A G T C T G G C A A A C C T A G C T A T G C T G A C A G G A A A T A T T G G T A A G G A G A G T T C A G G G G T T A A C C C A A T G C G C G G C C A G A A T A A C G T A C A G G G T G C C T G T G A T A T G G G A G C A C T T C C C A A T G T T T A T C C C G G T T A C C A A C A G G T T G C C A G C C C A G A A G T A C G A G C C A A G T T C G A G G C A G C T T G G G G T G T T C C C C T T G A T C C G A A T C C C G G C T T T A T G A T T C C A G A T A T G T T T G G A G C T G C A G T T A G T A A A G A T C T G C G T G C T C T G T A T G T C T T A G G A G A A G A T C C G G T C A T T A C G G A T G C C G A T G C G A A C C A T G T A C G C A A A G G T C T T G A G G C C T T G G A C T T C C T T G T T G T T C A A G A A A T T T T C T T G T C T G A A A C A G C A A A A C T A G C G G A T G T C G T C T T A C C T G G T G C T A G T T A T G C A G A G A A G A C A G G C A C T T T C A C A A A T A C T G A G C G A A G A G T G C A A T T G G T A A A T C A G G C C A T T A A G C C T A T T G G A A A T G C T A A G A C A G A T G G G G A G A T C A T T T G T G A G C T G G C T A C T C G T A T G G G T T A C C C C T T C A A C T A T G A A T C T T C T G C A G A T G T C A T G C A G G A A A T T T C A A A G C T C G C A C C A C A A T T T G C T G G T A T A A C C C A T G A G C G C T T A G G A A C A C A A G G C C T G C A A T G G C C T G T A C C C C A T G C G G A G C A C C C A G G A A C C A A G T T C C T G C A T G A A G G G A A G T T T A A C C G G G G C A A A G G A C T C T T T A T G G C C G T A G A A A A T C A G T T G C C T G C T G A A T T G C C C G A T G A G G A A T A T C C T T T C T T G C T C A A T A C C G G A C G T A A A C T C T C T C A C T A T A A T G T T T T C A C C C A A C A C T C C C C T T C A T T A G G C A T C C A T T C T C C T G A A G A G C T T G C T G A G G T T A A T C C T T C A G A C G C T A A G A A A C T G G G A A T T G A A G A T G G A G A A G T A G T C C A A G T A G C A T C A C G C C G T G G T G A G C T G A A A A C T A A A G T T A A A G T A A C T G A G A G A G T C C C A G A A G G C A T G G T C T T C A T G A C A C T T C A C T A T T T T G A T T C A C C A A C C A A T G T C C T G A C C A A T G G T G C C T A T G A T A A A G T T A C C A A A A C C T A T G A G T A T A A A G T A T G T G G T G T A A A A A T T T C C A A G G T T A G C T A A
V
A
G
L
A
T
S
F
G
S
G
A
M
T
N
S
I
N
E
I
P N V K A M F V I G A N P T E A H P V I G T K M K Q A L A K G A K L I V A D P R C I N L A E D A D V W L R L R P G T D I A L I N G I M N I I L A N G W E D K E F I A E R T E G F E N V K E A V K E Y T P E V V S K V T G V S V E Q L E E A A R I Y A T A E R A S I F Y T L G I T E H T C G T D N V M S L A N L A M L T G N I G K E S S G V N P M R G Q N N V Q G A C D M G A L P N V Y P G Y Q Q V A S P E V R A K F E A A W G V P L D P N P G F M I P D M F G A A V S K D L R A L Y V L G E D P V I T D A D A N H V R K G L E A L D F L V V Q E I F L S E T A K L A D V V L P G A S Y A E K T G T F T N T E R R V Q L V N Q A I K P I G N A K T D G E I I C E L A T R M G Y P F N Y E S S A D V M Q E I S K L A P Q F A G I T H E R L G T Q G L Q W P V P H A E H P G T K F L H E G K F N R G K G L F M A V E N Q L P A E L P D E E Y P F L L N T G R K L S H Y N V F T Q H S P S L G I H S P E E L A E V N P S D A K K L G I E D G E V V Q V A S R R G E L K T K V K V T E R V P E G M V F M T L H Y F D S P T N V L T N G A Y D K V T K T Y E Y K V C G V K I S K V S * |
Maingene=Desmer_00007070; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo, good start found, extended gene >100aa and between 70% median/second shortest homolog and 90% median/second longest homolog | |
| Desmer_00007870 - Desmer_00007880 | 823036 | 823263 | putative pseudogene, missed gene |
A
T
G
A
A
A
A
A
T
G
T
C
A
C
T
A
T
G
T
T
T T C T A A C A A T A C C T G A C C C T A C T G T T C A G T A G C G A A G A A G T T T C T A T C G C A A A A C A A T A T C C C C T T T G A A G A G A A G A A T A T T A G T A A T G A C G A A G C A G C T T T A T T A G A G T T G C A G A A G C G G A A C A T C A A T A G T G T C C C T A C A T T C T T A G T A G G G G A A G A A G T T G T T G T G G G C T T C A A T A A G G A C A A G A T T C T C G C T C T T G T A C A T T A A
M
K
N
V
T
M
F
S
N
N
T
*
P
Y
C
S
V
A
K
K
F L S Q N N I P F E E K N I S N D E A A L L E L Q K R N I N S V P T F L V G E E V V V G F N K D K I L A L V H * |
Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to median/second shortest homolog in length. Found common hit with non-adjoining gene: Desmer_00007080 | |
| Desmer_00008120 - Desmer_00008140, Desmer_00008140 | 852312 | 852923 | pseudogene |
A
T
G
A
C
G
A
A
T
A
A
A
A
T
T
A
C
T
G
T
C T T C T C G G A C T T T T T A T G A C C C T T T T G T A T G A T A G G G A A G A T C C C C C T T G A C C A G T T G G C C A G G G A T A A A A A C T T G A T T G T A G A A T G G A A G G C T T T T G A A C T T A G A C C T G A A G G T G T T G A G C T G C C A G A G A A G T C A C C A G C T G A T A T T G C C A A T G C T A A G G C C A G A C T T G A G G C T T T G G G G C A A A A A T A T G G A A T T T A T A T G A C T T T T A A C G A A A A A A G C A A G C A T T C T A G A T T A G C C T T A G A A G G C T C T A A G T A T G C T G A A G A A C A T G G G C T C G G C A A T G A A T A T C A T G A T G A A G C T T T T A A A G C T C A G T T T C A A G A A A G C A A A G A T A T T A A T G A C T T A A G T G T A T T G T G T G A G A T T G C C G C T C A A A T T G G G C T A G A T C A G G A A G A A T T T C G T G A T T C C C T T G T T A C A A A A A C A T A C G A A C A A G C T G T A T T A A A G G A T T T A G C C G A A G C T A A G G G T T T G G G A A T T C A A A C T G T T C C C T G T T T T A T A A T T G A T A A T C G T G C T C T T C A T G G C G C T C A A A G T T A T A G T T C C C T G G A A A A G T T C C T T C A G G G A A C A A G A A G T G G T T T T C C G C T C G A T A T A A A C G T A A T T A A G T A A
M
T
N
K
I
T
V
F
S
D
F
L
*
P
F
C
M
I
G
K
I P L D Q L A R D K N L I V E W K A F E L R P E G V E L P E K S P A D I A N A K A R L E A L G Q K Y G I Y M T F N E K S K H S R L A L E G S K Y A E E H G L G N E Y H D E A F K A Q F Q E S K D I N D L S V L C E I A A Q I G L D Q E E F R D S L V T K T Y E Q A V L K D L A E A K G L G I Q T V P C F I I D N R A L H G A Q S Y S S L E K F L Q G T R S G F P L D I N V I K * |
Maingene=Desmer_00008140; Extension SUCCEEDED with start of type ALNSTART; Comments=Pseudogene, TGA/TAG stop codon, e-value of second shortest homolog > e-05, extending to start of BlastX alignment | |
| Desmer_00008510 - Desmer_00008520 | 893974 | 894228 | pseudogene, missed gene |
T
T
G
A
A
T
A
T
A
T
G
C
A
G
A
A
A
A
T
T
A T T A T G C C A G A T A C T T T T T G G C A A G T G T G C C T G T C A A A A T A A T A A A G A T A A C C C C A A T A T T A A G A A A T C A A T T T A T C T A T G G G G T T G T C C T C C C A A T T T A G G A A T G A G T G C T G A A G A G C C G G C T A A A G A G G A G A T G G A G T G C G A T T A T C A A G A A T A T G T C C A C T T T C G T A A C T A C T T G T T C G A T A G A T A T A A A A T C G A T G A A A G C T T T C G A C T A A G T G A T T G G A C A A T C G A A T A G
L
N
I
C
R
K
L
L
C
Q
I
L
F
G
K
C
A
C
Q
N
N K D N P N I K K S I Y L W G C P P N L G M S A E E P A K E E M E C D Y Q E Y V H F R N Y L F D R Y K I D E S F R L S D W T I E * |
Comments=Pseudogene, good start found, extended gene <=100aa and <70% median/second shortest homolog. Found common hit with non-adjoining gene: Desmer_00008660 | |
| Desmer_00008690 | 913309 | 913716 | pseudogene |
A
T
G
C
T
A
A
A
T
C
C
A
G
A
T
A
A
C
C
A
A G T A T C C G T T C A C A A C A G G G C A T T A G C T C T T C A T G G C G G A A T A A C C A G T A A T A A C T G T G T T T A T T T T C A A G C T G A A G C C T T G A G G A G A A T A G G C T T T A A T A T T A G C A A T T C T A T G G C T A A T A C C A T T C A A T T T A G T A A T T T G C T C T C A A A A C T A G G T T T T A A A A A A G A T A C G G A C A T T G G C A A T C T A A A G C C C G G T G A T A T T G T T T T C A C T C A A G G G T A T A G C C A C A C T T A T A C A T T T A T G G G T T G G G T T A A T C C C G G A A A T T A T G A T T A T G C T T A T A T C G T T G A T A A T C A A T C G A G A T C A T T C G G A G G T C A A G T T T A C C A C G T G C G A A G C A C T A C A G G T G A T C C A G C A C A A A A C A C T G A T G G C A T G G C G T T T T T C A T G T A T T A T T A A
M
L
N
P
D
N
Q
V
S
V
H
N
R
A
L
A
L
H
G
G
I T S N N C V Y F Q A E A L R R I G F N I S N S M A N T I Q F S N L L S K L G F K K D T D I G N L K P G D I V F T Q G Y S H T Y T F M G W V N P G N Y D Y A Y I V D N Q S R S F G G Q V Y H V R S T T G D P A Q N T D G M A F F M Y Y * |
Maingene=Desmer_00008690; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and <50% median/second shortest homolog | |
| Desmer_00008850 - Desmer_00008860, Desmer_00008860 | 937128 | 937433 | pseudogene |
A
T
G
A
T
T
C
T
A
G
A
A
A
C
G
C
A
G
A
T
T A C A A T A T A T G T C T G T T C T C T T T G T C A G A G A A C T T A C A A A C T G A A G G A A G A T G C T A A A A A A T G T G A A T A T C T C T G T T C T A A A C T A C T T G A G T C C C C T G A T A T A T C T G T A T T A G G C T T A A C C T C T A G G A C C T A C A A T C T T C T T A A A A T T G C T G G C A T A G A T A C A C T C G A T G A G T T A C G T G A G A C A A C A G A C A G T C A A T T A C T G A A T T T A A A A C G C T T T G G A C A A G G T G C A T T A A A T G A G T T G C A T C A A A A G C T G C A A C G T T A T G A G G C A A A A C T T A A G A A T C A T T G A
M
I
L
E
T
Q
I
T
I
Y
V
C
S
L
C
Q
R
T
Y
K
L K E D A K K C E Y L C S K L L E S P D I S V L G L T S R T Y N L L K I A G I D T L D E L R E T T D S Q L L N L K R F G Q G A L N E L H Q K L Q R Y E A K L K N H * |
Maingene=Desmer_00008860; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and <50% median/second shortest homolog | |
| Desmer_00009130 - Desmer_00009140 | 965277 | 965681 | complement (join (965277..965327, 965327..965419, 965421..965681)) | pseudogene, missed gene |
T
A
T
G
C
T
G
T
A
A
T
T
A
A
A
G
C
T
A
T
T A A C A T G T A G G C G G G A A T C A A A A T A G A T G A A T C C A T C A C G G A A C G T A C G C C C C T G A T C A T C G C A A A T G A G A T T A A T A G A A T C A A A C A A G A T A C T T C T A A A A T C A T G C T T A C C A G T G C C A T C G A G A T C A G C A G G C G C C T G A A G G A A G C T A A G G C C C C G C T C C C C T A T G G A G T A T G A G G A A A A T A G C C G G T G G A A T C G G C T A G C T A T T C C C A G C G C A C A G C C A A C A A G C T G A T G C A G C T A T T T A A G G A A T A T G G A G A T A A A C T A T T C G C T G C C G G C A A T G A A G G C T A C A G G T C A A A T T C G C C G G C G C T G G C G A A T T T G A C C T A C T A C C A G G C T C T C C T C C T G T A G G A A A T T C C G G A A G G T T A G G G G G A G A A A T T G A T C A T C T A T T A A
Y
A
V
I
K
A
I
N
M
*
A
G
I
K
I
D
E
S
I
T
E R T P L I I A N E I N R I K Q D T S K I M L T S A I E I S R R L K E A K A P L P Y G V * G K * P V E S A S Y S Q R T A N K L M Q L F K E Y G D K L F A A G N E G Y R S N S P A L A N L T Y Y Q A L L L * E I P E G * G E K L I I Y * |
Comments=Pseudogene, start/stop is absent. Found common hit with non-adjoining gene: Desmer_00001800 |
| Desmer_00010560 - Desmer_00010570, Desmer_00010570 | 1103548 | 1103979 | pseudogene |
G
T
G
G
G
G
A
C
T
G
C
T
G
G
A
A
T
A
A
C
C C T G T A T A C T A T C G G T T C T A T T A A A G A A A T T C C C G G A G T T C G A A A A T A T G T T G C A G T A G A C G G A G G G A T G A C A G A T A A T C C A A G G C C T T C T C T C T A C C A A G C G C G C T A T G A G G C T A T T T T G G C T A A T C G T C C C C A A G A A G C T G T G T C A G A G T C T G T T T C A G T T G C G G G A A A G T G C T G T G A A T C A G G G G A T A T G C T T A T T T G G G A T A T T G A T T T A C C T A A A A T A A C T G C C G G T G A C T T A T T G G C A G T A T C C G C C A C A G G T G C C T A T A A T T A T T C C A T G T C T T C A A A T T A C A A T C G G C T T C C A C G A C C G G C G G T A A T C C T T G T T A A G G A T G G G C A G G C G G A T A T A A T A G T A A G G C A A G A A A C C T A C T C T G A T T T A T T A A G A A A T G A T G T T T T A C C T G A T C A C T T G A A G A G A T A A
V
G
T
A
G
I
T
L
Y
T
I
G
S
I
K
E
I
P
G
V
R K Y V A V D G G M T D N P R P S L Y Q A R Y E A I L A N R P Q E A V S E S V S V A G K C C E S G D M L I W D I D L P K I T A G D L L A V S A T G A Y N Y S M S S N Y N R L P R P A V I L V K D G Q A D I I V R Q E T Y S D L L R N D V L P D H L K R * |
Maingene=Desmer_00010570; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and <50% median/second shortest homolog | |
| Desmer_00011080, Desmer_00011080 - Desmer_00011090 | 1153256 | 1153498 | putative pseudogene |
A
T
G
G
A
G
T
C
A
T
C
A
G
A
G
A
T
A
A
C
C C T A C A A G T T T A T C A T C A T C A T C T T A A A A T T C C C A T T G A A A C C T A T T T C A A T A C A G T C A C A G A T T T T C T G G A T C C T T G G G A T G A G C G G G C C T A T C A A T T T G T A G T T C A T A A A T A C T T G G A A G A A G C T A A G G A C A A C G G T A T C G T A G G A A T G G T T C G T C A A G A A A G A G A T G A A A A C T A C G T C T A C C T A G A T G C C G C C G T C C G G T A T C C G C A G A C C A T G G A T T A A
M
E
S
S
E
I
T
L
Q
V
Y
H
H
H
L
K
I
P
I
E
T Y F N T V T D F L D P W D E R A Y Q F V V H K Y L E E A K D N G I V G M V R Q E R D E N Y V Y L D A A V R Y P Q T M D * |
Maingene=Desmer_00011080; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene <=100aa, >70% median/second shortest homolog, <80% median/second longest homolog | |
| Desmer_00011260, Desmer_00011260 - Desmer_00011280 | 1171886 | 1172395 | putative pseudogene |
A
T
G
T
T
T
A
T
G
G
T
T
C
T
A
G
C
T
T
A
T T T A A C A G C T A A T G T T T T A G C A A A T T T A T C G G T T G C T T A T T T T G G C C C T G T C T C T A C C C C C A T A A A T G C C T T T T T A T T A A T C G C C T T T G A T C T C G T T T C T A G G G A C G C A T T G C A C G A G C G G T G G A A T C A T A A G A A T C T T T G G T T A A A G A T G G C A C T T T T G A T A T C T A C T G G T G C A G T A A T C T C T T T T T T A T T A A A T C A A G G A G C C G G C C G A A T T G C T A T T G C A T C T T T G A T T G C T T T C C T A T T A A C A G G C T T T A C C G A T A C A G T A G T T T A T C A A C T A T T A A A G A A T C A C T C A C G T T T C T T A A A A G T C A A T G G T T C T A A T A T T A T A T C A T C T G C T G T A G A T T C A A T T G C C T T T C C G A C T A T T G C C T T T G G C A G T T T C A T A C C T T G G A T A G T A T T A G G C C A A T T T G T A G C A A A G G T A T T C G G C G G G T A T T T A T G G T C T C T A G T C C T A T T C A A A G G G G A G A A A G G A T C T A G A A T C A A A T C T A T C T T G A A T T A A
M
F
M
V
L
A
Y
L
T
A
N
V
L
A
N
L
S
V
A
Y
F G P V S T P I N A F L L I A F D L V S R D A L H E R W N H K N L W L K M A L L I S T G A V I S F L L N Q G A G R I A I A S L I A F L L T G F T D T V V Y Q L L K N H S R F L K V N G S N I I S S A V D S I A F P T I A F G S F I P W I V L G Q F V A K V F G G Y L W S L V L F K G E K G S R I K S I L N * |
Maingene=Desmer_00011260; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene >100aa and between 70% median/second shortest homolog and 90% median/second longest homolog | |
| Desmer_00011260 - Desmer_00011280 | 1172436 | 1172621 | pseudogene, missed gene |
T
T
G
G
A
A
G
A
T
A
A
A
T
C
T
T
G
G
A
A
A A A A T A T G A G C G C A A A A T A T C T A G A G A G A T A G G G A T T G A C G T A A T A A T A T T C A G G G G T A A C A A T C G A A A C C C T A G A G G A T T T C A T A A C A C T T A T G T A T T T T T T A T A A A C A G A A G G A A G A A T T A T T T C T T T C A G A A A G A T A A A A T A G T C G T A T T A C A A C T G C A A T A A
L
E
D
K
S
W
K
K
Y
E
R
K
I
S
R
E
I
G
I
D
V I I F R G N N R N P R G F H N T Y V F F I N R R K N Y F F Q K D K I V V L Q L Q * |
Comments=Pseudogene, good start found, extended gene <=100aa and <70% median/second shortest homolog | |
| Desmer_00012330, Desmer_00012340 | 1287636 | 1288959 | join (1287636..1288283, 1288282..1288959) | putative pseudogene |
a
t
g
t
t
t
g
a
a
t
t
a
a
t
c
a
a
g
g
g
a c g g t t a t g g c a a g t g t t g g g t c t c c t a a t g c t a a t a t t t g t a g c t g t a g c t a t c c c g g c a a c t c c g g t t c a a g c t c a a g a a a a t t g t c t t c a a t g c c a t g g g g a t c a a a a a a c t a a g a t t g a a a g a t c g g a a c a c a g c t t t t t a a g t t g t a c c a g c t g t c a c a c a g g a a t t a c t g g g t a t c c c c a c t c t c a a g g a g c c g c a t t a a a t a a a a a a g a a a g t g t a g c c a c c t g c a c a a g c t g t c a t a a a g g t c a g g t a a c g g a t a g t t a t g c c a g a a g t t t t c a t g g t a a a g c t g t t c a t c t g g g a a g t g a a a a g t c t g c c a g t t g t g c c g a t t g c c a t g g c t t c c a c g a t a t t c t c g g t c c a a a t a g t t c a g g c t c t a a a g t a g c t a a a c a a a a c a t t c c a g a t a c t t g t g c c a g t t g t c a t g g g a a g g c a t c a c c t g g a t t t g c a g a a g g a g a g g a t c a c t a c g a g c t t a a g c c t g g c g g a c c a g g a g c t c c a a t g t a c t a t a c a g g t a a g t t t t t t a t c t g g c t t a c c c t g a t c a t t a t t a c a g c c t t a g t t a t c c a t a t t g a a c t t c a g c t a t t t c a t a a c c t g c g t a c a a t t c t t c g g g a a c g g a a a g a g g t g g c g a a t c g t g g a g a c a a t a a g g a t g t g t t t c a a c g t t t t g a t c t t c a c c a a c g t a t c c a g c a t a t c g g a a t g t t t a g t a g t t t t t t t g t g t t a a c a a t t a c c g g a t t a c c c a t t a a g t t t g a g c a a a a t a g t g t c t c t g t t t g g a t t g t a g c g t t g t t t g g c g g c t t c g a t a a t c t c t t t a c c g t a c a t c t t g c a g g t g g a g c a g t t a t g c t g t t a g c t t t t a t c t a t c a t t t a a t c t a c t t a g t c c t a t a t c c c t t g t t g a c t a a a a a g a c a t c c t g g g c a a t a t t g c c g a a g g g t a a a g a c t t t g t t g a c g t g g t t c a a g a t g t c c a g t a t t t a a c a g g t c t g a g a a a a g a t c c g c c t a a a t t c g a t c g c t a c a c g t a t a a a g a a a a a t t t g a c t a c t g g g c c g t c t t c t g g g g t a t g g c g a t t a t g g g c g g a t c a g g a t t a a t g a t g t g g t t t c c g g a g a t a t t t a c c c a g t a c a t a c c c a g g t g g g t a a t a g a t t c a g c t a g g t a t g c a c a t a c a g a c g a a g c a a t t c t g g c c a t c a g c g c t a t a t t t a t a t g g c a c t t t t t c a a c t c t c a c t t t a g c c c c a g g t t c t t t c c g a t g a a c c a t g t t t g g t a c a a a g g g a c c a t g t c t a g a g a a g a a a t g g a a g a a g a c c a c c c g t t g g a a t t a g a a a g a c t t g a a t c a g g g a a a t a g
M
F
E
L
I
K
G
R
L
W
Q
V
L
G
L
L
M
L
I
F
V A V A I P A T P V Q A Q E N C L Q C H G D Q K T K I E R S E H S F L S C T S C H T G I T G Y P H S Q G A A L N K K E S V A T C T S C H K G Q V T D S Y A R S F H G K A V H L G S E K S A S C A D C H G F H D I L G P N S S G S K V A K Q N I P D T C A S C H G K A S P G F A E G E D H Y E L K P G G P G A P M Y Y T G K F F I W L T L I I I T A L V I H I E L Q L F H N L R T I L R E R K E V A N R G D N K D V F Q R F D L H Q R I Q H I G M F S S F F V L T I T G L P I K F E Q N S V S V W I V A L F G G F D N L F T V H L A G G A V M L L A F I Y H L I Y L V L Y P L L T K K T S W A I L P K G K D F V D V V Q D V Q Y L T G L R K D P P K F D R Y T Y K E K F D Y W A V F W G M A I M G G S G L M M W F P E I F T Q Y I P R W V I D S A R Y A H T D E A I L A I S A I F I W H F F N S H F S P R F F P M N H V W Y K G T M S R E E M E E D H P L E L E R L E S G K * |
Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Desmer_00012530 - Desmer_00012540 | 1311643 | 1311855 | pseudogene, missed gene |
T
T
G
T
T
G
T
T
G
A
A
T
C
C
G
T
T
A
G
T
T T T A T A T C T T T T T A A A G T C G C C C G A A T C A A G C T A T C C G C C A A C A A A G T C A G C T T T C T C T A C A A C A A T A T A G C T A G A G A A T T T G A A G A G C T G C T G A A G G A A C T G A C T A A G C T G G C T C C G G C A G A T C C G G A A G C T C A T G A A A G G T A T A A G A G T G A G G T A A G C G G G C T G A T C G G T A A A A T A G C A G A G A G A C T G T A A
L
L
L
N
P
L
V
L
Y
L
F
K
V
A
R
I
K
L
S
A
N K V S F L Y N N I A R E F E E L L K E L T K L A P A D P E A H E R Y K S E V S G L I G K I A E R L * |
Comments=Pseudogene, good start found, extended gene <=100aa and <70% median/second shortest homolog. Found common hit with non-adjoining gene: Desmer_00001800 | |
| Desmer_00012610 - Desmer_00012620 | 1321330 | 1321502 | join (1321330..1321443, 1321443..1321502) | pseudogene, missed gene |
a
t
g
c
g
c
c
t
t
t
t
t
g
a
a
g
a
g
t
a
t g g g g c c a a g c c c a c c g c t g g a t a g g a c a g t t c a a a t t c g g a t c c g a a t t t g a a c t a c a c c c a g g c g g t t a t c c t c t g g g g a a t t c c c g a g g a g g a a a t g a g a g c c t t t a t a g c a g a a a a t g a t g t a g c g a g t a t g t c a a c c c g g g a g c t t a a a
M
R
L
F
E
E
Y
G
A
K
P
T
A
G
*
D
S
S
N
S
D P N L N Y T Q A V I L W G I P E E E M R A F I A E N D V A S M S T R E L K |
Comments=Pseudogene, start/stop is absent. Found common hit with non-adjoining gene: Desmer_00001800 |
| Desmer_00012680 - Desmer_00012690 | 1327020 | 1327591 | join (1327020..1327307, 1327307..1327591) | pseudogene, missed gene |
c
c
t
g
a
a
t
g
a
a
t
t
g
t
t
c
g
g
g
c
t t t t c t g c c g a a a c t g g t a a c a g c a g g t g a a g t g t a c a c a g a g g a c c a t a t a g g t c a t a a g g a g g a c c a t a a c t c c t g a a g c a c a t t c a g c c t c g t t a a c g t g t g t t c g c a a a c g g a c a a a g t g c a g g t a a c c a c c t t g a t g a a a g a c t t t c t g a t t a c c c c t t t a a a g a a g c c g c c a a t g g t t c t t g a g c g g g t a a g g g a t a a c a t a a g a t c c g t a a g g g a t a g g c t g g t t a a t a c a a t t a t t g a a a a c a g g a a t g t c g a a a a a a c a a t a t c c a g t t a t g a c a g a a g c t c a a c g t t t t t c t a t t g c g a t c c g c c t t a t t a c g g c c t a g c t g a c t a c a a g a g c c a a g g g a g t a a g c c a t t t t c t a a g g a a g a c t a c g t c a g g c t a a a a g a a t t c c t c t c a a a a a t t c a t g g g a a g t t c t t a c t a a g t a t t a a t g a c c a t c c g g a g a t t c g g g a g c t t t a t t c a g g t t t t a a c a t t a g c t a g g c a g a a g t a a g a t a t t c g g t c t g c a g a a c c g a c a a a a c a a g t a a g g c c a g g g a g t t a t t c a t a a g t a a t t a t
P
E
*
I
V
R
A
F
L
P
K
L
V
T
A
G
E
V
Y
T
E D H I G H K E D H N S * S T F S L V N V C S Q T D K V Q V T T L M K D F L I T P L K K P P M V L E R V R D N I R S V R D R L V N T I I E N R N V E K T I S S Y D R S S T F F Y C D P P Y Y G L A D Y K S Q G S K P F S K E D Y V R L K E F L S K I H G K F L L S I N D H P E I R E L Y S G F N I S * A E V R Y S V C R T D K T S K A R E L F I S N Y |
Comments=Pseudogene, start/stop is absent. Found common hit with non-adjoining gene: Desmer_00043970 |
| Desmer_00013050, Desmer_00013060 | 1374355 | 1376478 | putative pseudogene |
A
T
G
A
C
T
A
T
T
A
T
G
A
A
T
A
A
A
C
C
C A A T A G A C T A T C C A A G G A A A A A T C A C C C T A T C T A C T C C A A C A C G C A A A C A A C C C T G T A G A C T G G T T T C C T T G G G G A G A T G A A G C T T T T C A G A A A G C G A A A G C A G A G A A C A A G C C A A T T T T C C T A T C T A T T G G G T A T T C C T A G T G G G T C A C G A A G T T T A C A T G T C A C T G G T G C C A C G T A A T G G A A C G G G A A T C C T T T G A A G A C G A T G A A G T T G C A G C C T T A C T A A A T C G C T A C T T T A T C T C T A T C A A A G T C G A C C G C G A A G A A C G C C C G G A C G T G G A T C A T T T G T A C A T G G C C T T C T G C C A A G C T C T C A C A G G A T C A G G G G G C T G G C C G C T G A C A A T T A T G A T G A C C C C C G A G A A A A A G C C G T T T T T T G C C G G G A C A T A T T T C C C A A A A A C A G A G C G C T A T G G C T A T A A G G G A A T G C T G G A G C T T T T A G A A C A A G T A G G G A C T C T C T G G G C A A C T A A T G A A C A T A A A T T A C G T G A G T C T G C G G A T C A G A T T G T G A A T G C T G T C C A T A C C G G A C G C T C A G T A C C C A A T A A A A C C T C T C C A G T C T C A A G T A A C C C T A A T G A T A C C T C G G A A T C C A T C C A A T C C T G G G G A A A T A A C G T T A T C T C C C A G G C A T A T T C C G T C C T T G A C C A G A G C T T T G A C T C A C G T T A C G G A G G T T T T G G A A G C G C C C C A A A A T T T C C A A C T C C A C A T A C A C T A A C C T T T C T C C T A C G C T A T G G G G A G G A T C A T C C T C A G G A C C G A G C C C G G G A A A T C C T C C G T A A G A C T C T C G A T G G T A T G G C T C T C G G C G G G A T C T A T G A C C A T G T G G G A T T T G G A T T T G C C C G G T A T A G T A C C G A C G A T A A A T G G T T A G T A C C T C A C T T T G A A A A G A T G C T T T A T G A T A A C G C C T T A T T A G C C C T A G C G T A T T T A G A A A G C T A T C A A G C A A C C A A C T T T T C T A A A G A T G C T C A A A T C G C C C A A G A G A T T T T C A C C T A T G T A C T G C G A G A T A T G A C A T C G C C C G A G G G A G G T T T C T A T T C A G C A G A A G A T G C C G A C G C T G A G G G G G A A G A G G G A A A A T T C C A C G T C T G G A C T C C C C A G G A G G T T G A A G C C G T T C T A G A T A A A G A G C T A G C G G C T A A G T A T T G T G C T G T A T A T G A C A T C A C T C C T A A A G G A A A C T T C G A A G G A A A A A A T A T A C C C A A C C T T T T A T T G G G A A A T A T C A A G C A G C T T G C C C A G G A G A A C T C T T T A T C T G A A G A G A A A G T A T T G C A A T C T C T A G A A T C C G C A C G G C A A G C A C T C T T T A A T G C A C G G G A A A A A C G A G T C C A C C C T C A T A A A G A T G A T A A G A T A T T A A C C T C C T G G A A T G G T T T G A T G A T T G C T G C C C T A G C A A A A G G G G C T C A A G T T C T G G G A G A C A C T T C C T A T T T G A A A G C A G C T G A A A G A G C A A C A G A C T T T G T A C T T A C T C A G C T C C G G C G A A G T G A C G G C C G T C T G A T G G C C C G T T A C C G T G A G G G T G A T A C T G C C T A T T T G G G A T A C T T A G A T G A T T A T G C C T T T C T A A T T T G G G G T C T T C T G G A A C T T T A C T C T G C A A A C G G C A A A C C T G A A G T C C T C C A A A C C A T C C T G G A A C T T C A A A A A C A A C A A G A T T C T C T G T T T T T T G A C G A A A A A G G C G G C G G A T A T T G C C T G A C A G G C T C A G A C G C A G A A G A A C T T C T C T T T C G C C C C A A A G A A A G T T A T G A C G G T G C C C T T C C T T C T G G C A A T T C C A T C A C T G C C C T C A A T T T A C T T C G T C T C G C C C G C C T A A C C G G A G A T G A A C A T T G G G A A C A A A A G G C C C A G C A G C A A T T G C T G G A C T T C C G A A C A G T T C T T G A A G A G C A T C C T T C A G G G T A C A C A G C A T T T A T C C A A G C T A T C C A G T A T G C G C T T C A T C C T T C T C A A G A A T T G A T A C T G G C A G G C T C C C T T A A C T C C A C T G A A C T T C C G G A A A T G C G T A A A C T T T T C T T C T C T G A G T T T C G T C C C T A T T C A T C A G T T T T G T A C C A A G A A G G A A G T A T T A G T G A T A T T G T C C C T T G G C T T C A T G A T T A C C C T G T T G A G C C G G A T C A A A C G A C A G C G T A T T T A T G C G A A A A T T T T A C C T G T C A A A G A C C T G T T C A C G A A C T G G C A G A C T T C C A A G C A C T T C T G A A C A A T T C A T A A
M
T
I
M
N
K
P
N
R
L
S
K
E
K
S
P
Y
L
L
Q
H A N N P V D W F P W G D E A F Q K A K A E N K P I F L S I G Y S * W V T K F T C H W C H V M E R E S F E D D E V A A L L N R Y F I S I K V D R E E R P D V D H L Y M A F C Q A L T G S G G W P L T I M M T P E K K P F F A G T Y F P K T E R Y G Y K G M L E L L E Q V G T L W A T N E H K L R E S A D Q I V N A V H T G R S V P N K T S P V S S N P N D T S E S I Q S W G N N V I S Q A Y S V L D Q S F D S R Y G G F G S A P K F P T P H T L T F L L R Y G E D H P Q D R A R E I L R K T L D G M A L G G I Y D H V G F G F A R Y S T D D K W L V P H F E K M L Y D N A L L A L A Y L E S Y Q A T N F S K D A Q I A Q E I F T Y V L R D M T S P E G G F Y S A E D A D A E G E E G K F H V W T P Q E V E A V L D K E L A A K Y C A V Y D I T P K G N F E G K N I P N L L L G N I K Q L A Q E N S L S E E K V L Q S L E S A R Q A L F N A R E K R V H P H K D D K I L T S W N G L M I A A L A K G A Q V L G D T S Y L K A A E R A T D F V L T Q L R R S D G R L M A R Y R E G D T A Y L G Y L D D Y A F L I W G L L E L Y S A N G K P E V L Q T I L E L Q K Q Q D S L F F D E K G G G Y C L T G S D A E E L L F R P K E S Y D G A L P S G N S I T A L N L L R L A R L T G D E H W E Q K A Q Q Q L L D F R T V L E E H P S G Y T A F I Q A I Q Y A L H P S Q E L I L A G S L N S T E L P E M R K L F F S E F R P Y S S V L Y Q E G S I S D I V P W L H D Y P V E P D Q T T A Y L C E N F T C Q R P V H E L A D F Q A L L N N S * |
Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to median/second shortest homolog in length | |
| Desmer_00013090 - Desmer_00013100, Desmer_00013100 | 1380591 | 1381700 | pseudogene |
G
T
G
C
A
A
A
A
A
T
T
A
G
C
A
T
A
T
A
A
G A A A T T A A T T A A G G C T C A A G A A G A G A C A A T T T C A A T T G T C G A A A G T A T G A C A G A T G G T T T T T A T G C C T T A G A T A G A G A C T T T C A A T T C A C T T A T G T A A A C C G C G C A G C T G A A G T T G C T T T T A G T A A A T C T C G G G A T G A G G T A T T G G G C A A A A A A A T A A C T C A A G T A T T T A A G G C T A A T G A A A C C A T C C T A T T G A A C T A T A A T A A A G T A A T T T A C G A A A A T T G C C C A A T A A C T T T T G A A A T C A T C T C T G A A G C T C T A G G C A A T A A A T G G T T A G A A A T A A A T G C T T G C C C T A C A G A C A A T G G A C T A G C T T G T T A T T T C C G T G A T A T T A C A A G T C G T A A G T C A G C A G A A G A A A A C C T C T T G G A C G G A G A G C A T T G T C A T A T A A C G G G G A T T A T G G A C G T T A C C G A A C A A A A G C G T A T T C A A A A A G A G A T G G C T A A T C T T G A G C G T T T A A A C C T G G T G G G T C A G T T G G C T G C T G G T A T A G C C C A C G A A A T A A G G A A T C C G A T G A C G A C A G T T A G G G G T T A T C T T C A A C T T A T A T C T G C A A A A C C C A A T T A T G C A G A C C A G A A G G A T G C C T T C A A C T T G A T G A T T T C G G A G C T A G A T C G T G C A A A C T T T A T T A T T T C G G A A T T T C T T G C G C T G G C T C A A A C T A A A C C T A C T G A A T T T A A A T C C C A A A A T C T T A A C G A C A T T G T T A C T A A T T T A T A C C C A C T T C T A G A G G C A G A T A C T T T T A C G C A A A A C A A A A A A A T C C G T T T T A T T C C C G G T G A A A T T C C C A A T T T G G A T C T T G A C G G A A G A G A A A T C T G T C A A C T G T T A C T G A A T T T A A C A C G C A A T G G A C T T G A A G C A A T G G G G G T G G G T G G T T C T C T A A C T A T T A A A A C T T A T G T A G A G G A C A G T A C G G T A G T G C T T T C A A T T A A A G A T G A G G G G T C T G G C A T T C A A C C A G A A A A C C T C A A G A A A T T A G G A A T C C C C T T C T A T A C A A C T A A A G A C A G T G G G A C T G G G T T G G G T C T A C C A A C T T G C T T T A G A A T T G C A G A A T C T C A T A A A G C T A A G C T A A A G A T A T T C T C T A G T T C C G G T G G G A C A A C T A T C T G T A C A C T T T T C C C C A T T C C G G A T G A A T G A
V
Q
K
L
A
Y
K
K
L
I
K
A
Q
E
E
T
I
S
I
V
E S M T D G F Y A L D R D F Q F T Y V N R A A E V A F S K S R D E V L G K K I T Q V F K A N E T I L L N Y N K V I Y E N C P I T F E I I S E A L G N K W L E I N A C P T D N G L A C Y F R D I T S R K S A E E N L L D G E H C H I T G I M D V T E Q K R I Q K E M A N L E R L N L V G Q L A A G I A H E I R N P M T T V R G Y L Q L I S A K P N Y A D Q K D A F N L M I S E L D R A N F I I S E F L A L A Q T K P T E F K S Q N L N D I V T N L Y P L L E A D T F T Q N K K I R F I P G E I P N L D L D G R E I C Q L L L N L T R N G L E A M G V G G S L T I K T Y V E D S T V V L S I K D E G S G I Q P E N L K K L G I P F Y T T K D S G T G L G L P T C F R I A E S H K A K L K I F S S S G G T T I C T L F P I P D E * |
Maingene=Desmer_00013100; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and >50% and <70% median/second shortest homolog, Blast redone with 250 hits and e-05, extended gene <70% median/second shortest homolog | |
| Desmer_00013110 - Desmer_00013120 | 1383764 | 1384050 | complement (join (1383764..1383820, 1383820..1384050)) | pseudogene, missed gene |
A
T
G
T
T
G
C
A
T
T
T
G
G
C
A
A
C
A
A
A
A G G T C A A T A C C C A A T C C A C A G T C A G T C C A T T C A A G C G A T C T A C G A A A A A T A C C T C G A T G C T A G A G A A A A T G C C C A T A A A G C T A G A T C C T T G G G A T T C A C C C A A A T T C G G T A C C C G T A T A A A G A T A A A A A G C A C T T C A A T A C C A A G T G G C T T T C G G A T T G A T A A A A A C G A A G A A T T G A G T T A A G T T T G G G G C T T T T C A A T A G C A G A C G C C A A A A A C C T A T C T C G G T T T G G G T T A A G G A T T T G C C T C C C G A T A A T C A A G A A T A T C G T T A A
M
L
H
L
A
T
K
G
Q
Y
P
I
H
S
Q
S
I
Q
A
I
Y E K Y L D A R E N A H K A R S L G F T Q I R Y P Y K D K K H F N T K W L S D * * K R R I E L S L G L F N S R R Q K P I S V W V K D L P P D N Q E Y R * |
Comments=Pseudogene, >1 in frame stop codons |
| Desmer_00013180 - Desmer_00013200 | 1391333 | 1391482 | pseudogene, missed gene |
G
G
C
A
C
T
A
A
G
T
T
T
T
G
G
A
G
G
G
C
A T T C T G G T T T G A A T T T C C C T T T A T G C C A C T T C G T C T A A T A C C A A T C T T G T T C T T T G C A A T A G G T G G A C T C T G C T A T G C T A T C T G G G C A A T A A A G G C G A A G A A A T T A T T T G A T A A A A A A A T G A A T A A C T A G
G
T
K
F
W
R
A
F
W
F
E
F
P
F
M
P
L
R
L
I
P I L F F A I G G L C Y A I W A I K A K K L F D K K M N N * |
Comments=Pseudogene, start/stop is absent | |
| Desmer_00013190, Desmer_00013200 | 1391561 | 1392281 | join (1391561..1391776, 1391778..1392281) | putative pseudogene |
t
t
g
a
a
a
c
t
a
a
a
a
t
c
a
t
a
t
a
t
g c t g c t a a t a a t a t t t t t t g t g a t t t t c t c t t t t t t a c c a a c a a t t g c a t a t g c c a a t t c a g c a g a g c c c c c t g g g c t g a t a c t c a t t t t a a a a a a t g c t c c c g c a g a t g t c t c g g t t t c c a t t g t t t c c g c a g a c t c t a t t c a g g a a g g g a a a a a a a g g a a g g t t g c t t g g g a a a t c t a c t a t g c t t t c t a c a a a a g a g a t a t t g g a a a t a a t a a c g a a a t c t t a c t t a g g g t a t c g g g a a a t g g c g t a a g t t a c g a t c a a a t t g t t g g g a a g g a a t t c t t a a c c g g t t a c a a t a g c a t t g t c a c a t t g g a t t t c t c c t c g c a a a c c a t a g c g g c c g g a a a g a t g t t g t c c c g a t c a a t c c t t t t a g t a a c c c a g c g g g t a t t a t t c a c c t t a g t g a t t g a a g g t g t a a t c t t c a t t t t g t t t a g g t t c c g t g a c a a a a a g a g t t g g a t t g c c t t c c t g a t g a t g a a t t t a c t g a c a c a a g g g a t t t t a a a t g t a g c c c t a a a c g g g g c t t c c c c t t t t g c t a g c t a t t t g a t t t t c a a c c t g a t t t t g a t g g a a t t c t t t g t a c t t t t c g c t g a a c t t g t a g g t g t t c t t g t t t t t a t c a a a g a a c a t g g t a g a t t c c g t c g g g t t t c t t a t g t a t t g g t t g c a a a t c t g g c c a g c c t t g t a t t g g g c g g t t a t t t g a t c a c t g t t t t g c c a a t t t a a
L
K
L
K
S
Y
M
L
L
I
I
F
F
V
I
F
S
F
L
P
T I A Y A N S A E P P G L I L I L K N A P A D V S V S I V S A D S I Q E G K K R K V A W E I Y Y A F Y K R D I G N N N E I L L R V S G N G V S Y D Q I V G K E F L T G Y N S I V T L D F S S Q T I A A G K M L S R S I L L V T Q R V L F T L V I E G V I F I L F R F R D K K S W I A F L M M N L L T Q G I L N V A L N G A S P F A S Y L I F N L I L M E F F V L F A E L V G V L V F I K E H G R F R R V S Y V L V A N L A S L V L G G Y L I T V L P I * |
Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Desmer_00013330, Desmer_00013340 | 1405213 | 1406639 | join (1405213..1405788, 1405788..1406639) | putative pseudogene |
a
t
g
a
t
g
a
c
t
g
a
g
c
a
a
a
a
g
a
a
a a a g c a a a a c c g g a t g c t t t g c g t a c t t a t g g a a g a c c t t g t c c c g a a a g g g c a t t t t c t a a g g a a a c t g g a c g c g g c g a t c g a t t t c a g t t t t g t c t a t g a a a t c a t g a g g c c g t t g t a c a g c g a t c t t g g a a g a c c g t c a a t t g a t c c g g t c g t t t t g g t g a a g a t g c t t t t a a t t g g c t a c t t g t a c g g g a t a g a t t c c g a a c g g a a g c t t g a g g a a g a a g t c a c a g t t a a c a a c g c c t a t c g c t g g t t t c t t g g c c t t g a c t t a g a g g a t a a a g t t c c g g a t c a c t c c a t c t t c t c c c a g a a c c g c c g a c g t a g a t t c a a a g a c t c a g a g g t g t t t c a g g a g a t a t t t c a t a a g g t c g t t a a a g a a t g t g c c g a g g c a g g a c t c a t a g g c g g t g a a t g t g t g g t c a t g g a t t c c a c t c a t a t c a a g g c c a a c g c c g c t a a c g g c a a c t c t g a a a c g a t g c t t c t c a t g g a a g g g c c g g a t g a c t a c t g g c a a a a g c t c a a t g a c g a a c a t g g t c a a a a g a t c c g g c a a a a a a g a g a a g a c g c c g a c a t g a g c c g t a a a a a t a a a a a a a a g t c c g t c t c c g a t c c t g a a g c c g g a t g g a t g c a t a g a c a c c c c a a g c c a g c a g g c t t t c a c t a t t t a t g c c a t c a a a g c t c g g a c a t c c a g t a t g g t a t c g t a a c c g a c g t g c a t g t c a c c c c t g g t g a t g t g a c a g a c g c g c c c t a t t g t g t t a a a c g g a t a g c a t c t c a g a a g c a a a a a c t a a a g a t t g c c t a c c g c t t t g c c g g a t t g g a c a g c g g c t a t g a t a c a g t a g c a g t c c a t c a c g a g t t a c a t g a g c t t g g t a t g a g g g g g t a t a t c c a t c t g a a t a c c g g c c a t a a t g c c a a t t g g c g c a a a g a a a g a g g g c t g t t t a g t a t t g a c g a c t t c a a c t a t g a t g c a a t a a a t g a c c g t t a t a t c t g t c c a a a c g g c t g c a c g c t g c g t t a t a t c g g c g t g a g a a a a g t a c g a t a t a g a g t c g g c a a a a a c t a c g t a t c c c a g t c a a a a g a c t g t a a a t g c t g t g c c a a g a a a a g c c g c t g t a t t a c c g g a a a a g c c g g t t a c a a g g a a g t c c g a c g t g a t t t t t a t c a a g a g g a t c a g g a a c g t a a c c a c g c t t t a a t c g g t a c t g c c c t a t a c c g c t a t g t g a t g c g a a a g c g g c a g g t g a t c t g t g a a g g g a a t t t t g c t c t t c a a a a g c g a t g t c a c a a t c t a a g g t t c a c t c g c a a g c g a g g c a t t g a g a a a g t t c g a g a g c a a t g c c t c t t t t c g g c g a t g g c a c t g a a c c t g a a a c g a t t g g t g a a a t a c g g g a c a g c g c c g t t a a g g c c g g c t g t c t c g t c t c t a t t t t a t a g t c t g a a t t a t g c t c t g c a a a t g a a t c t c c c g t t a a g a a c t t g t t g a
M
M
T
E
Q
K
K
K
Q
N
R
M
L
C
V
L
M
E
D
L
V P K G H F L R K L D A A I D F S F V Y E I M R P L Y S D L G R P S I D P V V L V K M L L I G Y L Y G I D S E R K L E E E V T V N N A Y R W F L G L D L E D K V P D H S I F S Q N R R R R F K D S E V F Q E I F H K V V K E C A E A G L I G G E C V V M D S T H I K A N A A N G N S E T M L L M E G P D D Y W Q K L N D E H G Q K I R Q K R E D A D M S R K N K K K S V S D P E A G W M H R H P K P A G F H Y L C H Q S S D I Q Y G I V T D V H V T P G D V T D A P Y C V K R I A S Q K Q K L K I A Y R F A G L D S G Y D T V A V H H E L H E L G M R G Y I H L N T G H N A N W R K E R G L F S I D D F N Y D A I N D R Y I C P N G C T L R Y I G V R K V R Y R V G K N Y V S Q S K D C K C C A K K S R C I T G K A G Y K E V R R D F Y Q E D Q E R N H A L I G T A L Y R Y V M R K R Q V I C E G N F A L Q K R C H N L R F T R K R G I E K V R E Q C L F S A M A L N L K R L V K Y G T A P L R P A V S S L F Y S L N Y A L Q M N L P L R T C * |
Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Desmer_00013470 - Desmer_00013480, Desmer_00013480 | 1432847 | 1433344 | pseudogene |
A
T
G
G
C
C
A
T
T
G
T
C
T
T
G
C
C
T
C
A
C G G T G T C T T G T T C C G T G G T G C G G C G G A A G G T G C C A T T C G T C A A A C C A T C A T T G A A A A A A A C T A C C T G G A T A C A G T G A T T G G G T T G C C T G C C A A C T T G T T T T A C G G T G T A G G A A T T C C A A C C A C G A T T T T A G T A T T C A A G A A A A A T C G T A A A A C A A A A G A T A T C T T C T T T A T C G A T G C C A G C A A C G A A T T T G A A A A A G G T A A G A A T C A A A A T A A A C T T A C T C A T G A A A A C A T C A A T A A G A T T A T T G C A A C T T A C A A A A A T C G T G G G G A T G T T G A T A A A T A C G C G C A T G T G G C A T C A C T T G A A G A A A T C A A A G A A A A C G A G T T T A A C T T A A A T A T T C C T C G T T A T G T G G A T A C C T C A G A A G A A G A A C A A G T C A T T G A T C T T G A T G A G G T G A A T A A G C A G C T A G A G C A A G A T A A A C A A G A A A T C G C C G A G C T T G A A G C A A A G A T C A A T G A A C A G T T G A A A T T T T T G G G A A T T A A T G T G T A G
M
A
I
V
L
P
H
G
V
L
F
R
G
A
A
E
G
A
I
R
Q T I I E K N Y L D T V I G L P A N L F Y G V G I P T T I L V F K K N R K T K D I F F I D A S N E F E K G K N Q N K L T H E N I N K I I A T Y K N R G D V D K Y A H V A S L E E I K E N E F N L N I P R Y V D T S E E E Q V I D L D E V N K Q L E Q D K Q E I A E L E A K I N E Q L K F L G I N V * |
Maingene=Desmer_00013480; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and <50% median/second shortest homolog | |
| Desmer_00013570 - Desmer_00013600 | 1440458 | 1440617 | join (1440458..1440586, 1440585..1440617) | pseudogene, missed gene |
a
t
a
g
a
c
t
t
c
c
c
c
t
t
t
g
g
c
g
a
t a a t a t c a t a c g c g c t c a t a a a a g t g g t g t g a a a t a t a t c g c a c a a c c a g g c g g g t c t a t c a g a g a t g a t a a c g t t a t t g a t a t c t g t g a c a a a t a t a a t a t g g t a a t g t g c t t t a c t g g a a t c c g a t t a t t c c a t c a t t g a
I
D
F
P
F
G
D
N
I
I
R
A
H
K
S
G
V
K
Y
I
A Q P G G S I R D D N V I D I C D K Y N M V M C F T G I R L F H H * |
Comments=Pseudogene, abnormal start as well as frameshift |
| Desmer_00013650 - Desmer_00013660 | 1448604 | 1448738 | pseudogene, missed gene |
A
T
G
C
A
G
G
G
C
C
T
G
T
T
G
G
A
T
G
A
A C T G G A T A C A A T T G A G C T G T T T G A A G C T C C C G G G C A T G G G C G G A T C T T A G G T G A G G T G A C T A A A A A A C A A G A A G G C A T C T A C A A A G C C T T A G G C G T A G A T G C A C C C T C G T T A T A A
M
Q
G
L
L
D
E
L
D
T
I
E
L
F
E
A
P
G
H
G
R I L G E V T K K Q E G I Y K A L G V D A P S L * |
Comments=Pseudogene, good start found, extended gene <=100aa and <70% median/second shortest homolog | |
| Desmer_00013680, Desmer_00013680 - Desmer_00013710 | 1452037 | 1452750 | putative pseudogene |
A
T
G
A
A
A
A
G
G
T
T
A
T
G
C
T
T
C
T
T
A C T A G C A G T A T T A T T A C T T A C T T C A A T A G G T A C A T G C C C A A G T G C A C T C G C C G T A A G T T A T G A A T T T A C A A A T T C A A A T C C A A A T G T A A A T T C T G A A C T A A A T A G A G G A A A T G C G G C C G A T T A T G C G G T A G A T T T T G C A A G A A A A C C G G G G A A T A C A G A C G A C T A T G C A A G T T A C G G A A G T G G T A C A T T A G G T G G G G A T T G T A C A A A T T T T G T C T C T C A G G T A C T A A G A G G A G G G G G G A T G A A C T T C C A C G G A A C A A A A G G A A G T A A C A T A T T T A C C C A A G A T T G G T A T T A T T A C G G G C C T A A T A T T C C G C C T G C T A C A C A A C C A A G A A C T T C A A C A T G G A C T G G A G C A C A C G A G T T T A G A A A A C A C T G G G G C A C C G T A G A T G G A G T T G G A G G C A A A A A A G C C T A T C A A A T G G T G A A A T A T A C C A A T C T T G A A G C A A G T A A T A A T T T T G A C A G T A T A T A T A C T G A A C T T T G G C C T G G T G A T A T A A T A C A A T T T A C T G A C G C T A A T G G T T T G A C T G G T C A T T C A A T T G T T A T C T G G A A A T A T G G T A T G G T T G A T G G T G T G A A A A C A A T G A A T T A T G C T C A A C A T T C T A C C G A T A A T G G G A C T T G G G A T T G G G C A C T T G A C T T G A G A A C A A G G C T T T C G A A T A A C A A A A A T A A T C C T G G C T T T A C C T A T A C T T T A A A A A T G A G A A A T G G T T C A T A A
M
K
R
L
C
F
L
L
A
V
L
L
L
T
S
I
G
T
C
P
S A L A V S Y E F T N S N P N V N S E L N R G N A A D Y A V D F A R K P G N T D D Y A S Y G S G T L G G D C T N F V S Q V L R G G G M N F H G T K G S N I F T Q D W Y Y Y G P N I P P A T Q P R T S T W T G A H E F R K H W G T V D G V G G K K A Y Q M V K Y T N L E A S N N F D S I Y T E L W P G D I I Q F T D A N G L T G H S I V I W K Y G M V D G V K T M N Y A Q H S T D N G T W D W A L D L R T R L S N N K N N P G F T Y T L K M R N G S * |
Maingene=Desmer_00013680; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene >100aa and between 70% median/second shortest homolog and 90% median/second longest homolog | |
| Desmer_00013710, Desmer_00013710 - Desmer_00013730 | 1453907 | 1454192 | join (1453907..1454047, 1454049..1454192) | pseudogene |
a
t
g
c
t
c
a
a
a
a
t
t
g
t
t
t
t
t
c
c
t a t t t g c t g t g g a g t t g a t g t c c a c a a g a a g t t t g t t g t c g c a a c g a t t g g t a c t a c g a a c a a a t c g g g g g t t a c g g a t t a c c a a a c g a g g c a a t t t t c a a c c t t t a c c g a a a a t t t a t c a c a a c t t t t a g a t t g g t t g a a a g c t c a a g c t t g t a a a c a t g t c t g t a t g g a g t c t a c a g g c a a g t a c t g g c a c c c a g t t t t c a a t g t t t t g g a a g a c t a c t g t g a t g t t g t c g t t g t c a a t c c a a a g t a t c t c c c a a t c g a t t a g
M
L
K
I
V
F
P
I
C
C
G
V
D
V
H
K
K
F
V
V
A T I G T T N K S G V T D Y Q T R Q F S T F T E N L S Q L L D W L K A Q A C K H V C M E S T G K Y W H P V F N V L E D Y C D V V V V N P K Y L P I D * |
Maingene=Desmer_00013710; Extension SUCCEEDED with start of type START; Comments=Pseudogene, gene with one frameshift, <80% median/second shortest homolog |
| Desmer_00013720, Desmer_00013730 | 1454563 | 1455818 | join (1454563..1454661, 1454663..1455133, 1455135..1455818) | pseudogene |
g
t
g
c
t
a
g
a
a
t
g
g
c
t
c
g
g
a
g
a
a a a t t g t g c t a c c a a t a a g a a a g c t t c a a a t t c a a a c a a g a a a a g t a a a g c t c c c g a a a t t c a t g a t g a g t t a t t a t a t g a a t a t t g g c g c a a t t c c c g g a g c a t a a t t t c t g a a t t t a a t t g c t a c g g a g g a g g a c c t g a g g a g g a a g a a g a g g a g g c t t a t g a a t g g t t a g a g a a g a t t t c t g g c t t g a t a a g g g a a a a t a a g a t t a c a c c t g a a g c a a a g c g c c g t t t t a t g g a t g a a g c g t t t a t t g a a t a c g a t g c a g g t a a t t c c g g t t t t g a c g a c a g t c t g a t g g a t c t g t t t t t t g a a t t g t g c a a a g a a a a g g a t g a a t g g g a a t t t c t t g t g c a a a a g c t t a a t a g a g g g a a g t c t g a t t g g g g a a a g a a g c t t g t c a t g g a g a t t t a c a g g g a t c a t c t g a a g g a t g a t t c c a g g t a c t t g g a g g a g a g a c t t a a a a a c c t t c a a t a t g g g a t g g a t t a t t g g g a t t t a g t t c a a t a c t a t a c c g a c a a a g g a a a t g a g g a a t t g g c g c t t g a a a t a g c g c a t a a g g g c a t c a a g c a t g g a a a a g g a a g a c t a a c c g a g c t g t a t g a t t a t c t t a t t g a c c a t t a t t c g c a g c t g c g g g a c a a g g a c c g g t t g g a a t c a a t t g c t g a a a c c g c a a t g c a a a g a g a a a a t g a t g a a a g c t a t g t t t t g g a a a g a c t a t t t a c a t t t t a t a a g g a t g a t g a c t a c g a a a a g g c g a a a g a a a a g t t g a t t c t g g t a t a t a a a a c g a c c a a t c a c a a a a a g t a t t t t g a a g a a t a t a a g a g a a t g a a a a a t t t t c t a t c t g a a t t g g a t t g g g a g a a a a t a g a a c c g g a g a t t g t t a a t g a g g c c c a a a a a a a t a a c a t g c a t g a c t a t t t a a g t a t t t g t c t t c a a a a g g g a a t g a a g g a c a t t g t t c t t a a a a c t a t c a t a t c c c c g c c g g t g a a c c a a t g g g g a t a t g c c g g c t t t t c t g a t t t c g a c a t a t t c g c g c a a a a g c t t g a a a a a g a a c a c c c a a a a g a a a t t c t g g a g t a c t a t t a c a a c a a a g c a t a t g c t a g a a t t c c a a a t g g t a a t a g a a a t a c c t a c a a a g a a g c t g t a g a a t a t c t t g g g a a a g t t a a a g t a a t t t a t t t a a a g c a t t t t a a g g a c g a g g a t a g c t g g a c c c a t a t g c t c a g t a a a c t g c t t a t g g a g t t t a a g a a a a g a c c c g c a t t t a t t g a t g a g a t t a g g a a g a g t a a g t t a t a a
V
L
E
W
L
G
E
N
C
A
T
N
K
K
A
S
N
S
N
K
K S K A P E I H D E L L Y E Y W R N S R S I I S E F N C Y G G G P E E E E E E A Y E W L E K I S G L I R E N K I T P E A K R R F M D E A F I E Y D A G N S G F D D S L M D L F F E L C K E K D E W E F L V Q K L N R G K S D W G K K L V M E I Y R D H L K D D S R Y L E E R L K N L Q Y G M D Y W D L V Q Y Y T D K G N E E L A L E I A H K G I K H G K G R L T E L Y D Y L I D H Y S Q L R D K D R L E S I A E T A M Q R E N D E S Y V L E R L F T F Y K D D D Y E K A K E K L I L V Y K T T N H K K Y F E E Y K R M K N F L S E L D W E K I E P E I V N E A Q K N N M H D Y L S I C L Q K G M K D I V L K T I I S P P V N Q W G Y A G F S D F D I F A Q K L E K E H P K E I L E Y Y Y N K A Y A R I P N G N R N T Y K E A V E Y L G K V K V I Y L K H F K D E D S W T H M L S K L L M E F K K R P A F I D E I R K S K L * |
Comments=Pseudogene, > 2 frameshifts in gene |
| Desmer_00013810 - Desmer_00013830 | 1466659 | 1466901 | putative pseudogene, missed gene |
G
T
G
G
G
A
G
G
A
C
T
G
T
C
G
G
A
G
C
A
T C C T G G A A T T G G T G T G C C G C T A T C T T C T G T A G G A G A T A T T C A G A C T G A C T A T C G G T T T C T T G T C T G T G C A A A T C A C C T T A T A T T T T A C A G G T G C G A A G A T G G A G T T G T T T T C G T G T C G A G G A T C T T G T A C T T C C G G C G G G A T T G T A T G C G G A T A C T G T T C A A T G A T T T A C A G A A G A G T G A A A A A T T G A A T A C A T T G G G G C G A C A T T T T T T G T T G G T A A T G T A A
V
G
G
L
S
E
H
P
G
I
G
V
P
L
S
S
V
G
D
I
Q T D Y R F L V C A N H L I F Y R C E D G V V F V S R I L Y F R R D C M R I L F N D L Q K S E K L N T L G R H F L L V M * |
Comments=For manual analysis, pseudo, good start found, extended gene <=100aa, >70% median/second shortest homolog, <80% median/second longest homolog | |
| Desmer_00013870 | 1471681 | 1471995 | pseudogene |
T
T
G
G
A
G
G
A
G
A
T
T
G
C
A
A
T
G
C
A
A G A C C C A G T G T T G A A T C A A G C G A T G G A C A A A T G G G A A A A G T C A A G C G A T G A T C C A A A G A T A C G C G A A G A A T A T T A T G A T A G G C G C A A G G C G A T C C T G G A T G A A A T G G C T G C G G T T A G A G A A G C T G A A C T G A G G T T A C G A G A G G C A A T A A G G C A A A G T G A A A A A G A A G G C A G A G A A G A A G G T A G A G A A G A A G A A A A A A A G A A A G T A A C A A A A A A A C T T C T T G A G A A G G G T A T G G A T T T T A A G T C A A T C T C C G A C A T T A C A G G T A T G T C C G A A G A G G A G A T A A A G A A T T T A A G A T G A
L
E
E
I
A
M
Q
D
P
V
L
N
Q
A
M
D
K
W
E
K
S S D D P K I R E E Y Y D R R K A I L D E M A A V R E A E L R L R E A I R Q S E K E G R E E G R E E E K K K V T K K L L E K G M D F K S I S D I T G M S E E E I K N L R * |
Maingene=Desmer_00013870; Extension SUCCEEDED with start of type START; Comments=Pseudogene, good start found, extended gene >100aa and >50% and <70% median/second shortest homolog, Blast redone with 250 hits and e-05, extended gene <70% median/second shortest homolog | |
| Desmer_00013880, Desmer_00013890 | 1472319 | 1473509 | putative pseudogene |
A
T
G
T
C
T
G
A
G
A
A
A
A
T
T
A
T
A
C
A
C C T A A A C G A A G G C G T C A T A A A G C A G G A G T T A A A G G A A C T A G T C C G T C A T A G T G T T G A G G A A A C T C T T A A T A A C C T T C T G G A T C A G G A A G C T A A T G A G C T G A C G A A T G C C G G T C G A T A T G A A C G T A C T G A G G A T C G T A A A G G G T A C C G A T C G G G T C A T T A C G A G C G A A A T C T A A C C A C T A C C T C T G G G G A G G T T A A G T T G A A A A T G C C T A A G C T T A A A G G A G T T G C C T T T G A A A C A G C C A T T A T C G A A C G A T A C C G C C G A C G A G A A A G C T C C G T T G A A G A A G C T T T G A T T G A G A T G T A T T T A G C C G G T G T T T C A G T T C G T C G A G T T G A G G A C A T C A C T G A A G C C C T G T G G G G A A C T A A A G T A T C C G C C G G G A C A G T C A G C C A G C T T A A T A A A A A A G T C T A T G G G C A C A T A G A C A C G T G G C G T A A A C G G C C T C T G C A G G G T A A G T A T C C C T A T G T C T A T G T T G A T G G T A T C T A C C T C A A A C G C A A C T G G G G C G G A G A G T A T G A G A A T G T G G C T A T C T T A A T T G C T A T G G C A G T C A A T G A A G A C G G T T A T C G A G A A G T C A T T G G T G C C T C C G A A G G A A T G A A A G A A G A C A A G G C C A G T T G G C A T T A G T T C C T T A A A A G C T T A A A A G A G C G T G G C C T T T C C G G A G T C C A A T T G G T G A T T G G A G A C A A A T G C C T G G G A C T C C T G G A G G C A G T G A A T G A A A C C T T T C C T G A A G C A A A A T T C C A G C G A T G T A A T G T C C A T T T T T A T C G A A A T G T G T T T T C A G T A A C A C C T C G A T C G A A G A C G A A G G A A G T C G C A G C T A T G T T G A A G G C A A T T C A T G C T C A G G A G G A T A A A G C T G C G G C C A A A G A A A A G G C A G C A G C A G T T G T A G T C A A A C T C A A A G A C A T G A A G C T G A A A G A A G C G G C A A A G A A G G T C G A A G A C A G T A T C G T A G A A A C A C T A A C C T A C A T G G A T T T T C C A C A A G T A C A C T G G A C A A A G C T G C G G A G T A A C A A T G T C A T C G A A C G A T T A A A T C G G G A A A T T C G T C G G A G A A C T C G A G T C G T T G G T A C A T T T C C T G A C G G A A A C T C G G C A T T G A T G C T T G T G T G C G C T A G A T T G C G A C A T G T A G C C A G T A A A G C T T G G G G A A C A A A A A T G T A T A T G A G C A T G A A A C A T C T T G A A G A A A T G A A C A A A G A A A A A A A C C A A A T A G C C G G T T A A
M
S
E
K
I
I
H
L
N
E
G
V
I
K
Q
E
L
K
E
L
V R H S V E E T L N N L L D Q E A N E L T N A G R Y E R T E D R K G Y R S G H Y E R N L T T T S G E V K L K M P K L K G V A F E T A I I E R Y R R R E S S V E E A L I E M Y L A G V S V R R V E D I T E A L W G T K V S A G T V S Q L N K K V Y G H I D T W R K R P L Q G K Y P Y V Y V D G I Y L K R N W G G E Y E N V A I L I A M A V N E D G Y R E V I G A S E G M K E D K A S W H * F L K S L K E R G L S G V Q L V I G D K C L G L L E A V N E T F P E A K F Q R C N V H F Y R N V F S V T P R S K T K E V A A M L K A I H A Q E D K A A A K E K A A A V V V K L K D M K L K E A A K K V E D S I V E T L T Y M D F P Q V H W T K L R S N N V I E R L N R E I R R R T R V V G T F P D G N S A L M L V C A R L R H V A S K A W G T K M Y M S M K H L E E M N K E K N Q I A G * |
Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to median/second shortest homolog in length | |
| Desmer_00013930, Desmer_00013930 - Desmer_00013940 | 1477019 | 1477279 | pseudogene |
A
T
G
A
C
T
T
T
A
G
C
T
C
A
A
A
A
G
A
T
T G A G C A A A T C T T A A A A G G T G A A T T A A A A C C G G A A A G T A T T A A A A C G A T T A T A G A T T T A G C A G A A T T T T T A A A G G T T A G A G A T A G C C A A A A C A A A T G G G A T C A A A T T A A T G A G T C C G A A C A T G A A T T T A T T A C T G C T G A A G A A C A G T C C T A T C T T G A A G A A G T A A A A G C G A A A G G T C A A T T T A T T G A T C A A G A T G A A C T T C T A A A A G A A T T G G G G A T A A A C A A A G A T G A G A T A C A A T A T T A A
M
T
L
A
Q
K
I
E
Q
I
L
K
G
E
L
K
P
E
S
I
K T I I D L A E F L K V R D S Q N K W D Q I N E S E H E F I T A E E Q S Y L E E V K A K G Q F I D Q D E L L K E L G I N K D E I Q Y * |
Maingene=Desmer_00013930; Extension FAILED; Comments=Pseudogene, failed extension, extended gene <=100aa and <70% median/second shortest homolog | |
| Desmer_00013930 - Desmer_00013940 | 1477314 | 1477514 | pseudogene, missed gene |
T
T
G
G
A
C
A
G
A
A
A
T
A
C
A
C
A
A
G
T
T A G A A T A A T T A A T G C T A T A A A C C A A C T T C C G G T T G G T G A T G T T A A A A A A T T G T A A G A A A G T A T T G A C A A C T A C A G A T T A A G A G T T G G T A A T T A C A G A A T T G T A T T T A G C A A A G A T G A T G A A A A C A T A G T A A T T A G T A T C A T C A A A A T T G G T C C T C G C G G A G A A G T T T A T A A G A A A T T A T A A
L
D
R
N
T
Q
V
R
I
I
N
A
I
N
Q
L
P
V
G
D
V K K L * E S I D N Y R L R V G N Y R I V F S K D D E N I V I S I I K I G P R G E V Y K K L * |
Comments=Pseudogene, TAA stop codon in frame. Found common hit with non-adjoining gene: Desmer_00025600 | |
| Desmer_00014010 - Desmer_00014020, Desmer_00014020 | 1483344 | 1483613 | pseudogene |
T
T
G
C
C
G
G
A
C
C
T
C
A
T
C
T
G
T
G
A
T A A A G C A A A A A T T G A T G A T A A A G G A T G C A A C G G A G C A C C A G A T A T G A T C A T T G A G G T C A T T T C T C C T T C A T C G A T A A A A A T G G A T A G A G T G G T A A A G T T C A A T A A A T A T G A A A A A G C T G G T G T T A A A G A A T A T T G G A T T G T C G A G C C A G A T C A G A A A C T C G T T A G T G T A T T C G T C T T A C A A A T T A A C C T G A T T G T C T C T G T T C C A G G C A G G A T T A G T A C C C A G G T T G G A C A A C T T C G C T T T G G G C G A T G A
L
P
D
L
I
C
D
K
A
K
I
D
D
K
G
C
N
G
A
P
D M I I E V I S P S S I K M D R V V K F N K Y E K A G V K E Y W I V E P D Q K L V S V F V L Q I N L I V S V P G R I S T Q V G Q L R F G R * |
Maingene=Desmer_00014020; Extension SUCCEEDED with start of type START; Comments=Pseudogene, good start found, extended gene <=100aa and <70% median/second shortest homolog | |
| Desmer_00015010 - Desmer_00015020, Desmer_00015020 | 1585499 | 1586170 | pseudogene |
A
T
G
A
A
A
A
A
G
C
T
A
A
T
C
T
C
A
G
T
T G T T T T A A C A C T T G T T C T T A T G C T G T C A T T T A C T A C A A G T G T T T T T G C C T C A G A A T C A A A A A T T A C G A A A A A A A A T G G G T T T G A A A T G G A A A C T A T T G A T G A C A C C A A A G A A C A C C A A A A A A T A A A A T T C A C T A A C T T A G A A A C T G G T G A A G T A G A A T A T G T T G A A T C A A T T T T A G A A A A T G G T A A A T A C G T A T A C T T C T C T A C T A A T G A T G A A G G T A A A C A A A A A A T A G A A T C T G T A A A T G G A A C A A T C A A A A T A A C C G A C C A A G A A A C A A A A G A G G T T A A A T A T T T A A A A C C T A T T A A A A G T A C T A T T A A G G A T G A T A T A A A A G T T G A A G A T G C A T C T T C A C T T G C T G C G G C A T G G T G G G A A C A A G T T A A T A T G T A T C G T A G T A G C T A T G C G A T A G A T A C T G C T A A G T T A T C T T T A G T T G C A G G T A T A C T T G C A A G C A T T T A T G G A G G C C C A G T A A C A G G A G T A A T T A C C A G T A T T G C G T C T T A T T T G A T T T C A A T A A A T G C G C C A A A T G T A T G G T A T A T A G T T C G C C A A T A C C A G G A T C A A T A T G A T T T A A A C C A T T G G A T G G A T G A A A C A T A C T A T T A C G C A G A C C C A A A T T A C T C C A A T T T C A G A G G T G T A G A A G A C C G C A T C T A T T A T A C T G A T T A C A A T T A T T A A
M
K
K
L
I
S
V
V
L
T
L
V
L
M
L
S
F
T
T
S
V F A S E S K I T K K N G F E M E T I D D T K E H Q K I K F T N L E T G E V E Y V E S I L E N G K Y V Y F S T N D E G K Q K I E S V N G T I K I T D Q E T K E V K Y L K P I K S T I K D D I K V E D A S S L A A A W W E Q V N M Y R S S Y A I D T A K L S L V A G I L A S I Y G G P V T G V I T S I A S Y L I S I N A P N V W Y I V R Q Y Q D Q Y D L N H W M D E T Y Y Y A D P N Y S N F R G V E D R I Y Y T D Y N Y * |
Maingene=Desmer_00015020; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and <50% median/second shortest homolog | |
| Desmer_00015310 - Desmer_00015320 | 1617374 | 1617604 | pseudogene, missed gene |
A
T
G
A
C
T
A
C
C
G
C
G
G
T
G
C
T
T
A
C
A A C C C T C C C G C A G A A C A T A A C C T G C T C G A C A G T T G A G A T T A A A G T G A A T T T T A T C A A A C C G G T C A G T G C T G A A A G T A A A C T A A T A C G C T G T G A G G C T A G G A T C A T C C G T A T A G G A C G A A A A C T A G C C A C T G T A G A A T G A C G C A T T A A G G A C G G A A A T G A T G A A T T A T A T G C T C A T G G G G T G A G C A C C T G C C T G A T T T T T A A A G T G G G A T A A
M
T
T
A
V
L
T
T
L
P
Q
N
I
T
C
S
T
V
E
I
K V N F I K P V S A E S K L I R C E A R I I R I G R K L A T V E * R I K D G N D E L Y A H G V S T C L I F K V G * |
Comments=Pseudogene, TGA/TAG stop codon, no start found, extending to start of BlastX alignment | |
| Desmer_00015340 - Desmer_00015360, Desmer_00015360 | 1621338 | 1621538 | pseudogene |
T
T
G
G
C
A
T
C
C
G
G
C
A
G
T
A
G
T
A
G
C T G T G C G G C A G C A A G C G C T G C A T A T A A G T T A G G C T T A G T T G A T A A T C A A G T G A A G G T A C A T A T G C C T G G T G G A G T C A T T G A T A T A G A C A C T A A T A C T G A C G G A C A C G T T C A T A T G A C C G G T A A G G T T T C A A G T A T C G C A A G T G G T G C A T T T T C A G A C G A A A T T T G G C A G C G T T T G G G G T A A
L
A
S
G
S
S
S
C
A
A
A
S
A
A
Y
K
L
G
L
V
D N Q V K V H M P G G V I D I D T N T D G H V H M T G K V S S I A S G A F S D E I W Q R L G * |
Maingene=Desmer_00015360; Extension FAILED; Comments=Pseudogene, failed extension, extended gene <=100aa and <70% median/second shortest homolog | |
| Desmer_00015860, Desmer_00015870 | 1666066 | 1667589 | putative pseudogene |
T
T
G
A
C
A
T
A
C
A
G
A
G
G
T
A
T
A
C
A
T G C T G G T T C T A C T A G A A T G G A T G G G A T C G G G C T A A A T A T G T T T A C C T A C G A T G A G C T G T A C G A T G T A C A T T T A G C T A C A T T A G A T C T G C T T T G G G A C A T C G G A G T A A G A G T T G A A A G T G A A G A A G C A C G G G A A A T T T T C T A T A G T G C T G G A T G T A C T C T T A A T C G A A A A A C A A A T A T T G T C A A A A T A C C A G C G C A C T T A G T G G A A G A C G C T A T T C G C T C A A T T C C T A A A A C A T T T A G A G C T T G T G G A A G A A A A C G T G A A A A T G A T T G G C T G A A T G A A G G A A A T C G C A C T G G A T T T G T T A A C T T T G G T G A A G C T A T C C G A C T G A T T G A C C C T T A T A C T C G C C A A T T A A G G A A G C C G T T A A A A A A A G A C G T A G A T G A T G T G A C T C G C T T T T G T G A A A C A A T G G A T C A G A T T A T T G T T T T T G A A A G A G C T T T A G G G C C C T C G G A A G T T G A T C C G G A T G T T G C A C A A G T T C A T A T A G C G G A A T C A T T C T T C A A T T A T T C G A C A A A G C A C G C T T A T A T T G G G A T G A A T C G C C C G G A A A A T A T G C G C G C G G C T G C C A A A A T G G G C T A T C T T G T T T C C G G T G G C G A A G A T A A A T T C C G T G A A A G A C C C C T T T T C T C A C A A A G C A C A G A C C C T G T T G C T C C C T T A G T T C A T G C A A A A G G T G C G A C A G A C A C T C T T C T C C A A G C G A T T C G C T T A G G T G T T C C G G C A A A A A T C A A T T C C A T G G G T C T A G C C G G A G G A A C T A C C T G C G T T A A C T T G G C C A G T A C T C T A G T G A C T C A C A A T G C T G A A A T C T T A A G C A T G T T T G T C T T A G G T C A A C T C G T C A A A A G A G G G T A T C C A A T G G T T T A T G G T A C T T C T A C A A C C A T G A T G G A T C T G A G A A C A A C T G T T G C T T G T G T C G G A A C T C C T G A A C T G G C T C T C T T T A G T G C A G C T T G T G C C A A G C T T T C C C A A T T C T A T A A T A T T C C G G T C T G G G T T G C C G G T G G A T A G A C T G A T A G C A A A G T A C C G G A T G C C C A A G C A G C T C A T G A G T T T A C C C T A A C C G C T T T A T T A C C A G C G T T A G C A G G C G C T A A C A T G A T A T A T G G T T T A G G G A T G C T C G A A G G T G G C T T G A C T T G G G A T T A T G C T C A A A T G G T T A T G C A A A A C G A G A T G G C T C G T A T G A T T A T G C A T A C C A T T A A A G G G A T A C C C A T A A G T G A C G A A A A A A T G G C C T T G G A A G T T G T C C G T T C G G T A G G T A T C G G C G G A G A G T T C A T T A G C C A T G A A C A C A C T T A T G C G C A T T T T A A A G A G C T G T C T A A A A C A G A A T T G T T A G A T C G T A G G A A T A G A G A A A A C T G G G A A G C G G C T G G C A G T A A G G A T A T T G T C G A A A C C T C C T A T G C T A A A T C T A T T G A T A T T C T T G A G A A C T A C C A A A A T C A A A A T C C T C T G C C T G A A G A T A T T C A A C G T C A G T T G A A A G A A A T A G T C T T A G A A G C A G A A G C T G A A A C G A C T G A A A T T A A G G C T A A G G A A A A A G A A G C A A G A A G A A G A C C A A G A A A A C C G A A A T T C T A A
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F T Y D E L Y D V H L A T L D L L W D I G V R V E S E E A R E I F Y S A G C T L N R K T N I V K I P A H L V E D A I R S I P K T F R A C G R K R E N D W L N E G N R T G F V N F G E A I R L I D P Y T R Q L R K P L K K D V D D V T R F C E T M D Q I I V F E R A L G P S E V D P D V A Q V H I A E S F F N Y S T K H A Y I G M N R P E N M R A A A K M G Y L V S G G E D K F R E R P L F S Q S T D P V A P L V H A K G A T D T L L Q A I R L G V P A K I N S M G L A G G T T C V N L A S T L V T H N A E I L S M F V L G Q L V K R G Y P M V Y G T S T T M M D L R T T V A C V G T P E L A L F S A A C A K L S Q F Y N I P V W V A G G * T D S K V P D A Q A A H E F T L T A L L P A L A G A N M I Y G L G M L E G G L T W D Y A Q M V M Q N E M A R M I M H T I K G I P I S D E K M A L E V V R S V G I G G E F I S H E H T Y A H F K E L S K T E L L D R R N R E N W E A A G S K D I V E T S Y A K S I D I L E N Y Q N Q N P L P E D I Q R Q L K E I V L E A E A E T T E I K A K E K E A R R R P R K P K F * |
Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to median/second shortest homolog in length | |
| Desmer_00016150 - Desmer_00016160, Desmer_00016160 | 1697186 | 1697482 | putative pseudogene |
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T C T C C A T A A C T G G T T C A A T T T G A A G T T T A G C C T C C C T A T T G T G G C G G A G A A G G T G G A T G A G A G A C G T G T T A A T C C T A A A A G A G T T C A A A A G T T G A G T A A A A A G C A G G T T T C C A A T A A T G G T G T T G G A A C A A A A G C T C A G C A G G C A C T T A A A C T T C A A C A C G A A G A G G C T A A A C T T G A G C G A C G T C G A A A C A A C A G G G A A A A A T G G A A A G T C G A A G A A C A G A T G A A A T T T A A G C T T C G A C A A A A A A A A A A A A G A A A A G A A A A G C A C A A A G G T A G A T A A
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V A E K V D E R R V N P K R V Q K L S K K Q V S N N G V G T K A Q Q A L K L Q H E E A K L E R R R N N R E K W K V E E Q M K F K L R Q K K K R K E K H K G R * |
Maingene=Desmer_00016160; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo, good start found, extended gene <=100aa, >70% median/second shortest homolog, <80% median/second longest homolog | |
| Desmer_00016580, Desmer_00016590 | 1744424 | 1745896 | putative pseudogene |
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A G G A G T T T C A A A A T T T G A G G G T T T C G G A C T T A A T A T T T T T T C T G A C A A T G A A C T T T A T G A T A T C C A C A G T G G A A C T C T T G A A G T A C T G G A G A A A A C A G G G A T T A A G G T T G A G T C T A A A G A A G C C T T G G A A A T T T T C G C A G C T G G A G G A G C T A G T G T A A A T T T C G A A A C A C G A G T C G T G A A A A T T C C T C C T C A T A T T G T T G A G G A T G C T A T T C G C T C T G C C C C T A A T A C A A T T C T T T T G G C A G G T A G A A A T C C T A A A C A T G A C A T T A T A C T T G G T G G C A A A A G A G T T C A C T T T A T T A A T T T T G G T G A A G G A G T C T C A A T C A T C G A C C C G T A T A C C A A A G A G T A T C G G A A G A C T A C T A A G C A G G A T G T A G C T A A T A T T T C G C G C T T T T G T G A T G C A A T G A G T G A A A T G G A T G C A G T T T T A C G T C C G G T A G C A C C T C A G G A T G T T C C G C C T G T G G C T G C T G T C G T T C A T A A T G C C G A G G T T A T C T T T A A T A A T A C T T C C A A G C A C G T A T T T A T C G G T A C T G A A G G T G G A A A A A A C T T C A G A A A G G T T C T G A A G A T G G C T G C T G C A A T A G T C G G T G G A G A A G A A A A G T T A C G G G A A A G A C C A A T C T T C T C T T G C A A T G T T T G C C C A A C A A G C C C G T T A C A A T T A G T A G G C C A T T G C A C T G A A G T A A T T A T T G A G G G T G C C C G C G C C G G T A T A G C A G T A A A C G T A C T A T C A A T G G C T A T G G C T G G A G C T A C C T C T C C A A T T A C C T T A G C C G G G A G T C T T G T A A C A C A C A A T G C T G A A G T T T T A A G T G G C A T C G T C T T A A G C C A G C T A A C T C G T A A G G G A G C A C C G G T T A T C T A T G G A A G T T C A A C C A C A A T C A T G G A T C T G C G G T T T G C C A C G G C A C C T G T T G G A T C T C C G G A A C T C G G A A T G A T C A A T G C A G G T G T G G C G A A A C T T G C C C A G T T T T A C T T A C T G C C G A G C T G G G T A G C C G G T G G C T A G G T A G A C A G C A A A C T C C C G G A T G C C C A G G C A T C G C A T G A G T T C A C A A T T A C C G C T A T G C T G A C A G C G T T G G C A G G G T C C A A C C T G A T C T A T G G C G C A G G T A T G T T G G A A C T C G G T A T T A C C T A T G A C T A T G C A C A A A T G G T C A T G G A T A A T G A G A T G G C T A G G A T G A T T A A A A A A G C T G T T T G C G G G A T A A G T G T G T C T G A T G A A A C T C T G G C A A T A G A T G T T A T T A A A G A G G T A G G T A C C G C T G G T A A C T T T A T T G G T C A A G A G C A T A C C T T C A A A C A C A T G C G T T C T C A A T C T A A A A G T A A T G T T A T T G A C C G C C G T A T G A G A G A T G T C T G G C T G G C T G A T G G T G G T A A G G A T T T T T C A G A A A G A G C C T A C G A A G T G G C T A G A T C C A T A C T C G A A G A C T A T A A A C C G G A G C A T C T G C C G G A A A A T G T T C A A G C A G A A T T A C G T G C T A T A G T G G A A G A A A C T G A A A A A G A G T A T G G T G T C A A T A G T T A A
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S D N E L Y D I H S G T L E V L E K T G I K V E S K E A L E I F A A G G A S V N F E T R V V K I P P H I V E D A I R S A P N T I L L A G R N P K H D I I L G G K R V H F I N F G E G V S I I D P Y T K E Y R K T T K Q D V A N I S R F C D A M S E M D A V L R P V A P Q D V P P V A A V V H N A E V I F N N T S K H V F I G T E G G K N F R K V L K M A A A I V G G E E K L R E R P I F S C N V C P T S P L Q L V G H C T E V I I E G A R A G I A V N V L S M A M A G A T S P I T L A G S L V T H N A E V L S G I V L S Q L T R K G A P V I Y G S S T T I M D L R F A T A P V G S P E L G M I N A G V A K L A Q F Y L L P S W V A G G * V D S K L P D A Q A S H E F T I T A M L T A L A G S N L I Y G A G M L E L G I T Y D Y A Q M V M D N E M A R M I K K A V C G I S V S D E T L A I D V I K E V G T A G N F I G Q E H T F K H M R S Q S K S N V I D R R M R D V W L A D G G K D F S E R A Y E V A R S I L E D Y K P E H L P E N V Q A E L R A I V E E T E K E Y G V N S * |
Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to median/second shortest homolog in length | |
| Desmer_00016830, Desmer_00016830 - Desmer_00016850 | 1776026 | 1776643 | putative pseudogene |
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C A G A G C T T T G T C T T T G A C G G A T C A G G C G A A C G G G A A G T C G A G A G A G A T G A T T T C T C C A A T C T G G T T A C T A T T T A A T C C T A A G C A T C C T G C T G T G A A A C A T T A T A T T T G G A C G C C T G T A T T G G C G G A A A T T C A A G A C C A G G T A T A T A G G G A A T T G C G T A A T A G G A T A G A T T C T T C T A A A A T T T A T A C G C G G T T T G C T G T T T C C G A C A G T A G G A T A G T T C C G A A C A C A T T G A A T T G G T G G G A T A C T A A A G T G G C C G C A G A G A T A G C C A A T T T T C G A G A G T T T G C T T C A T T G C A C A A G C C G A A A A T C T T A A T A T C T T T T G G T G C C T T T C C C T T T G A A T T T T T A A G A C G A G T C T A T G G A A T G A A A C C T G A G A A A G G C C C A A A G T C T T G G G G A A C A T C A A A T T T A G G G G A C G A A T T T A T A A A A T C A A T T G A G C A C T T C G A T C T C A A T A A A A C A A A T A T T T T T C C T T T A C T T C G C A G A A T T G T C G A A A G T G A T A A G T A T A T T G A T G A T C A T G A T T A T A A C G A T A A A T A T T T T A A A T A C G T T G G G A C A A A T A T T G C C A G G A G A A T T A T C G A G C A T A A G G A T C A A C T A A A T A T T T G G A T G G A T T A A
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R E M I S P I W L L F N P K H P A V K H Y I W T P V L A E I Q D Q V Y R E L R N R I D S S K I Y T R F A V S D S R I V P N T L N W W D T K V A A E I A N F R E F A S L H K P K I L I S F G A F P F E F L R R V Y G M K P E K G P K S W G T S N L G D E F I K S I E H F D L N K T N I F P L L R R I V E S D K Y I D D H D Y N D K Y F K Y V G T N I A R R I I E H K D Q L N I W M D * |
Maingene=Desmer_00016830; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene >100aa and between 70% median/second shortest homolog and 90% median/second longest homolog | |
| Desmer_00017030 - Desmer_00017040, Desmer_00017040 | 1799621 | 1800595 | putative pseudogene |
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G C T A A G T G A A T T A G T T C C C T C T C A G T C T C G A G G A A A G T A C C T G T C T C T A T A T C A T G C C T T T C T T C C C T T G G G A A T T G C C A C T G C C G G T C T C A C T A C C T A T T A C T T G C T T C C G A G C T T T G G T T G G C G G G G T G T C T T C A T T G T T G A A G C T T T A C C A G C T T T G T G G T T C C T G G T T A T T T G G A G A T A C T T G C C T G A G T C A G C A A G G T G G T T A G A G T C C A A G G A A A G A T A T G C T G A A G C T G A T C A A G T T G T T T C T A A T A T G G A A G A A A A A G T T C A T A A A A G T A T C G G T A G A A C C C T T C C T C C T G T A G A C G G T G T G G C T T T A T C C C T C A G T C T A G C A G A A G A A G A A A G T G C T G T T G C C C A A G A A C C G A T A A A A G G C C T G A G C C A A T T A A T G A C T A A G C A T T A C A T G T C C C G G A T A A T A A T G A G T G G C G T T T T G A T G T T T A C T A C G A T G G C C G C C T A T T A T G G A T T G A G T A T G T G G C T A A G T G C T T T A C T G G T A G C A A A G G G C T T T T C G G T T A C T A A G T C C A T A G G T T T C G T T T C G T T A A T T G C G T T A G G A G G G A T T C C A G C T T T T T T A C T G G T A A C C G A T C T T G T G G A A A G A G T C G G C A G A A A G T G G G C T G C T A T T A T A A C A A T T G T A G C C A T G G C T T T C A G T G C A T A T G C C T A C G G A T C G G C G T C A A C A G T T G C C T A T G T C A T T A T A T T A G G C T T A A T A T A T C A G T T T T T T C A G T T T G G C A T G A C A A T G G T T A A T A A T G T C T A T A T T C C C G A A T T G T G G C C T A C A C T C G C A C G A G C T A C C G G A A C A G G T T T T A C G T T T G G G A T T G G G C G T G T A G G A G |