Pseudogenes for contig
| Features | Start | End | Frame Joins | Pseudo Tag | Seq | GenePRIMP Notes |
|---|---|---|---|---|---|---|
| Deiho_00062100, Deiho_00062100 - Deiho_00062110 | 1855 | 4152 | putative pseudogene |
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Maingene=Deiho_00062100; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo, good start found, extended gene >100aa and between 70% median/second shortest homolog and 90% median/second longest homolog | |
| Deiho_00064280 - Deiho_00064290, Deiho_00064290, Deiho | 223425 | 225068 | join (223425..223763, 223765..224451, 224454..225068) | putative pseudogene |
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c g g c g a g t t g c t c g c c a t c t a c g a c t t c c c c t g t g c a a c t g c g g c t g a c c t g c t g t g t g a c a g g c a c c c c g a a g g t g c g g g g g c a c t t a c c g c t g t g g a g t c c g g c a t g a c g g c g c g t g a c c t g a c g t a c g g c g a c c t c c g g c g g g c g t c c g c a c g g t t c g c t g c g g c c c t g g c t g g t c t c g g c g t t g a g c a g g g g g a c a c c g t g g c c g t c c t g a t g g c c a c g t c c a a g g a g c t g g t c g t g g c a c t g c t c g g c a t c c g g c g g c g g g g c g c c g c g c a c g t g c c g c t c t t c a c g g c c t t t g c g c c t c c t g c c c t c g a g a t a g g c t g g a a g c c a g g g g c g c c c g g g c c c g g g t c g t g g t g g c c g g a c c g c g a t c a g g c g g g a a a g c g c t c c g a a g g g a g c g g g c g g c a g g t g a t c a t c a c t g g g g a t g c c c t g g a g c a g g g g c a g a t c g c c t t c c a g g a a c t g c t c g c t g c c g a t a c c g g g a a c g a a c c g g a g g c c g a g g c g g t c g c t a c c g g g g g a a a t g g c c c g g t g g t g c t g c c g t t c a c c t c a g g c a c a a c g g a g a c g c c g a a a g g t g t c c c g g c g c c g c t c c g c a c g c c g g c t t c c t t c c a g g c g t a c c t g g g g t t t g g c c t g g a c g t t t c c t c g g a g g a c g t c t t c c g g a a c g c g g c a g a t c c c g g g t g g g c g t a c g g a c c g t a c g g c g c g g t c c t c g g a c c t c t c g c t g c c g g c g t a c c c a g t c t g t t g c t g c g c g c g g g c t t c t c c c c c g c g c t g a c c t g g c a a g t g a t g g a g c g c t t c g g c g t c a c c c a t t t t g c c g c t g c t c c c a c g g t g t a c c g g g c g g t g t g g g c g g a g c c c a c a c c g c t g a c c g c g g c c a t c c g g t t g c g g c g g g c c t c c t c a g c g g t g g a a c t g c c g g c g c c c g a c g t c a t g g c c t g g g c c a a g c g g a a c c c c g g c g t a a c g g t g c g c g a t c a c g a c g g c c a g a c g g c a c a c g g c a t g g t c a t c g t c a a c g g c t g g g c c g a t g c t c t g g g a g t c c g t c c a g g c t t c a t g g g c c g g c c g c t g c c t g g c t g g t c t g c c g c c a t c c t g g a c g a g g c g t g g g c c a c t g t c c t t t c g c c a g g c c a g g t c g g c c g g g t g g c c a t t g a a g t c g t g g g c a g t c g g c t g c t g t g g t t t a c c a g a t a c g c g g g g g a c c c g g t g a a g a c t g c c g a g c g c t a c a c c g a a g g t g g c g g g t g g c a c g t g a c g g g c g a c g c c g g g a g c g t c g a t a a g g a c g g t g c g t t c t c c t t t t c c t c c c a c g a c g a t g a c g c g g t g a t t a t g g c c g g t t c c c g g a t c g g g c c g t t t g a g g t a a a g c g t g t g c c g g c g a c g c g c c c a c g t g t t a t g g a a g c c g c g g t g a t t g g c g c g c c t g a c g c c c t g c g g g g c g a g g t g c t g g a g g c g t g t g c c g t c c t g a g g g c g a a c g a c c c t g g g a a c g g g g c a c t c g c g g c g g a t t t g c g g c a g t t g g t c a a g c g g c c g t t c g c g g c g c a t g c g t a c c c a g g t g c g g t g c a c t t c a t t g a g g a g c t c c c g a a g a c c c c c a g c g g c a a g g t g c c g c g g t a c g c g g c g c t g c c g c a g c g c c g c g c t g a a g t c g c g c c c c c g c c g c c g g g t g c t c c t t g a
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A A D L L C D R H P E G A G A L T A V E S G M T A R D L T Y G D L R R A S A R F A A A L A G L G V E Q G D T V A V L M A T S K E L V V A L L G I R R R G A A H V P L F T A F A P P A L E I G W K P G A P G P G S W W P D R D Q A G K R S E G S G R Q V I I T G D A L E Q G Q I A F Q E L L A A D T G N E P E A E A V A T G G N G P V V L P F T S G T T E T P K G V P A P L R T P A S F Q A Y L G F G L D V S S E D V F R N A A D P G W A Y G P Y G A V L G P L A A G V P S L L L R A G F S P A L T W Q V M E R F G V T H F A A A P T V Y R A V W A E P T P L T A A I R L R R A S S A V E L P A P D V M A W A K R N P G V T V R D H D G Q T A H G M V I V N G W A D A L G V R P G F M G R P L P G W S A A I L D E A W A T V L S P G Q V G R V A I E V V G S R L L W F T R Y A G D P V K T A E R Y T E G G G W H V T G D A G S V D K D G A F S F S S H D D D A V I M A G S R I G P F E V K R V P A T R P R V M E A A V I G A P D A L R G E V L E A C A V L R A N D P G N G A L A A D L R Q L V K R P F A A H A Y P G A V H F I E E L P K T P S G K V P R Y A A L P Q R R A E V A P P P P G A P * |
Maingene=Deiho_00064300; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Deiho_00062130 - Deiho_00062170, Deiho_00062170 | 8895 | 9977 | putative pseudogene |
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A T C T C C G G G T T G T G G A G C G C C C C A T T C T G C A G G T C C G G G C G C A C G T C G T G A A G C A G A G C A C G C A G A C G T T T G A C C T T G G C G C A G C C A A A G T G T G C C G G G A C A T T C A C G C C T T G C T T C C C T G C A T T C C C G G A C G C T C C A G A C C G G C C C G T A C G A A G C G C C A G G C T A C G G A A C G G G G G C G A A G A G G C C G A G G A A G C T C C G C T C C T G A G A G G A A T T C C C C G A G G G A T T C C C A G A A C C C A C C G G T G T C A C C G T G G A T G G C G C A G C C C T G G G G C A G C C G A A G G T G A A G A A G G G T C A G G C G C C G G T G G G T C G G C C C C A G G A C A A G G C G C G G G T C T G C A G C G T C A A G C A A G G C G C C C G C A C C C T C A A G A C G C A G G A G G C G G T C A C G C C T G A G G G G C A G C T T G T T C A C C C C A G C T C A G G T G C T T A T G G C C G C A C G C A C G G C A T G A A C G T G C T C T G G C A G T T C C G T T G G A T C A A C C C C G C T T G C C C C G G C G T C C G G G T G T G G A G A G A C C G C G G C T A C A T C T G G C C G C A A C G G G T C T G C C C C A A G C G G A A A A C C A C C G T G C C C G T C A A G C G C C T G A A G A A A G G C A A G T T G A G C G G C G A G C A G C C C G A A C G G A A C C C T C T G T T C T T C A C A G T G C A G A T C A T C C C C G A G C A C G C C A T C A A C A G G A T C A A G G C C T T C C G T G C C T G C A A G G C G C G C T T C A G G A A C A A C C C C A A A C C G T A T G G G G T G G T C G G G T G G C C T T C C T C C G G C A G A C C C C C T T G C C G C C T G A C T T C C G G G A G G A G G G G C C G C C G G G T T T C G C C T G A C C G C C C C T C C C T C G A C G G C G C A A T G G G T C T T G A G A A C G C T T C G C G G C C G G A C C T G C A C C C G C G C G C T T C T C C A C C C C G C A G T C A C C G T G C C C G G C C G C C C A G T T G C G C G G C G T G G G T C C C A G G T G T T T G C G G C C T A C G C A T T G G C C T G C A C G T T C A C G G G A G G G G C C G G C G A A A C G G T C A C T G C G C C G A G A A C G T G G A C G A A G T G A T G G C C A C C C G T A C A T C T C T G C G G C T C A G G A C A A A A G C G C C T G C A C G C T C C T C T G G A A C T G G T C G G C A T T G A
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A R R E A E H A D V * P W R S Q S V P G H S R L A S L H S R T L Q T G P Y E A P G Y G T G A K R P R K L R S * E E F P E G F P E P T G V T V D G A A L G Q P K V K K G Q A P V G R P Q D K A R V C S V K Q G A R T L K T Q E A V T P E G Q L V H P S S G A Y G R T H G M N V L W Q F R W I N P A C P G V R V W R D R G Y I W P Q R V C P K R K T T V P V K R L K K G K L S G E Q P E R N P L F F T V Q I I P E H A I N R I K A F R A C K A R F R N N P K P Y G V V G W P S S G R P P C R L T S G R R G R R V S P D R P S L D G A M G L E N A S R P D L H P R A S P P R S H R A R P P S C A A W V P G V C G L R I G L H V H G R G R R N G H C A E N V D E V M A T R T S L R L R T K A P A R S S G T G R H * |
Maingene=Deiho_00062170; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or translational exception, TGA/TAG stop codon, start with Good alignment found, either no good homologs (e-value < e-05) found, or extended gene is comparable to median/second shortest homolo | |
| Deiho_00062240, Deiho_00062240 - Deiho_00062250 | 16609 | 17926 | join (16609..17622, 17621..17926) | putative pseudogene |
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c a c c g g a g c g g a t g a c c t g c a a a c c g c a t c c g c t t g g t c a a c g c g t t g g g g t a g a g c t c c g c t c c g c c a c c g t t t t t c c t g c c g c c a g a t t c g c g c c g t a t c g g g g g c g c c c c g c c c g a a c g c c g g t g t t t t t c c g g c g c c t c t t t t g c g g a a g c c a g g g g a g g a t t g g g a c c t g c c t c c t c c g c g c a g c g g t a a g c c t g g a a c c g g g c t g a t c g c g c a g g t c a a g g g g t g g c g g c c g c g a c g g a c a g a g c a g a t t t t a c c a a t a a c a g t t c t t a t t g g t a a a a a c g c a g c a a g a t g g a g g a g a g g c c a t g a c g c c c a c g c a g t a c a a c g c a g a c c t t c a c c a c c g g a c g t c c g c c t g g c c c a a c c t c c a c c g g c a g t a a a g g c c t g c g c c g a a a a a g a c g c g g c a a c c t t g t g g g a g a t c g t c g a g t g g t a c c t c a c c c a g c a t g c c c a g g c t g g g c t g c t c g t c a g t c c g c a c a c c c g t a t g a g c t a c c g c a c c g g c g t c a g g c a g t t a a c c a c g t t c a t g g c c g a g c a c g c c t g g a c t g t c c t g t c c c c g g a a c g c g a g g a c g t g c a g g g a t a c g t c a a c a g c c t g c t c g c t t c t g g c a a a a g c a t c g c c a c c g t c c a g g c c c g c g c c g c c g c g g g g c g t a c c c t c t a t g c g g c c c t g c g c g a g g t c g a t g c g a c a a a g g c c a t t c c c t t c g a a g g a c t t c g c g t g c c c a a a g a c c g c c g g c a t c c g t t g g a g a a g a a t g c a c c g t a c c c g a g g c g a c g g a t g g a g g a c g t c c t g g a a a a a g c g c g c g a c c a g g t g a g c c g t g a t c c g a a a c g t t c g g c g c g c c a c c t g g a g g t g t g g g c g c t g c t g c t g c t g c t g g c c c a c a c g g g g g t g c g g a t c g a t g a g g c g c t g t t c c t c g g a t g g c g c g a c g t g c a c c t c g g c g a g g a c g a t g c c c g g c t g g t g g t g c g g t c c g g c a a g g g g c g c a a g t c g c g t g a a g t g c c c g t c t c g c c t c g c g c c g c g g c t c t c a c c c g c t t t c g a g c g g t a c c g a g a t c g c g g c g g c a c a c c g g t g a g c a g c t c t t t c c g t a c c g c a c t t g g c g g g g c g c g g c c t a c c a c g t c a a a c c t c t g t t t g a c c g g g a g g a c g g c a g c a a c g a t t t c c g g g g c t t t c a c g c c a t c c g c a a g t t c a t g g g c t c a c g c c t g t a c g a c a c c c t c g g g g a t t t t a c g g c c g t c g c g g a a g t g c t g g g g c a c g c c a g c g t c g a c a c c a c g c g g g g g t a c a t t c g g g t c g g c g t g a a c c g c g c c a a a a g a g c c g t c g c g g a c t g g t g a
V
A
E
R
S
G
I
T
G
A
D
D
L
Q
T
A
S
A
W
S
T R W G R A P L R H R F S C R Q I R A V S G A P R P N A G V F P A P L L R K P G E D W D L P P P R S G K P G T G L I A Q V K G W R P R R T E Q I L P I T V L I G K N A A R W R R G H D A H A V Q R R P S P P D V R L A Q P P P A V K A C A E K D A A T L W E I V E W Y L T Q H A Q A G L L V S P H T R M S Y R T G V R Q L T T F M A E H A W T V L S P E R E D V Q G Y V N S L L A S G K S I A T V Q A R A A A G R T L Y A A L R E V D A T K A I P F E G L R V P K D R R H P L E K N A P Y P R R R M E D V L E K A R D Q V S R D P K R S A R H L E V W A L L L L L A H T G V R I D E A L F L G W R D V H L G E D D A R L V V R S G K G R K S R E V P V S P R A A A L T R F R A V P R S R R H T G E Q L F P Y R T W R G A A Y H V K P L F D R E D G S N D F R G F H A I R K F M G S R L Y D T L G D F T A V A E V L G H A S V D T T R G Y I R V G V N R A K R A V A D W * |
Maingene=Deiho_00062240; Extension FAILED; Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homologPossible false positive, if extended. For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second sh |
| Deiho_00062240 - Deiho_00062250 | 17678 | 17926 | pseudogene, missed gene |
C
A
G
C
T
C
T
T
T
C
C
G
T
A
C
C
G
C
A
C
T T G G C G G G G C G C G G C C T A C C A C G T C A A A C C T C T G T T T G A C C G G G A G G A C G G C A G C A A C G A T T T C C G G G G C T T T C A C G C C A T C C G C A A G T T C A T G G G C T C A C G C C T G T A C G A C A C C C T C G G G G A T T T T A C G G C C G T C G C G G A A G T G C T G G G G C A C G C C A G C G T C G A C A C C A C G C G G G G G T A C A T T C G G G T C G G C G T G A A C C G C G C C A A A A G A G C C G T C G C G G A C T G G T G A
Q
L
F
P
Y
R
T
W
R
G
A
A
Y
H
V
K
P
L
F
D
R E D G S N D F R G F H A I R K F M G S R L Y D T L G D F T A V A E V L G H A S V D T T R G Y I R V G V N R A K R A V A D W * |
Comments=Pseudogene, start/stop is absent | |
| Deiho_00062270, Deiho_00062270 - Deiho_00062280 | 20843 | 21234 | complement (join (20843..21136, 21136..21234)) | putative pseudogene |
A
T
G
G
T
T
G
G
A
G
C
G
C
G
T
T
T
G
A
C
A C G A C G C G C G C A C T T C A A T C T G A A C C G C C A T C T G G T C T T C A C G C C G A G G T A C C G C C G C C G T T C T C C G G C C C T G C C C G T G G A G C G C G T G A C G G A G A T G C C C A G C G C T G G G C G G G A C T G G C T C A T C C G G G G C A C G G A A G T C A T G C G T C A C G C G C A C C T C T T G C T G T C C T G C C C A C C G A A A T G G A C A C C A T C C G A C G T C G A C A C G A C T C T G A A G G G C G T G T C T G C A C G G C T G C T G C A A G A G T T C C C T G A G C G G G A G C G G C G C G G C C C C C T G T G G A C T T C C G C C T G C G A T G T C G G C C C T G C G G G C G A C A T T T C G G C A G A A G G A G T T C A G C G G T A C A T C G A G A A G C A G C G C A A G G G G C A G G T G G A T G A T G G A T C A T A A
M
V
G
A
R
L
T
R
R
A
H
F
N
L
N
R
H
L
V
F
T P R Y R R R S P A L P V E R V T E M P S A G R D W L I R G T E V M R H A H L L L S C P P K W T P S D V D T T L K G V S A R L L Q E F P E R E R R G P L W T S A C D V G P A G D I S A E G V Q R Y I E K Q R K G Q V D D G S * |
Maingene=Deiho_00062270; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Deiho_00062310 - Deiho_00062320 | 24028 | 24382 | complement (join (24028..24117, 24120..24278, 24281..24382)) | pseudogene, missed gene |
C
T
G
G
T
A
C
A
C
C
C
G
G
G
G
A
C
C
A
C
C C T G A A G G T G G G T G C C T C A C C C G A C A A G G T G G T G G C G C T G C C C C T G A G A G G A G G C T G T A G A T G T G A A C A G C A T T G A A A C G A G G T C G A A G T G C A A G A C C T C C T G G C C C G G C A G G T C T T G G A C C T G C C T G A A G T C C A G C G G A A A G G A G T G G T G T T T A T C C G T A A T G A G A T C A C C G G C C A A C C C G G G C G G A C G G G C A A C G C G G C G C C G C A G C G G G G G A C A G C A C G G A T G A T C C G C A G A C C G T A T C A G G T G A C C G A A T A C C A G C C C G A A G G G A A G G C C T G C C C G C C C T G T T A C C G C A G A C A G C A G G C A G C G C T T C C A G G A G A C G T C C G G G G C C A G
L
V
H
P
G
T
T
L
K
V
G
A
S
P
D
K
V
V
A
L
P L R G G C R C E Q H * N E V E V Q D L L A R Q V L D L P E V Q R K G V V F I R N E I T G Q P G R T G N A A P Q R G T A R M I R R P Y Q V T E Y Q P E G K A C P P C Y R R Q Q A A L P G D V R G Q |
Comments=Pseudogene, start/stop is absent. Found common hit with non-adjoining gene: Deiho_00062810 |
| Deiho_00062390 - Deiho_00062400 | 34756 | 35323 | complement (join (34756..34839, 34839..34964, 34963..35103, 35102..35323)) | pseudogene, missed gene |
G
A
C
C
A
G
A
C
C
A
T
C
C
T
C
G
C
G
A
C
C G C C C T C C C A A A C A T C A G C C G T G A T C T C C A C A A C C T C A G C C A C G C C T C A T G G G C G G C C A C C G T C T G A T C G G C T C C G T T C T C C G G A C T C G C C A G C A G C A T G A C C C A A C T G A T C C T C T T C C G C G C C C T A C A A G G C C T T G G G A G C G G G G G A C T C A C C T C A C T G G T C C A G G C C A T C A T C G G T G A C G T C C T C C C A G C G C G C C G G C G C G C A C A A T C T C A G G C C G G C A T C G C C A C C C T C G C G C T C A T C G C C G G G C C G T T T C T C G G G G G C C T G T T C T C C G A C A C G C T T T C C T G G C G C C G G A T C T T C T A C A T C A A T C T C C C C A T T G G C C C C A T C G C C A T G C T G C T G C T G G T C T C T C G C C T C C A G G C T C C A C C T C C C C A G G G C G C A C A C C G C A G C A C G T C C G G A C A T C A C G G G G G G T G T G C T C G T C T C C A T A C C C T G C T G C T C G C C A C C T G G G G A G C C A C C A C C T A C G C G T G G A C T T C C C C C G T C A C G C T G A C G C T C G G C G A G G G C G A G C A C C G C G C C C T C G C C G C C T A C C T T G T G G C C G A A C G C C G C G C G G C C G A A C C G A T C
D
Q
T
I
L
A
T
A
L
P
N
I
S
R
D
L
H
N
L
S
H A S W A A T V * S A P F S G L A S S M T Q L I L F R A L Q G L G S G G L T S L V Q A I I G D V L P A R R R A Q S Q A G I A T L A L I A G P F L G G L F S D T L S W R R I F Y I N L P I G P I A M L L L V S R L Q A P P P Q G A H R S T S G H H G G C A R L H T L L L A T W G A T T Y A W T S P V T L T L G E G E H R A L A A Y L V A E R R A A E P I |
Comments=Pseudogene, start/stop is absent |
| Deiho_00062420 - Deiho_00062450 | 39305 | 39529 | pseudogene, missed gene |
T
G
G
G
C
A
A
C
G
A
A
G
G
T
C
A
A
A
T
G
G C G C T C T A C A C C G T G G C A G T G G G G T G C A G C A A C G G G G C G G G A G T T G A T G A A A C T G G A C G G C C A T A C C G G C T G C A T C T A T G G C C T C G C T C G C A C G C C C G A G G C C C G G G C C C T C C G G A G T G G C C G C T T T G G C A A A A C G G C C C G C C T C T G G G A T C T G G C G G A C A A C A A C A C C G C T C G G C G C C C C C G G G C C T C G C C G C G G T G G A A T T G A
W
A
T
K
V
K
W
R
S
T
P
W
Q
W
G
A
A
T
G
R
E L M K L D G H T G C I Y G L A R T P E A R A L R S G R F G K T A R L W D L A D N N T A R R P R A S P R W N * |
Comments=Pseudogene, start/stop is absent | |
| Deiho_00062500, Deiho_00062500 - Deiho_00062540 | 49928 | 51227 | complement (join (49928..50386, 50388..51227)) | putative pseudogene |
A
T
G
C
C
A
C
G
T
T
C
T
T
T
G
C
C
C
C
C
T T G G A C C C G A C A T T T T C C C A C C T G G T T C G C A C C C T T T C T G A C G C A C T T T C G C C A C C G T G C A G G G C G C A C T T G G G C A C C G T T G T A C G T G C G T G G A C T G T G C A G C G G T G C G T C C C G G A A A A G C A T G C A A C C T C T G G C T G C T G T G G T G G C T C C T G G A A A A G A A G A C C A C C T C C A G C A C T T C A T C A C C G A C A G T C C C T G G C C A A C T C G T C C C C T G G A A A C G C T G C T G G C C G A G C G G G C C C A G C A A A T G C T T G G A G G C A A A G A C G C C G T C T T G A T C A T T G A C G A T A C C T G C C T G A C C A A A T T T G G G A C G A A A T C C G T G G G G G T T G C T C G C C A G T A T T C G G G A C A G G T G G G C A A G A T C A C G T C C T G T C A G T G T C T G G T C T C C C T G A C C T T A G C C C A G C A C G A G G T C C C T G T T C C C C T G G C C C T C C G G C T C T T C C T G C C A C A G G A C T G G A C C A G C G A T C C G G C G C G T C T C C A G G C T G C T G G T G T T C C A A T G G A A C A C C A G C A G C C A C A G A C C A A A T G G G C G T T G G C A C T C C A G G A A C T G G A C C G G G T A C G C G A A C A C G T C A C C T T C G G C A T G G T C T T G G C G G A C G C T G G G T A T G G C G T G A C G G C T C A G T T C C G C C A T G C C C T C A C C A C G C G C G G A C T G C T G T G G T C G G T G G G T G T G A C T C G C A C A C A G A C G G T C T A T C C C A A G G A C G T T C G C T T A A T C C C T A T C C C C A A G T T C T T T C G T G G C A G A A G A C C C A A G C A C C C C A C C C C C T C C G A A G A C C G G C A A T C G G T G G A G G A C G T C C T C A A A G G T G C T G C A T G G C A G C A C C T G G T G T G G C G A C A C G G G A C C A A G G G T C C C C T C T C A G G A C G C T T T G C C G C T G T G T A C G T G C G T C T C G C C G A T G G A G A G G A A A A T G C C C A G G G C C A G C A C C T T C C C G G G C A G G C G G C C T G G A T C A T C G G T G A A C A G C G A C G G G G A G A G G A A C G C A A A T A C T A C G T C T G T A A T C T C C C C G A G A A C A C C T C T C T T T C T C G G C T G G T T G A G G T G A C C A A G C G C C G C T G G G C T T G C G A G T T G A C C C A C C G G G A G C T G A A G G A C G A A G T C G G T C T G G A C C A C T T T G A G G G C C G T T C C T G G C A G G G C C T C C A T C A C C A C G C C G T G C T T T G C A T G C T G G C C C T G A C C T T C C T T C A A T G G T T G C G A T T G A C C C A G C C C G A T G A C C T C A A A G G T G A C A C T G T C C C C G C T A T T C G A G C G G A G G T G G C A G G G G A C C T G C C C C T G C C A C C T C C G T G C C A G C A A T G C C G C G C C T G C A C A G C T T T A T T C A G C G G T C C C T G A
M
P
R
S
L
P
P
W
T
R
H
F
P
T
W
F
A
P
F
L
T H F R H R A G R T W A P L Y V R G L C S G A S R K S M Q P L A A V V A P G K E D H L Q H F I T D S P W P T R P L E T L L A E R A Q Q M L G G K D A V L I I D D T C L T K F G T K S V G V A R Q Y S G Q V G K I T S C Q C L V S L T L A Q H E V P V P L A L R L F L P Q D W T S D P A R L Q A A G V P M E H Q Q P Q T K W A L A L Q E L D R V R E H V T F G M V L A D A G Y G V T A Q F R H A L T T R G L L W S V G V T R T Q T V Y P K D V R L I P I P K F F R G R R P K H P T P S E D R Q S V E D V L K G A A W Q H L V W R H G T K G P L S G R F A A V Y V R L A D G E E N A Q G Q H L P G Q A A W I I G E Q R R G E E R K Y Y V C N L P E N T S L S R L V E V T K R R W A C E L T H R E L K D E V G L D H F E G R S W Q G L H H H A V L C M L A L T F L Q W L R L T Q P D D L K G D T V P A I R A E V A G D L P L P P P C Q Q C R A C T A L F S G P * |
Maingene=Deiho_00062500; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Deiho_00062500 - Deiho_00062540, Deiho_00062540 | 53237 | 55387 | putative pseudogene |
T
T
G
C
G
G
C
G
C
A
G
C
A
G
G
C
T
C
T
G
G G C A C A T C C C A C T T C C C A G A T C C C A G C T G C A G G C G T T G G C C A A A C C C G A A C A A T A C C G G C A G C A G A A G A C C C G G G G A C T C C T T G G T A C C A T T C G C T G G T C A T G A G G C C G C C C C A A A C T T G G A T C C T G C A G T T G C T C G G T A A T C C A G C G T T A C A C C G C C C A G A T G G C C G G C A G C T C C G G T G T G A G G G G A C C A T G C T G G C T T T G C T G G C G T A C C T G G C A G T G G A G G G T C C A A C G C C C C G C G C G C T G C T G G C T T C C C T C C T C T G G C C C A C C T C G T C A G A C A G T G T C G G C A G G A A C A A C T T G G T C C A C C T C C T G C G C C G C A T C G C C T C C A T G T C A C G G T C G C A A C T G A C C G T G A G C A A C G A G G C C G T G G C G C T G A A T C C T G C T G T T T G G A C G G A T G T C G G A G T G C T T A C G G C C G G C G A A G C G C T G T C C G C A T T C C G G C T T G A T G G C G C C T T T C T T G A A A A C G C C G C G T T T A A T G A G T T G C C A G A A T T T G A C G A C T G G G T G C A T C T G C A G C G G G A A C G C T T G C T G C A A C T G G C A C T A C G C A G G C T C A A T G G C C T T C G G G C C C A G G C T G A A C T G G A C G G A G A G C T T G G G C T T G C C C T G G A G T A C G C C G T A C G C C T C T C G G A G C T C G A C A A T T T G A G T G A A G A G A C C C A C C G T C A C C T G A T G A G G C T G C A C T A C C T G A A C G G G G A C A G G G G C G C C G C T C T G T C T G C C T A C C G G T A C T G C A C C A C C G T T T T A C T T C G C G A A C T T G G A G T T C A G C C G A T G C C T G A G A C C G C T C G C C T G G C G G A A G A G A T C G C T C A G G G T G G C C A A G C G G C G C T G T T G C C T T C T C G C A A A C C A A A T G C C A T T C C G C T G A G C A T C C A G C G C C C C C C T G T T T T G G T G G G G C G G G A C C A C A T C T G G A G G C A G A T G G A A C A C G C C C G G G A T C A G G G A C A C G T T A T T T T C C T T G T C G G G G A G G C T G G A A C G G G G A A A T C C A G A C T C G C C G A A G A G T T C G C T G C A A G T C A C G G T A C C T A T C T A C G C G T T G A A G G C C G G C C T G G C G A C G C C C A C G A G C T C T A T G C G T C C G C C C T C C G G C T G C T T C G C C G A C A C C T G G C T C A G C G G C C T T A C G T C C C G C C T A C A G C A T G G G A G C G G C G G G C G C T G G C G C A C C T G C T G C C T G A A T T T G G A C C C G T G C A G G T C G A C T C C T G G A A T A C G C T G C A T T T T C A G C A G G C C A C C T T G A A T C T T G T A C G G G A A A C G A G C C G C G A C G T T C A A A C G T T T A T C A C A G A C G A C C T T C A G T A T T A C G A T C A G G C C T C T T T T G A C C T T G G C G G T T T T A T G C T G G C A T C C G C C T T T C C G C T C G G C C A G C C C G G A G G A T T G C C G C A C T T C G T A G A T A C C T A T C G G A A A G G C G A G C T G C C G C C A G C C A C C G A A C G G G C C A T T C A G G A T C T T G T T G A C G C A A A C C T G G C G A C G A T C A T T G A G G T G C C T C C A C T C G G C G A A G G G G C A G C C G A C G A G T T G A T G G A T A C G T T G G G C G T T C C T C C G C A T C C A G A T T G G C G A C G G C G G C T G T G G C A G C A T T C C G G A G G A A A C C T C G T G T T T C T G T T G G A A A C A A T G A A A T A C C T C A T C G A A T T A G G A G C T T T T G A C A G T G A A C T C C C A G A C C G C C T G C C G C T G C C C G C A A A G G T C C A G C A G A T G A T A A G C G C A C G G G T G A C C C G G C T C T C C G C T C C A G C G T T G C A G G T G G C C C G T G C A G C A G C C G C G C T C C A A C G C G A C T T C A C C G T T G A G A T C G T T G C C G A G G T G C T G C A A G C G C C T C T T C T G G A C G T T G C T G A A C G T T G G G G T G A A C T C G A G C G C G C G C A G A T T A T G T C G G G A G A G C G A T T T A C G C A T G A T T C G G T T G C A C A A A C C A T C T T C T C T G A A A C C C C T G A G T T T G T T C G G A A G T T G C T A C A C C G A A A T G C G G C C C G T T C T C T G G A G C G T C A C C A G G C A A A T C C A G G G C A G A T C G C G T G G C A G T G G C A G G C T G G A G C G A A T G A C A A A C A G G C A G C A G T C T G G T T C G T G C A G G C T G G C G A A T C A G C C C T C C A C G C G C A T C G C C C C T T G G A G G C C A G G G T T T A C T T T G A G C A G G C C C A G C A G G C T T T T G C C C G T T G C G G A G A T G A A A T G G G C A G A G C T C A G T C G T T T A C T G C C T G G A C G C G C C T C G A A G G G G G C T G A
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Q T R T I P A A E D P G T P W Y H S L V M R P P Q T W I L Q L L G N P A L H R P D G R Q L R C E G T M L A L L A Y L A V E G P T P R A L L A S L L W P T S S D S V G R N N L V H L L R R I A S M S R S Q L T V S N E A V A L N P A V W T D V G V L T A G E A L S A F R L D G A F L E N A A F N E L P E F D D W V H L Q R E R L L Q L A L R R L N G L R A Q A E L D G E L G L A L E Y A V R L S E L D N L S E E T H R H L M R L H Y L N G D R G A A L S A Y R Y C T T V L L R E L G V Q P M P E T A R L A E E I A Q G G Q A A L L P S R K P N A I P L S I Q R P P V L V G R D H I W R Q M E H A R D Q G H V I F L V G E A G T G K S R L A E E F A A S H G T Y L R V E G R P G D A H E L Y A S A L R L L R R H L A Q R P Y V P P T A W E R R A L A H L L P E F G P V Q V D S W N T L H F Q Q A T L N L V R E T S R D V Q T F I T D D L Q Y Y D Q A S F D L G G F M L A S A F P L G Q P G G L P H F V D T Y R K G E L P P A T E R A I Q D L V D A N L A T I I E V P P L G E G A A D E L M D T L G V P P H P D W R R R L W Q H S G G N L V F L L E T M K Y L I E L G A F D S E L P D R L P L P A K V Q Q M I S A R V T R L S A P A L Q V A R A A A A L Q R D F T V E I V A E V L Q A P L L D V A E R W G E L E R A Q I M S G E R F T H D S V A Q T I F S E T P E F V R K L L H R N A A R S L E R H Q A N P G Q I A W Q W Q A G A N D K Q A A V W F V Q A G E S A L H A H R P L E A R V Y F E Q A Q Q A F A R C G D E M G R A Q S F T A W T R L E G G * |
Maingene=Deiho_00062540; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo, good start found, extended gene >100aa and between 70% median/second shortest homolog and 90% median/second longest homolog | |
| Deiho_00062540 - Deiho_00062570 | 55565 | 56180 | join (55565..55756, 55758..55892, 55891..56007, 56007..56180) | pseudogene, missed gene |
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g c c t a c t c t a t t t c t t g c c g c g c g g g g c c g g c a c t t g c c c a g c c t t g c g g c g g t c a a a t c g c c c c t g g c c a t g g g t c g t t t c c t c a a c c g c t c c g c c t g c a a c g g a c g t g c t c g g a t t c g g g t g a t g c g g c g t c a t g c c c c c a g c a a t a c a c c c t c c a t c g c c a g c g t g c c c g g g a a g a a g t g c c c g g t c c g g a g a a t g g c c a a c c t c a g t t c c c t g c g c g a g g a a g g c c g t t t t a a a c a c c t g c g g g g a t g g g c g c a c c g c c t g a a c g g c g t c a c c g g c g c g c a a c g t g c c g c t c c c c a g c t g c t t t t c g c g c g c c t g t t t g c c c c a t g g c g t g g c a a a g g c c g g c c c t c a c c c g c c a g a c t g g c g c g c a g g a g c c t g g c a c a g t t t c c a g a g c c a c t g c g c c c c c g c g g a a g g g t g c a g g c t t t c g g c g g a a a a g c c t t c t c t c a a g g g g t g a c g g c c t t g g g c t t t t c a g c c t g c g t c a c c a t t c g g g g c g a c c g a a c a a c c t c t t c g g g a c g t g a c a g c t t c g g c c a a a a c t g t c c a g g c a a t t c c t t t g c c t t g g g c a a g g c c c c a t c c a c c g g g c a t t t t g a g t c g c g g t g a
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S L A A V K S P L A M G R F L N R S A C N G R A R I R V M R R H A P S N T P S I A S V P G K K C P V R R M A N L S S L R E E G R F K H L R G W A H R L N G V T G A Q R A A P Q L L F A R L F A P W R G K G R P S P A R L A R R S L A Q F P E P L R P R G R V Q A F G G K A F S Q G V T A L G F S A C V T I R G D R T T S S G R D S F G Q N C P G N S F A L G K A P S T G H F E S R * |
Comments=Pseudogene, abnormal start as well as frameshift. Found common hit with non-adjoining gene: Deiho_00063310 |
| Deiho_00062540 - Deiho_00062570, Deiho_00062570 | 56963 | 57730 | complement (join (56963..57265, 57265..57474, 57473..57730)) | pseudogene |
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T C C G C A C C A T A C A T C T G A G G A G C T T G A A G T G G C G T A C C G C C A A G C C G A A C G T C C T C T T G A A C G C T C C C G C T G G C A G A T T G T C T G G C T C A A A A G C A A A G G A A A G T C A A T T C C G G A G A T C A T T G A C G C G A C C G G A T T T T C G C G T A C A A C G A T C A G T A C G T T G A T T G C T G C C T A C A A T G C C A G T G G C G A A C A G G C C C T T C T G G A T A A G C G T C A G T T T A A C A A G T C T G A T C C T G C T C T T A A T A T C C A G A C C A G C A A G A G G C A T T T C C A G A G G G A G G C T G A A A C A G G T G G T C T C T G G A C C A G C A A G A A A G T C A A G A T A C A C A T C C A G G A G C A T T T T G G G A T T G A A G T G A C T G A G G T G T G T G C C T G G G G C C A C T T G A A A A G A C T T G G T T T T C C T G T T C A G G T T C C T C G A C C G A C G C A T A C G G A G G C G G C T T C T C C C A A A G A A C A G G G G G C G T T C C A T A A A A A A G T C G G G G C G G C G C T G A G C G T T G C T C A G G C C G C C T A C C C C G A A A A G C A A G T T C G C C T T T G G G T C C A G G A C G A A G G A C G T T T T G G C C T T A C G T C A G G C A A C G T G A G G G G C A G C G G A T G T C G C C A G G C T T T C C G A G C T G C G T G C C C G A G C G G T T G T A A G G C C G T C T C G G C G T T G A G C A G C G G G G A G C C C G C C T C C G G G G A T G G C C T G C C G T G C A G C G G T A G G G G A G C G T G G C G G T T A A G G C C A G C A G G A G G G A G A G G G A A G C G G G A A G G G A T T C G T T T G A T C G T A T A T A T T T T A T G A
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Q A E R P L E R S R W Q I V W L K S K G K S I P E I I D A T G F S R T T I S T L I A A Y N A S G E Q A L L D K R Q F N K S D P A L N I Q T S K R H F Q R E A E T G G L W T S K K V K I H I Q E H F G I E V T E V C A W G H L K R L G F P V Q V P R P T H T E A A S P K E Q G A F H K K V G A A L S V A Q A A Y P E K Q V R L W V Q D E G R F G L T S G N V R G S G C R Q A F R A A C P S G C K A V S A L S S G E P A S G D G L P C S G R G A W R L R P A G G R G K R E G I R L I V Y I L * |
Maingene=Deiho_00062570; Extension SUCCEEDED with start of type START; Comments=Pseudogene, gene with one frameshift, <80% median/second shortest homolog |
| Deiho_00062630, Deiho_00062640 | 62347 | 63361 | join (62347..62793, 62795..63361) | putative pseudogene |
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c g c g g t g g a a c g a c g a c g c a g t c a c c t c c t c g c g t t c c t g g c a g a a g g g a a a a g c g c t g c t g a a g c c c t g a a g c t c a c g g g c t a c t c g t a t c a a g g t g c a g a c a a a a t c a t c g a c g c g t a c c a c c a a c a t g g t c t g g c g g g g c t c a a a g a t c a g c g a c a c c a g a a c a g t g g t g c a c c g a c c c t g c t c a g c g a c g c c g a a g t g c t c c t c c t g g c g c g g a c g a t t c g t g c a g a c a c c g c c a g c g g c g g t g t c t g g a a t g g t g c a c g a g t g c a g t c c t g g g t a a a g c a g g a a t t g g a g a a g g a c g t g c a t c t g a g c c g c t g t t a t g a g t t t t t g g a t g c g g t g g g a t a t a g c c t c c a g g t c c c t c g g c c t c g a c a t g t c g a g g c c a a c c a g g t c a c t c a g g a a g c g t t c c a a a a a a a a t c c t c c a g c c g t g t c c a a g c a g c t a c g g c g c g t a c t g a a g c a a c t g g a c g a g c g g t a g a a g t c t g g t g c a t g g a t g a a c a c c g t g t g g g a t t g a a a c c c c t c g t c g g c a a a c a a t g g t c c g a g c g a g g c a a a g c a c c g a c c g t g c g t g t c c a a c a c c g g t a t g a a t g g c t c t a t a t c a g t g c g t t c g t c t g t c c t c a g a c g g g a g a g a g c c a g t a c t g g t t g t t g c c g a c g g t c a a t a c g g c g g c c t t c c a g g c t g t g c t c g a t c g c t t t g c c c t c g a c a c a c a g g c t g g a a a g a c c c g g g a g a t c a t c t t g g t c t t g g a t g g t g c g g g g t g g c a t g c c a c g c c g c a g t t a a a g t g c c c a c c g g g c a t c g a g c t c g t c t t c t t g c c g c c c t a c t c c c c a g a g t t g c a a c c c g c c g a a c g c c t t t g g t c c c t c a c c g a t g c t c c c t t g a a g a a t c g t c a c t t c g a a a c c c t g g a a g a c c t g a c c g t g t t g c t t g c g g a g c a g t g t c g t c g g t t g g a a c a g c a g a g g g a g a g a a t c c g t t c t c t c a c c t t c t t c c a t t g g t g g c c t t g c a t a a c a a a t t a a
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A E G K S A A E A L K L T G Y S Y Q G A D K I I D A Y H Q H G L A G L K D Q R H Q N S G A P T L L S D A E V L L L A R T I R A D T A S G G V W N G A R V Q S W V K Q E L E K D V H L S R C Y E F L D A V G Y S L Q V P R P R H V E A N Q V T Q E A F Q K K S S S R V Q A A T A R T E A T G R A V E V W C M D E H R V G L K P L V G K Q W S E R G K A P T V R V Q H R Y E W L Y I S A F V C P Q T G E S Q Y W L L P T V N T A A F Q A V L D R F A L D T Q A G K T R E I I L V L D G A G W H A T P Q L K C P P G I E L V F L P P Y S P E L Q P A E R L W S L T D A P L K N R H F E T L E D L T V L L A E Q C R R L E Q Q R E R I R S L T F F H W W P C I T N * |
Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Deiho_00062640 - Deiho_00062660 | 65083 | 65646 | complement (join (65083..65307, 65307..65507, 65509..65646)) | pseudogene, missed gene |
A
C
C
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G G A G G T G C T C C G G C T G G A C G T C A C C T C A G C G G C A G A C A T C G C C G C T G C C C A G C A G T G C G G T G A C G T G A G C T T G C T G A T C T A C A A C G C C G G G A T C T C G G A C G C T C A G G G C C A G C T C C C C T G C G G G A C G A A C G C G C T T G G A C C G C T G C A A C C G A G C C A G A C C T C C G C G C C A G T G C T G G C T G G C C C C G A G C G G G G C G G C G C G G T C C T G A A C G T G C T G T C C G T A C G G A G C T G G G C C C G T G T T C C C G G G G C G G C C C A C A G C A T G T C C A A G G C C G C G G C G T G G C C G C T G A C C A G T G G C C T G C G C C G C A A A C G A C A C G G T C A A G G A A C C C A G G T C A C T G G A C T G C G C C T C G G T T A C A C C G A C G C C C G T A T G T C T C G C G G C G T G G T G G G A G A C A G G G C C G C G C C G C A A T C G G T A G G G C G T C A G G C A C T G C T G G G C C C C G C A G C A G G A C G G C C C G A A G T G C T G G C C G A C G C G G T C T C C C G C C A G G T C C G C G C G G G A C T T T C G G C C A C A C T G G C G G C C T G G T G T G T C A C T T G C C T T G G G C G A G C G G T T T C C T G A
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A A A Q Q C G D V S L L I Y N A G I S D A Q G Q L P C G T N A L G P L Q P S Q T S A P V L A G P E R G G A V L N V L S V R S W A R V P G A A H S M S K A A A W P L T S G L R R K R H G Q G T Q V T G L R L G Y T D A R M S R G V V G D R A A P Q S V G R Q A L L G P A A G R P E V L A D A V S R Q V R A G L S A T L A A W C V T C L G R A V S * |
Comments=Pseudogene, start/stop is absent |
| Deiho_00062660 - Deiho_00062680 | 67071 | 67419 | complement (join (67071..67121, 67121..67249, 67252..67419)) | pseudogene, missed gene |
G
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G
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A
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C
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C A G A C A G T G A A G C C A A C G G G G C A A A G C G C A G G C C G T G T G T G T C C A G C A C C G T G A C G C G T G G C T G T A C G T G T A C G C C T T C G T C C G C C C G C A A A C G G G A G A A A G C C A G G A C T G G T T G T G G C C G A C G G T C A A T A C C G C T G C C T T C C G G A C C T T T G C T C G G G G T A C A C A G G C G G G G A A G G A T C G G G A G A T C G T G T T G G A C G G G A C G G G G C G G C A T G C C A C C C C G C C G T T G A A C T G C C C G T C C G G C A T T T A T C T G G T C T T C C T G C C C C C A G A G T T G C A G C C C C C C G A A C G G C T G T G G T C G T T G A C C G A T G C A C C C C T G A A A A A T C G G C A C T T T
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V
C
V Q H R D A W L Y V Y A F V R P Q T G E S Q D W L W P T V N T A A F R T F A R G T Q A G K D R E I V L D G T G R H A T P P L N C P S G I Y L V F L P P E L Q P P E R L W S L T D A P L K N R H F |
Comments=Pseudogene, start/stop is absent. Found common hit with non-adjoining gene: Deiho_00062570 |
| Deiho_00062700 - Deiho_00062770 | 73947 | 74815 | complement (join (73947..74447, 74450..74815)) | pseudogene, missed gene |
A
T
C
A
A
T
G
A
C
C
A
G
A
A
C
A
C
G
C
T
C T G G G A G G T A T C G G A C G A G C T T T G G G T C C G T C T G G C C C C A G T G C T G G T G A T C A A C A C A C C C A G G A A A A A G A G C G G G C G T C C C T C A A G G G A C G C C C G C T C A A T C T T C A A C G G G C T G A T T T G G T T G G C C C G A A C C G G C A G T C A G T G G A G C G A G T T G C C C C G C C G G T A C G G T C C G A A A T C G A C T G T C C A C G A G C G G T T C T G T G C C T G G G T G G A A C A C G A A T G C C T C C G T G C G G C A T G G G C C C T C G T G C T C G A A G A G T A C G A C C A G G A A C T G G G C A T G G A T T G G G A A T G G C A A G C C G C C G A C G G G A G C A T G G T C A A G G C C A G G G T G G G A A A A A G G G G G C C G C T G G T G C C C G A A G C G A C G G G C A G C A A C C C C A C C G A T C G G G G C A A G G C C G G G T G T A A A C G T A C C C T C C T C A G C G A C G C G A A A G G C A T T C C A C T C T C C G T C G T G C T C T G T G G T G C C A A G C G T C A T G A C A G C A A G A T G C T G A G T G A G G C C C T C G A T G C T G T C G T C G T T G C T G T T C C T G C T C C A G G A G A G C A G G A A C A G C G C C A T C T C C T C C T G G A C C G T G G G T A C G A C A C G C A G G C G T G T C G T C A A C T G G C T C T G G A T G A A G G T C T G C T C G C G C A T A T C C C C A A G A A A T C G A C G G C C G C T C C G C C C A T T C C T G C T C C T G G T G A T C C A C A A C G A C A C C C A C C C C G G C G G T G G G T G G T C G A G G T G G G C C A C A G T T G G T T C A A C C G T T T C C G T C G C A T C C A G A C G C G C T G G G A G A A G C G G C A A G A C C T C T A T C T G G G C T T T G T C G A A T T G A C C G C T T G C C T C A T C A T C T G G C G C A A A C T C G C C C C C A T T G C T C C T C T C A A A A A A T C T T C C G G A T A G
I
N
D
Q
N
T
L
W
E
V
S
D
E
L
W
V
R
L
A
P
V L V I N T P R K K S G R P S R D A R S I F N G L I W L A R T G S Q W S E L P R R Y G P K S T V H E R F C A W V E H E C L R A A W A L V L E E Y D Q E L G M D W E W Q A A D G S M V K A R V G K R G P L V P E A T G S N P T D R G K A G C K R T L L S D A K G I P L S V V L C G A K R H D S K M L S E A L D A V V V A V P A P G E Q E Q R H L L L D R G Y D T Q A C R Q L A L D E G L L A H I P K K S T A A P P I P A P G D P Q R H P P R R W V V E V G H S W F N R F R R I Q T R W E K R Q D L Y L G F V E L T A C L I I W R K L A P I A P L K K S S G * |
Comments=Pseudogene, abnormal start as well as frameshift |
| Deiho_00062770 - Deiho_00062810, Deiho_00062810, Deiho | 82203 | 83592 | complement (join (82203..82454, 82453..82911, 82913..83356, 83358..83396, 83398..83592)) | pseudogene |
A
T
T
G
A
A
A
G
C
G
C
A
G
G
T
C
G
C
G
C
G G A C C A G C G A G A C G A C G C G T C A G C C C C C A G C C A G G A C C A G G C C T G G A A G A A G A A G C C C A A G A G C G A A C G C C C C T A G G G C G T T C G C T C T T C T G G T G G T C A A G T G G G A C A C C C A G G C A C C A C C T T G A A G A T G C G C C C T T C T C C C G A C G A G G T G G T C G T G C T G C C C C T C A C G G G A A G C T G T A C G T G T G G A C A G C A A T G G A A T G A G G T C G A A A G T G T A G A C C T C C T G G C T C G G C A G G T C T T G G A C C T A C C G G A G G T C C A G T T G C A A G T G A C T G A G T A C C G G G C C G A A G T G A A G G T G T G C C C C C G C T G T C A C C A C C G A C A A C A G G A G G C G T T C C C A C G G G A C G T G C G C G G T C A G G T G C A G T A C G G C C C T C G C T T C C A G G G C C T G G C G G T G T A C C A G G G T G T C G C T C A A T T C C T G C C G T T C A A A C A G G T T G G A G A C G T G C T T G A A A C G C T G T G C G G T C A G C G C C C C A G T G A A G G A A C A C T C G C G C C G C A C C T C A A C C T C G C C A C A G C G C G A C T C A C T G G G T T T G A G G T C A G C C T G A A A G A A G C C C T G C T C G A A G C A C C C G T C C T G C A T G T G G A C G A G A C G G A C A G C A A G G T A A A A G G C A A G C T C G C C T G G G T G C A C G T C A T C A G C A G C A A A C A G C T C A C C C C C T A T G G G C A C G A C C C G C A C C G T G G C C C G G C C G C C A T C C A G G C T T T G G G G G T T C T G C C G C G G T A C C C C G G C G T G T T G A C G C A C G A T G T C T G G C C C T C G T A C T T C C A C C T C T G C G C C C G G C A T A C G C T G T G T A A C G C C C A C C T G C T T C G G G A G T T G C G C T T C C T C C A C G A A C A G T T G T A C C A A G A C T G G G T G G G A G A A C T G C G A G C C G C A C T G C A A G G C G T C T A C C A T C A A C A C G G G G C A G G T A C C C T C A C T C C A C C G G A G A A A G C C G C G T T C C T G G T T C G C T T T G A T G C A C C C C T G G A A G C G G G A C T G G A G A C C A A C C C C G C A G C A G A G C C G G T T C C A A A G C A G C G G G G A C G G G T G A A G C A G T C C C C T G G G C G T A G C C T T G C C C C T C A A T G T C A G A A A C A C T G A G A C A A G G T G T T A C G C T T C C T C C A A G A G G A G G G C G T C C C G T T C G A C A A C A A T C A A G C C G A G C G A G A C A T C C G G A T G G T G T G T G T G A A G C G C A A G A T C G C C G G T G G G T T T C G T T C C G A T G G G G G T G G A A A G A A T T C C T A C C G C A T T C G G A A C T A C C T C T C T A C G C T C C A G A A G C A G G G C C T C T C T G A C T A C A A A G G A T T G G T C A G T A T C T T C A C A A C C A G C T C C T T C T T T C T C A C C C C T T G T T C T C A T G C T A A A C T G C T G C G A G T A C G C C G C A G C A G T C G T T A T T A T C G T T C T T G T C C T C T T T G G T A T T T G G G T A C T C C G G G G G T G C A C T A A
I
E
S
A
G
R
A
D
Q
R
D
D
A
S
A
P
S
Q
D
Q
A W K K K P K S E R P * G V R S S G G Q V G H P G T T L K M R P S P D E V V V L P L T G S C T C G Q Q W N E V E S V D L L A R Q V L D L P E V Q L Q V T E Y R A E V K V C P R C H H R Q Q E A F P R D V R G Q V Q Y G P R F Q G L A V Y Q G V A Q F L P F K Q V G D V L E T L C G Q R P S E G T L A P H L N L A T A R L T G F E V S L K E A L L E A P V L H V D E T D S K V K G K L A W V H V I S S K Q L T P Y G H D P H R G P A A I Q A L G V L P R Y P G V L T H D V W P S Y F H L C A R H T L C N A H L L R E L R F L H E Q L Y Q D W V G E L R A A L Q G V Y H Q H G A G T L T P P E K A A F L V R F D A P L E A G L E T N P A A E P V P K Q R G R V K Q S P G R S L A P Q C Q K H * D K V L R F L Q E E G V P F D N N Q A E R D I R M V C V K R K I A G G F R S D G G G K N S Y R I R N Y L S T L Q K Q G L S D Y K G L V S I F T T S S F F L T P C S H A K L L R V R R S S R Y Y R S C P L W Y L G T P G V H * |
Maingene=Deiho_00062810; Extension SUCCEEDED with start of type NONCANSTART; Comments=Pseudogene, frameshift/stopcodon as well as non-canonical start codon |
| Deiho_00062810 - Deiho_00062830, Deiho_00062830 | 83692 | 83988 | pseudogene |
G
T
G
C
G
T
G
C
C
A
G
C
A
C
G
T
G
C
T
G
C A C T T C G A C C T G T T C C G T C A A G T T C G G C A A G T G G T T T G A G G G C G T G G A C C A G A A G C T G G C C G C A G C G C C G C A A C G T G G T C G C G G G A A G C C G A A A C T C A C G G T G G A G A A T C T T G A G G G G G A C G T C A C C G A C T T C A A G G C C C T C G C G G A A G A A A C C C G C T G C A A G C T C C A G A A C A G T G A T G G G A A G G G C C A G A A C C T C G G C A A C A G C C G G A A G C G C A A A G C C G C C G C C G C A A A A C C A G C G G C C A G G C C C A A G C G C A T C G C C A A G A A A C G T G A C C G G T G A
V
R
A
S
T
C
C
T
S
T
C
S
V
K
F
G
K
W
F
E
G V D Q K L A A A P Q R G R G K P K L T V E N L E G D V T D F K A L A E E T R C K L Q N S D G K G Q N L G N S R K R K A A A A K P A A R P K R I A K K R D R * |
Maingene=Deiho_00062830; Extension SUCCEEDED with start of type NOSTART; Comments=Pseudogene, failed extension, extended gene <=100aa and <70% median/second shortest homolog | |
| Deiho_00063020, Deiho_00063020 - Deiho_00063030 | -1 | 103578 | pseudogene |
C
T
|
Maingene=Deiho_00063020; Extension SUCCEEDED with start of type NOSTART; Comments=Pseudogene, failed extension, extended gene <=100aa and <70% median/second shortest homolog | |
| Deiho_00063030 - Deiho_00063070, Deiho_00063070 | 107925 | 108377 | putative pseudogene |
G
T
G
A
C
G
C
T
T
C
C
T
C
A
C
C
G
C
C
A
G T G C G C A G C A T C C T T G A T T T T C A A C G A G G A G G G G C A G G T T C T T C T G G T T C G C C A G A A C T A T G G T G C C T A T C G C T G G G G T G C G C C T G G C G G C A T A G T G G A T C C T G G A G A A A C G C C T A T G C A G G C A G C G C G G C G C G A A G C T G T G G A A G A G A C G G G A G T C C A G A T T A A G A T T C T A C G G C T C G T T G G T C T G T A C T T G C T A C A A G G A G G T G G A T G G C C G G A C A T T C T C G C C C A T G T G T T C G A A G C G C A A A T T G T T G A G G G A C A A C C T A T C A T C G T G A A T C C A G A A G A A A T A G C C G A G T G C G C C T G G T A C T C T G C A G A T G C C A C A C C T G A G G A C A T G G T G C A T G A C A T A G A G G C T G C T T T G G A A G A C G T T C A A G C G G G A C G T C A T G G C G T A G T T C G A A C G G T C C T G A G G A A A C G T G A G A T G A A A G C A T T C A C C C T A T A A
V
T
L
P
H
R
Q
C
A
A
S
L
I
F
N
E
E
G
Q
V
L L V R Q N Y G A Y R W G A P G G I V D P G E T P M Q A A R R E A V E E T G V Q I K I L R L V G L Y L L Q G G G W P D I L A H V F E A Q I V E G Q P I I V N P E E I A E C A W Y S A D A T P E D M V H D I E A A L E D V Q A G R H G V V R T V L R K R E M K A F T L * |
Maingene=Deiho_00063070; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo, good start found, extended gene >100aa and between 70% median/second shortest homolog and 90% median/second longest homolog | |
| Deiho_00063070 - Deiho_00063090 | 108761 | 108916 | pseudogene, missed gene |
G
T
G
C
C
G
T
A
T
A
G
A
A
A
G
G
G
C
G
T
C C T C G G T T C A G T G T C C G C T T C A T T C G G C G T G G C G G A A T A T C C C A C C A A T G G T G C A A C C C C T G C A G A A G T C A T T C A C G C G G C C G A T A T C G C G T T G T A C C G T G C C A A G A A G A A T G G C C G G A A C C A A G T T T A T T C G T A A
V
P
Y
R
K
G
V
L
G
S
V
S
A
S
F
G
V
A
E
Y
P T N G A T P A E V I H A A D I A L Y R A K K N G R N Q V Y S * |
Comments=Pseudogene, good start found, extended gene <=100aa and <70% median/second shortest homolog. Found common hit with non-adjoining gene: Deiho_00063540 | |
| Deiho_00063140 - Deiho_00063150 | 116924 | 117305 | complement (join (116924..117019, 117021..117305)) | pseudogene, missed gene |
C
T
G
T
T
C
G
G
G
C
G
T
T
A
C
C
G
C
C
G
T A C C C T G C T G G A G C T G G G C A C G A A G G G C T C A C C G C T T G T T C G G C A G A T C T A C G C G G A C G C C A G C A G C T T C A T C C G C A A G C T T G T G A C G A T C C G C A A G T C C G T G A C G G A C A T C C G T G C T C T G G A C T G G T A C A G C G C C C G C G A G G A A G G C T G C G G G G A C C T G T A T A A A G G T C T A C T C G C G A A G A A C G C C G A C G A G A A G A A G A G C G G C G C A G G C C A G T A C T T C A C G C C C A G G C C C C C G A C C G A C G C G A T T G T C G C G T C G A T G A A G C C G C G G G C G G G C G A G G A C C G C A T T C A G G A C C C C G C T G C A G G G A C G G G C A G T T T C C T C A T T G C C G C G C A C C C C T A C T G G C C T A C T C G G A A G A T G T T T T A A
L
F
G
R
Y
R
R
T
L
L
E
L
G
T
K
G
S
P
L
V
R Q I Y A D A S S F I R K L V T I R K S V T D I R A L D W Y S A R E E G C G D L Y K G L L A K N A D E K K S G A G Q Y F T P R P P T D A I V A S M K P R A G E D R I Q D P A A G T G S F L I A A H P Y W P T R K M F * |
Comments=Pseudogene, abnormal start as well as frameshift |
| Deiho_00063180, Deiho_00063180 - Deiho_00063190 | 118565 | 118807 | pseudogene |
G
T
G
C
T
G
G
A
G
C
T
G
G
A
G
G
G
C
C
A
C A A C A T T A G A G A T A C C G A A T A C T G G C T C G A C G T T G A G T T C G T C G A A C C C T G C C C A G A G G G A G G A G T G G C G G G A C G C T T G C A C C A G G A C G A A A T C T G C A T G C C T T C T T G C C C T G C G G T G G T C G C G G C G T A C G G C T G G G A G T G G C C G C T C T C C G A G G A C G A G G T G C T C G C G C G A C T G C A G G C A A T C A A T C T G G A G C G T G C A G A T C A G C C C T T A G C G G C C A C A T A A
V
L
E
L
E
G
H
N
I
R
D
T
E
Y
W
L
D
V
E
F
V E P C P E G G V A G R L H Q D E I C M P S C P A V V A A Y G W E W P L S E D E V L A R L Q A I N L E R A D Q P L A A T * |
Maingene=Deiho_00063180; Extension FAILED; Comments=Pseudogene, failed extension, extended gene <=100aa and <70% median/second shortest homolog | |
| Deiho_00063390 - Deiho_00063400 | 137401 | 138153 | join (137401..137469, 137471..137641, 137640..137687, 137687..138013, 138013..138153) | pseudogene, missed gene |
g
g
c
c
c
a
g
g
t
c
a
c
t
t
c
a
a
g
c
g
a g t a g g g t g g t g c g c c g t g a g c g a t c t g g a g c t g t a c c g t c a a c g t t t c c c a g g g c c t c a t t g a a t c t g g c a c c a c c g c t t c c c c c t c a t c c g g c g a g a c g t c c t g g a g g t g c g g t a c g g g c g t g g g a g c a c c g t c a g t c c c g a g a c c c t g g g g c a g a g g a a c a t c a t g t t c g c t c c c t t g c c c a c t g a g g t a c t c c g c t a c c a a a a a g t c t g a c g g g g t g t c t g c g t g a a g g t g g g g g g a g t g a a g c a c t g g c t g t a g a g g g c a a a g g a c g g g t g c a g c a c c g t g c c c g a c a t c c c g c t t c a g c c t c a c c g g g a t a c g g a g g c g g c c c g g a c c c t c t t c a c c c c g c t g c c c g g c g a g t a c a a g g t t c c c g a g t g c a t g c c c a c c g g c a g g t g c t g g a g t t c c g g c g c a g c a a t t c g g a a a c t c a c t g t g c t c c a a g a t c t g g a g c a c g t c c a g g g c a c c t c c t g t g c a c g g c a t g a c a a c c t g a c c g a a c c a c t g c a t c g t c c c a c c c g g c a g c g g c c a c g c c t g g a c t t c a a a c g g c g a t g a c g a a c c g a g g a a t t c c c c g c c c c g t a t g c c c g a a t c t c c a c g t t t c a c t c a a c c c g a a c c a c c g t g c c t g c c g c t c t c c g a c a g c g t c a c c t g c g c a g c g c c c t t c g t g t g a g g c g t g a g g g g g g g g c t g c g g g t g a c c t g a a c t t c g a c t g c a g g c c a c t c g c c c g t g g g t a t g a g c t t c t t c a g g g g t g a
G
P
G
H
F
K
R
V
G
W
C
A
V
S
D
L
E
L
Y
R
Q R F P G P H * I W H H R F P L I R R D V L E V R Y G R G S T V S P E T L G Q R N I M F A P L P T E V L R Y Q K V * R G V C V K V G G V K H W L * R A K D G C S T V P D I P L Q P H R D T E A A R T L F T P L P G E Y K V P E C M P T G R C W S S G A A I R K L T V L Q D L E H V Q G T S C A R H D N L T E P L H R P T R Q R P R L D F K R R * R T E E F P A P Y A R I S T F H S T R T T V P A A L R Q R H L R S A L R V R R E G G A A G D L N F D C R P L A R G Y E L L Q G * |
Comments=Pseudogene, start/stop is absent |
| Deiho_00063470, Deiho_00063480 | 145568 | 147265 | pseudogene |
A
T
T
C
C
G
A
G
C
C
G
C
T
C
T
C
C
C
C
T
G A T G C C C T G C A C A C C A A A A C G G G C C A G G A C G C T C C T C G A A G C C G G A A G A G C C G C T G T G T T C A G A C G C G C C C C T T T C A C C A T C A T C C T C A A A G C C G A A A C G G G A C G C G T C T C C C A A C C T C T G G C C C T G A A G A T T G A T C C T G G A A G C A A G A C C A C C G G T C T T G C A T T G G T C C T C A A A G G C A A G A C T G G C A A A C A A T G C A T C T G G G G T A C C G A A C T G G C C C A C C G C C G C C C C G C C A T C A A A C C A A A A C T C C A G G C C A G A A G G A G T C T C C G G G C C T C C C G G C G C A A C C G C A C A C T C C G G C A C C G A C C C G C G C G C T T C C T G A A C C G C A C C A G G C C C A C C G G T T G G C T G C C A C C T T C G T T G A T G C A C C G C G T T C T C A C C A C C G T T T C C T G G G C A A G A C G A C T G G A C C G C T T C A C T T C C C T G G A T T C A T T C A G C A T A G A A C T G G T C T C C T T C G A C A C C C A G A A G C T G A T G A A C C C G G A C A T C C A G G G A C A G G C C T A C C A G A A A G G C A C C C T G T T C G G C A C C G A G C T C C G C G C G T A C C T C C T G C A T C T A T G G G A C G G A A A G T G C G C G T A C T G C G A G A A G A A A G G C G A G G A A G T C G A G C A C C T T G T T C C C C G C A G C C G G G C A G G C A G T G A C C G C A T C A G C A A C C T G G T C C T C T C C T G C C G C A A G T G C A A T G A A C T C A A A G G C A A G C G C A C C C T C G A A G A A T T C C T G A C A A A G A A A C T G A C C C T G C T C A A A C G C A T T C G G G A A C A A C A G C A G G T C A G C C T C T A A G A T T G C G C A G C C G T A A A C G C C A C C A A G T A T C G C T T A C T G G A G G A A C T G C G C C G C T T C G G C T A T C C G G T C G A A A C C G G T T C A G G A G C A C A G A C C C A G T T C A A T C G C T G G A A G C A G G G C T A C G A C A A A G C C C A C T G G A T C G A C G C G G C C T G C A T T G G A G A C T C T G G G G A G A G G G T C C G G C G C A G C G C C C T G A A G C C T C T C C T G A T C A A A T G C A T G G G G C G G G G A G C C A G A C A G A T G T G C G G C A C C A A C A A C T C C G G G T T C C C G A T T C G T T A C C G C A C C C G G C A A A A G G T T T T C T T C G G C T T C C A G A C G G A A G A C A T C G T G C G G G G T G A G G T G A A A A G C G G G A A G T A T G C G G G A A G G C C T A C T G G A C G A A T T G C G G T T C G G G C A C G A C C G A A C T T T A G A C T C G G G A G C T T C G A T G T C G C G G C A A A G G A C C T C A C C G C C T T A C A A C G G G C A G A T G G C T C C A G C T T C T C G C A G C G C C G A T G G C G C T G G A C T C C A T T C A C C C C C A G G C G T A A A C G C C G G G G C A C C C T C G A G C C G C T C C G G T G G T T T T T T C A G G G A C T C A C C G G A A T C C C T A A T C C G T G G C T G T G G A C A T C C G G A C G C A A C G A G G C C C C T T G G T C T C C G T T C C T G G T T C C G A G C T C T C A C C A C C T C A T A G C A G C C A G C A C C C A G G C G T G T G A T C T C C G C A T C G T C C T T G G T C T C C T C G T T C C A C T G A C C G C C A T T C G C C A T A A A G C G G T G C C C G T A T G G G G C A C A C C A G G C A T C G G G G C G G A G A T C A T C A G G A T C T T C G G A A C T G G C A A A A C G C C C T G T A C A A C G T G T C G G C A A A C A A G G G T G A C A A A G C T G C G G C C A T G T T C T T T G C A T T C C A G C G T G A G C G G C C G A T C G C T C A T C C C C C C C G T T C A G C G A A C G G C G G G G G G C G G C T G G C C A C A A A A C T G C G C C G C A T G A
I
P
S
R
S
P
L
M
P
C
T
P
K
R
A
R
T
L
L
E
A G R A A V F R R A P F T I I L K A E T G R V S Q P L A L K I D P G S K T T G L A L V L K G K T G K Q C I W G T E L A H R R P A I K P K L Q A R R S L R A S R R N R T L R H R P A R F L N R T R P T G W L P P S L M H R V L T T V S W A R R L D R F T S L D S F S I E L V S F D T Q K L M N P D I Q G Q A Y Q K G T L F G T E L R A Y L L H L W D G K C A Y C E K K G E E V E H L V P R S R A G S D R I S N L V L S C R K C N E L K G K R T L E E F L T K K L T L L K R I R E Q Q Q V S L * D C A A V N A T K Y R L L E E L R R F G Y P V E T G S G A Q T Q F N R W K Q G Y D K A H W I D A A C I G D S G E R V R R S A L K P L L I K C M G R G A R Q M C G T N N S G F P I R Y R T R Q K V F F G F Q T E D I V R G E V K S G K Y A G R P T G R I A V R A R P N F R L G S F D V A A K D L T A L Q R A D G S S F S Q R R W R W T P F T P R R K R R G T L E P L R W F F Q G L T G I P N P W L W T S G R N E A P W S P F L V P S S H H L I A A S T Q A C D L R I V L G L L V P L T A I R H K A V P V W G T P G I G A E I I R I F G T G K T P C T T C R Q T R V T K L R P C S L H S S V S G R S L I P P V Q R T A G G G W P Q N C A A * |
Comments=Pseudogene, TAA stop codon seen in alignment | |
| Deiho_00063480 - Deiho_00063510, Deiho_00063510 | 149030 | 149242 | pseudogene |
A
T
G
C
G
C
G
A
A
A
C
G
C
C
C
A
C
G
A
A
C G T G G A G C G C G G C G T T G C C A G C G C T G T G C G T G A G G G G A G C A A G C C G C C G T C C T C T T T C T C G A C C T T G G T G G A G G T C A A A G C A G C C C A T G A C C C C C T C G T G C A C G C T G C T G G A G A C G A G C T G C G C G G T G A G G T G G C C G C T C G C C T G C A A G G C T G T G C G C G C C A G G C G A G G C A A C G T G T A C A G G C C C T A C G T T G A
M
R
E
T
P
T
N
V
E
R
G
V
A
S
A
V
R
E
G
S
K P P S S F S T L V E V K A A H D P L V H A A G D E L R G E V A A R L Q G C A R Q A R Q R V Q A L R * |
Maingene=Deiho_00063510; Extension FAILED; Comments=Pseudogene, failed extension, extended gene <=100aa and <70% median/second shortest homolog | |
| Deiho_00063600, Deiho_00063600 - Deiho_00063620 | 159552 | 159839 | putative pseudogene |
A
T
G
G
G
C
A
A
G
C
A
A
C
G
G
A
A
A
A
C
T T G G G C A A C G G A C A C G A A A G A G C A G A T T G T T C T G G C C G T C C T C G G C G G G C A A C T C A G C G T T G C T G A G G C G G C A C G A C A G C A T G G T G T C A A C G A G A G C C T G A T C C A T A C C T G G A A G G C C C A G T T C C T G G A G G C A G G C C G T G C C C G C C T C G C C G G A G A T C G T C A G G G C G A C C G G C A G A C C G A G C T G G A A C G C G A G A A C G A A C G C C T C A A G G T G T T G G T C G G C G A G A A G G A A T T G G C C T T G C A G A T C G C A A A A A A A G T G C G G G G T C T C T G A
M
G
K
Q
R
K
T
W
A
T
D
T
K
E
Q
I
V
L
A
V
L G G Q L S V A E A A R Q H G V N E S L I H T W K A Q F L E A G R A R L A G D R Q G D R Q T E L E R E N E R L K V L V G E K E L A L Q I A K K V R G L * |
Maingene=Deiho_00063600; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene <=100aa, >70% median/second shortest homolog, <80% median/second longest homolog | |
| Deiho_00063600 - Deiho_00063620, Deiho_00063620, Deiho | 159860 | 160726 | putative pseudogene |
T
T
G
T
A
C
G
A
G
G
G
G
T
T
T
C
G
C
A
G
A G A C C A T C C G C A C C T C A G C C T G T C C T G C T T C G C A C G C G A A G C A G A C G T T C C T G C C T G G A A A T T A C G G G A T G C C C G A C A A C A C G C C G C A C A G C A A G C T C G G C G A G A A A A G A G G G A G C A G G C C C G G C T G G A A C G C A T T C G A G A G G T T G C G T T G C A G C A C C C G A C G T A C G G C G A T C G G C G A C T T C A C C A G G T C C T G G C G A C A A C A C C A G C C C A G G A G C A G G C T G C T C C T G G G C A C G T G G G C C T G C A T A C C A T T C G G C T T G C T C T T G C C G A G T T A G A T C T T C A G C C A C C C T T A C C T C G C A A A A C C C G G A A G A A G G C T C T C C C A G C C G T C A A T G A G A C C T T G T G G C C T G C G G G T C G C C G G G T T C G G G T T G A C G C C A C G C G C T T C C G T C T G G G G G A T G G G G T C T G C T G G G C G T A T C T G G T C C T G G A T G T G G A G A C G C G G T G C C T G C T G C A T C T C C A C G T C C T C C G C A G C C T T T C T G C G A G C G G C G C G G T C T T G G C G C T G C A G G C G G G T C T A C A G G T C C T T C G C G A C C T C G G C A T T C A G G A G G A C G T G C T G G T C A T G A C A G A C G G T G G C T C G G A T T T C A C C T C A G C G G C C T T C C A G G A C G C C T G T G G G C A G G T C G G C C A C T G G A C C C G G A C G A A G G T C T C G C A G A A A G G A G G A A T G G G C A T C C T G G A A A G A A C C A A T C G C A C C C T A A A G T A C G A G T T C G T C T T C C G C G A G G A A T T C G G T T C C A T G C A G C A A T T G C G C C A C G G A A C C G A A C G G T T C C G T G A C T G G T A C A A C C A G G T T C G G C T C C A C T C A G C C T T G G G C T A T G C C T G C C C C T G G G C T A A G C T G C T C G A A G C G G C A A A G G C C C A C A A C G C C G C T T G A
L
Y
E
G
F
R
R
D
H
P
H
L
S
L
S
C
F
A
R
E
A D V P A W K L R D A R Q H A A Q Q A R R E K R E Q A R L E R I R E V A L Q H P T Y G D R R L H Q V L A T T P A Q E Q A A P G H V G L H T I R L A L A E L D L Q P P L P R K T R K K A L P A V N E T L W P A G R R V R V D A T R F R L G D G V C W A Y L V L D V E T R C L L H L H V L R S L S A S G A V L A L Q A G L Q V L R D L G I Q E D V L V M T D G G S D F T S A A F Q D A C G Q V G H W T R T K V S Q K G G M G I L E R T N R T L K Y E F V F R E E F G S M Q Q L R H G T E R F R D W Y N Q V R L H S A L G Y A C P W A K L L E A A K A H N A A * |
Maingene=Deiho_00063620; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo, good start found, extended gene >100aa and between 70% median/second shortest homolog and 90% median/second longest homolog | |
| Deiho_00063620 - Deiho_00063630 | 160843 | 161022 | pseudogene, missed gene |
A
T
G
T
G
C
T
C
C
T
G
G
T
G
G
A
G
C
C
G
C C G G G A G A C C A G C G G G T C C G T T C A C T C C A G T C C T C C C G T A T C G G A A G C A A C G C C C C T C A A G T G T C C C G C C C C C A C G G C G G A T A G G G A C C G A A C T G C T C C A C G A C G T T C T G A A C C C A G C G C G G C G C T T T G G C G C A T C T G T C A A A A A G T G G A G T T T T T T T G A
M
C
S
W
W
S
R
R
E
T
S
G
S
V
H
S
S
P
P
V
S E A T P L K C P A P T A D R D R T A P R R S E P S A A L W R I C Q K V E F F * |
Comments=Pseudogene, good start found, extended gene <=100aa and <70% median/second shortest homolog | |
| Deiho_00063740 - Deiho_00063760 | 174259 | 175040 | join (174259..174471, 174471..174596, 174599..174679, 174682..174810, 174809..174877, 174879..175040) | pseudogene, missed gene |
g
g
c
a
a
a
c
g
g
g
a
c
g
c
g
g
c
c
a
c
c a g c c c c c g c a c c c t g a a g g c c t a c a a g t g g g t c a c g g c g a a a t t g c t g g g g t a c a g c t c t a t a c a g a c t g t a a a t c t g c t g c t c g c c a g c a c a g g g a c a g c g t c c g t t t t c g a c g c a c g g t c a a a a c t g c g g a c c g g a c a a g g a t g c c g g c g a g t c c a t t g t a a a c c g a g g g g c c c a c c c a g g c g g a g c g g g g c g g g a a a a a c g g t g a c c c a g c g g c g c g c a a t t g c c g g a g c g g a t g g t c c c g c a a a g c a c a t g a g g g a c a a c a c t g c g g c g t g g g a t a a g c g g t c t c c c c c c a g t g a c g c t g a a g t t c a c c a g t t g t g g g g a g c c g c c g a g c c t c g g a t g c g c g c c c t c g t c c t g c t g t g c g c g c a c a g g c g a c g t c g c a t c a g c g c a g c g t t g g c g g a t g a a g t g a g c t t g g a a a c g a g g g a c t c g c t c g t c a a g t a c g g c a a a g g t g g c a a a c a g a g a a g g g g c g t g t t c g g a g a a a c c c t c a g c a c c g c t g c t c a t t g t a a a g a a a g g a g g g c t g g c g a t g g g g g g a g c a g t t c c c c a g c c g c a g t c g a a c g c t t g c a a c g g c t c t g t a c c c c g g c a a a c c t t t c c t a t a a a g t c c a t c a c g c c c t t c g g c g c a c t g c a g g c a c c c g t t t g a t g c g g g a a g g g g c c t c c c t c a a c a a t g t c t c g g g a c g t c t t g g g c a c c t c g c t c t g a a a a c t g c g c a c a t c t a c g c c a a g t g g a g t g a c g a t g g g c c g c g c t g t a a a t t g g c a g g a t g g t a a
G
K
R
D
A
A
T
S
P
R
T
L
K
A
Y
K
W
V
T
A
K L L G Y S S I Q T V N L L L A S T G T A S V F D A R S K L R T G Q G C R R V H C K P R G P P R R S G A G K T V T Q R R A I A G A D G P A K H M R D N T A A W D K R S P P S D A E V H Q L W G A A E P R M R A L V L L C A H R R R R I S A A L A D E V S L E T R D S L V K Y G K G G K Q R R G V F G E T L S T A A H C K E R R A G D G G S S S P A A V E R L Q R L C T P A N L S Y K V H H A L R R T A G T R L M R E G A S L N N V S G R L G H L A L K T A H I Y A K W S D D G P R C K L A G W * |
Comments=Pseudogene, start/stop is absent. Found common hit with non-adjoining gene: Deiho_00062240 |
| Deiho_00063760 - Deiho_00063790, Deiho_00063790 | 177059 | 177880 | pseudogene |
A
T
G
C
T
C
C
A
G
G
G
A
A
C
C
C
G
G
T
A
C G G T C C G C A G C A C T T C A C C C T T C C C G A A A A C C A G C A G T T G C A A G C G G C G T A C G T A C T G G C C C C A C A G A C T C C C G T G G A G A T C C A C T G G G T C A G T A C C G G T A T T C C G G A G T A C A A C C T G G A T A C C A C C C C T G A A A C G G T A T C T A T G A C G G C C C T G A T C G C G T T G C T C T C C C A G C T C C T A C A G G T T C A T C C A G A C A T T G A T C C G G A C C G G G T G T A T C T C G T T G G A C T C T C A C G G G G C T G G A A A G G G G T A T G G A A C G C A A T C A C G A A A T A G C C A G A T C T G T T C G C G G C C G C C G T A C C A A T C A G C G G C T C C G G C A G C C C A G C G C A T G G G G G G C G C C T C A G G A A C C T C G C C A T T T G G G C A T T C C A C G C C C C G G A C G A C C G T A C A A C C A A A G T G G A G T A C A C C C G C A A T A T G G T T G A C G C C A T C T T T C G T G C T G G T G G A C A G A C C C G C C T G C T G A G G T A C A C C G A G G T G G A A T A C G G T G A C C A T C A G G C C G A G T G G G A C A C G G C C T A C A A G A A C A G C G A A G T C T T C C G C T G G C T C A T C A A A T G G C G A C G T T G C T C A A C A G C C A A C T T T C C A G G G C G T C G C G T C C A C T T G C C C T C C A C C G C T G C G T T T T G C G T C G A T G A C T C G G T G G A T A C T G G T A C T C C G T T G A C T G G C G G G A A C C T G A T G G A T G G C G C C C G T G T T T C T G G G G T C A G C G C G G T A C G C A A A G A G T G G G A A T C C C C C G T G T T C T T C G C C A G C A G T T A C A G A C T C A A C G G A G T A C C A A T A C G T G G G C A T A C G C A T C T G G C T C C C T C C A G G G T A A A A G T C A G G T G C G G T T G A
M
L
Q
G
T
R
Y
G
P
Q
H
F
T
L
P
E
N
Q
Q
L
Q A A Y V L A P Q T P V E I H W V S T G I P E Y N L D T T P E T V S M T A L I A L L S Q L L Q V H P D I D P D R V Y L V G L S R G W K G V W N A I T K * P D L F A A A V P I S G S G S P A H G G R L R N L A I W A F H A P D D R T T K V E Y T R N M V D A I F R A G G Q T R L L R Y T E V E Y G D H Q A E W D T A Y K N S E V F R W L I K W R R C S T A N F P G R R V H L P S T A A F C V D D S V D T G T P L T G G N L M D G A R V S G V S A V R K E W E S P V F F A S S Y R L N G V P I R G H T H L A P S R V K V R C G * |
Maingene=Deiho_00063790; Extension SUCCEEDED with start of type START; Comments=Pseudogene, TGA/TAG stop codon, no start found, extending to start of BlastX alignment | |
| Deiho_00063790 - Deiho_00063810 | 178209 | 178554 | join (178209..178424, 178427..178495, 178498..178554) | pseudogene, missed gene |
a
t
c
a
a
a
a
t
c
g
g
g
t
c
g
t
g
g
g
a
g g t a c c g g a c a g g c t g c g t c t g a t c c c c g t g c t g g t g a t c a a c a c a c c c a g g a a a a a g a g c g g g c g t c c c a g a c c g g a c g c c c g c t c g g t c t t c a g c g g c c t c a t c c c c t g g c c t g a a c c c g g c a g t c c g t g g a g t c a g c t c c c c c g c a g a a a c a g c c c g a a a t c c a c g g t c t a t g g g c g g t t g t g c g c c t g g g g a a g t t t c c g c g c g g c g t g g g c c a c c g t c c t c g a a g a g g a c g a c c c g g a g t t g g g c a c c g a t t g g g a a t g g c a a g c c g c c g a c g g g c g c a t g g t c a a a g c c c c a g t g g g g a a a a g g g g g t c t a g a g c a
I
K
I
G
S
W
E
V
P
D
R
L
R
L
I
P
V
L
V
I
N T P R K K S G R P R P D A R S V F S G L I P W P E P G S P W S Q L P R R N S P K S T V Y G R L C A W G S F R A A W A T V L E E D D P E L G T D W E W Q A A D G R M V K A P V G K R G S R A |
Comments=Pseudogene, start/stop is absent |
| Deiho_00063830 - Deiho_00063850 | 183333 | 183792 | complement (join (183333..183767, 183769..183792)) | pseudogene, missed gene |
C
G
G
C
C
G
T
C
C
A
A
G
G
C
G
A
G
G
T
C
A A G G C T G A C G G A G C G C G C C A T C A T T G A C G C G G C C C T T G T T C T G C T G G A A G C C G A C C G G T C C A C G T T C T C T A T G C G C G C C G T G G C C C G A G C G C T C A A C A C A G A C G T C A T G G C G G T C T A C C A C C A C T T C C C C A C A A A A C A G G C T T T G C T C G G T G C G G C A G T C T C G G C G G C C T T T G C C C C C T T G G A G G A G A G C G A C T C C C C C T T C G G T C C C C C G G A G A A C T T G T C T G T G T A C C T C C A G G C G C T T T C T G A G C T G T A C C T G G G C G T T G T G C G C C G A T T C C C T G G T C T C A C G C T C G A G A T C G C G T C A G G A C G T T T A C C T G C A G G A C C T G C C G A G C T G C A C T T C G A C G C G T T G T T C G C T C A A G T C G T C C A A C C G C T G C A T C T C G A A C A G G A A G A C C A A C G A A A G G C G G G A C A T G T T C T C G T C G A C T A C C T C C A C G G C T T T G C A T T G
R
P
S
K
A
R
S
R
L
T
E
R
A
I
I
D
A
A
L
V
L L E A D R S T F S M R A V A R A L N T D V M A V Y H H F P T K Q A L L G A A V S A A F A P L E E S D S P F G P P E N L S V Y L Q A L S E L Y L G V V R R F P G L T L E I A S G R L P A G P A E L H F D A L F A Q V V Q P L H L E Q E D Q R K A G H V L V D Y L H G F A L |
Comments=Pseudogene, start/stop is absent |
| Deiho_00063870, Deiho_00063880 | 186149 | 187559 | complement (join (186149..187066, 187068..187559)) | putative pseudogene |
A
T
G
A
G
C
C
G
C
C
C
C
C
C
C
C
G
A
A
A
G G C G G C T G T G A C C C C T G T G A A A A T G A G C A A G G A T G T G C C C T T G C C C T T G C G C C T C A G T G A C G A C A A T C A C A A C G G G C A C G A T G A G A T C A A C G T G G C G C G C T T A T C C C T G A T C A G T G C C C A G T C T C G C G T C C C G G C C A G T T A C A C G G G G T G G A C C C G C A C C T A C C A G A G T G G C G A C C G C A C C G T T A C C G T C A C C T G T A C G G C C C T C A C A G G G C A T G T G G T G C C T C A C G G T C T G G A C A A C G A C G T G A T G G T G G C C A T C A T C A A T C T C T A T C T C G A A G A C G G C T G T C C G G A G G A C G G C A C C G T C C G C G T C T C C A T G C A C C G C C T C C T C C T G G C C G C C G G C C T G C A C G C C A G C G C C C A T T A C T A C C G C G A A G T T C G G C A A T G C C T G C G C C G C T T G C A G A G C A C G A G T T A C C A G A T T A C G C A G G G T T G G T G G G C C C A G G G T C G G C A G C G G C A C G T C G A C G C C A C G T T T A A C T A C C T G G G T A A G G T C A C G G C G A C C C G C G A G G A C G A A T A C G A C T C G A G C A G C G T G C T G G A A A T T C G C T T G C C G G A C G A G G T C G C T C A G A G C A T C C G T G A G G G A T A C G T C A A G C C T C T G G A C C T C A C G C T C T A C C G A G A G C T G A G C A G C C C T C C C G T T C G G G C G G T C T A C C G G G T T C T G G A C G C C T T A C G G T G G G A C T C T G G A T C T G C G C A G G A C C G G G T C A C C A T T A A C C T G C T G G A G T G G G G C G A G C G G T T G A G C A T C T A C A G C A C T G A A C C G G A C A A G A T C C G C C G C G T C C T C C A G C C G G C C C A T G A A G A A C T G C G C G A G C G G G G C A T T C T G C T G G A C G T A G A A G T G A C C G G T C G G G G C A A G G T C C A G G A A T T A A C G T A C A T A T T T G C C C C A A C C G A T C G C C T G C C C A A C G A A G A G T T G T T A C G C G C G C T C A C G A A A C G C G G C A T G T A C C C G G C T G T G G C C G G C A A A T A C C T G A C A G A A C A T C T G G A C C C A G C T C C T G T G C A C C T C G C C A T C C G G C G A T T T G A C G C C T A T C C G G G G C G C A A G C A G A A C G C C G G C G C T C T C C T G C G C G A C A T G C T G G T T C A T C C A G A A C G G T A C G C C G A A G T G T T G C C C T T G C C G G C G G A T G C C G A A G C C A A A A A G A C A G T G G C T G T G C A G T C C A T C A C G G A A A C G G A G A C G G C A G A G A T T G A G G C G C G G C A G C T T C A G G A G C T T C A G G A G C T T T C G C C T G A G C G C C A G C T C A C A C G C C T G G A G A C C A T G C T G A C C T T T G C C A A G G T C A C C C C C C T G C T T T C G G T G T T G G A C C G T G A C C G C T T G C G T A C C G C T G T A C T G A C C G G T C G C C T G G A G G T G A C C G A A G T G A T C A G G C T G C T C A C C A A A G G G A T T C A C C A G C C C C C A G G A G A T A A G G T C A T C G C G C T G C A A G C G C T C T T G T C G G A T T A G
M
S
R
P
P
R
K
A
A
V
T
P
V
K
M
S
K
D
V
P
L P L R L S D D N H N G H D E I N V A R L S L I S A Q S R V P A S Y T G W T R T Y Q S G D R T V T V T C T A L T G H V V P H G L D N D V M V A I I N L Y L E D G C P E D G T V R V S M H R L L L A A G L H A S A H Y Y R E V R Q C L R R L Q S T S Y Q I T Q G W W A Q G R Q R H V D A T F N Y L G K V T A T R E D E Y D S S S V L E I R L P D E V A Q S I R E G Y V K P L D L T L Y R E L S S P P V R A V Y R V L D A L R W D S G S A Q D R V T I N L L E W G E R L S I Y S T E P D K I R R V L Q P A H E E L R E R G I L L D V E V T G R G K V Q E L T Y I F A P T D R L P N E E L L R A L T K R G M Y P A V A G K Y L T E H L D P A P V H L A I R R F D A Y P G R K Q N A G A L L R D M L V H P E R Y A E V L P L P A D A E A K K T V A V Q S I T E T E T A E I E A R Q L Q E L Q E L S P E R Q L T R L E T M L T F A K V T P L L S V L D R D R L R T A V L T G R L E V T E V I R L L T K G I H Q P P G D K V I A L Q A L L S D * |
Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Deiho_00063910, Deiho_00063910 - Deiho_00063930 | 190090 | 190769 | complement (join (190090..190641, 190641..190769)) | putative pseudogene |
A
T
G
T
C
C
C
G
T
A
T
C
C
C
C
G
C
T
G
C
T G A T C C C A C C A C C G C T G A A C C T C A G G T C C A G G A T A T G G C C A G C G C C G C G C A G G T C A G A C T T A G C C T G A C G C C T A A C C C C T A C C G C A C G G T T G C G C A G C C T T C C G C A G C G G A A G A C T T G C T G G G T C T G A G C G A G G C C C A C A C C A A A G G A A A A T T G T C C G T T A T G T T G C G T G A G C A G C T G G C G C T G G T C A T C G C T C A G G A G A A C A A C T G C G G C T G C T G T T T C G C C G C C C A C A C C C T G A T C G G A G G A C T G C T C A A G G T C C C T G C C G A T G A A C T C C A G C G C A A T C G C G T C G G C C A A T T G G G T A A T C C C A A G G G C G T G G G C G G C T T G C G C T T C G C C C G C G C C T T G C C G C A G C G C T A T G G G G T T A C C A C C G A C G C C G A A C T C G C T T T T G C C T C G G C C C G G T T G A T C C G G C G G T G G T T G T G G C G A C G G A C G C A G G C G C G G T G G T T G C C A G C A A C A G T G T G G G C G G C A C C C C A T C A C C C C C G T G C A G G G T C G G C A G A C G C G C G G C G T C C T G C G G G C G G A C G A G A A C G C G A G C G G T T G A C C G A G G G G G C G C G G C T G G G G G A C C G G G T G T A C C T T G C C G A C G C T G C C C G G C A G C G G G A G C T G G A G G T G C A G A C T T C G C C G C C G C G T G C G G T C T G C A G C G T T T C G G T G C T C C G G G A G A C G T G G C C A G G C T G A
M
S
R
I
P
A
A
D
P
T
T
A
E
P
Q
V
Q
D
M
A
S A A Q V R L S L T P N P Y R T V A Q P S A A E D L L G L S E A H T K G K L S V M L R E Q L A L V I A Q E N N C G C C F A A H T L I G G L L K V P A D E L Q R N R V G Q L G N P K G V G G L R F A R A L P Q R Y G V T T D A E L A F A S A R L I R R W L W R R T Q A R W L P A T V W A A P H H P R A G S A D A R R P A G G R E R E R L T E G A R L G D R V Y L A D A A R Q R E L E V Q T S P P R A V C S V S V L R E T W P G * |
Maingene=Deiho_00063910; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Deiho_00063990 - Deiho_00064020 | 197181 | 197713 | complement (join (197181..197285, 197285..197470, 197470..197523, 197525..197713)) | pseudogene, missed gene |
G
T
G
A
C
G
C
C
A
A
G
C
T
C
G
T
T
T
C
T
T C C G G G T G C A G C G G A C C G C G C C G C A T T C T G G A A A G C A G T G G C T G A A C G G G T C C A C T C G G A C C A T G T G C T C C T A A C C T G A C C C G G A C T C G G G A A T A A G C C G G C A C A T C C G G A T G T G C G C G C T A T G G A G G A G C C C G C T A C G G T G G T G C T G C G T C A C A T G A C G C A A C T G G T C A C A G C C C A G T C C A T G G G C G G G T T C G C G G C A C T C A A A G T G G C G C T G G C G G C C T C A A T G A A G G T C A A A C G G C C C G T G C T G C C C G C A A C C T C G G G C G G T G T G C C T G T G G C C C A T C T C G G C G G T T G A G C T T G G C C G T C G G C G T A C T A C C G C A C G T A T C C A G A C G C G G C G C C G T G A A T A A G C A C G G T G A A T A A G G A C T T G T C G G C G C A A C T T C C G C T C A T C G T C G C G C C G A C C C T C C T G C T T T G G G G G G A G C A C G A C C C G A T C A G T C C C G T C G C T G T T G G G G A G C G G T T G A G G G C C C G G T T G A C C A A C A C C T C T C T G T C T G G A G C T G A C C A T G A C C T T G C A T C A T A T T G A
V
T
P
S
S
F
L
P
G
A
A
D
R
A
A
F
W
K
A
V
A E R V H S D H V L L T * P G L G N K P A H P D V R A M E E P A T V V L R H M T Q L V T A Q S M G G F A A L K V A L A A S M K V K R P V L P A T S G G V P V A H L G G * A W P S A Y Y R T Y P D A A P * I S T V N K D L S A Q L P L I V A P T L L L W G E H D P I S P V A V G E R L R A R L T N T S L S G A D H D L A S Y * |
Comments=Pseudogene, >1 frameshift are present |
| Deiho_00064040 - Deiho_00064060 | 203190 | 203378 | complement (join (203190..203276, 203276..203311, 203313..203378)) | pseudogene, missed gene |
G
T
G
A
A
C
A
G
G
C
C
G
A
C
C
G
A
A
C
A
T T C C C A C C A C C C C A C A C G A C G A C A G G A A C G T C A G C A G C G G G G T T T C C G G T C A C G G C A C C G G G C G C A A C G T T T T A T C A C C T C C C A T G C C C G C A T C G C C A A T C T T C A C C A C C C G G C T C A C T C C A C C C T T C C T G C A C G C C A C G G C C G G C A C C A T C G A C A A G C C G C C T G C C T T
V
N
R
P
T
E
H
S
H
H
P
T
R
R
Q
E
R
Q
Q
R
G F R S R H R A Q R F I T S H A R I A N L H H P A H S T L P A R H G R H H R Q A A C L |
Comments=Pseudogene, start/stop is absent |
| Deiho_00064100 - Deiho_00064110 | 209110 | 209587 | join (209110..209346, 209348..209587) | putative pseudogene, missed gene |
t
t
g
c
t
c
t
t
t
c
t
c
g
g
t
g
a
a
g
c
c g c a c t c t g g c t g a c c c a a c c c c a t a c c t a c a c t t g g c g g c c t a t c g g c t g t c c g a t g g a a g t g c c c a c g a g c a a g g c t c g c g g t a t t a c g g c g c g t c t g a a c c t c a t g g g c t g t g t g g a c t t t g c c a g t g g c a a a g t c c t c t a c c g t g a g a t c c a a g g c a a c a c c a a a g c t g c c g a t a c c g t c g c t t t t g t g g a t a t t c t g g c c c a g c g g g c c g g g g c g g c c t a c c c c a c g g t g c t c c t g a t g g a c c a a g c g a g c a t t c a c a c c a g t g c c g a g g t g g g a c a a c a t c g a c a g c g g t g g a a a g a a c a g g g c c t g g t c g t c g c t t a t c t t c c g c c c t a c a g c c c a g a a c t c a a c c c g a t g g a g a g a c a g t g g c g c a a g c t c a a a t a c c a c g a c c t c c c a c a c c g a c a t c a c a c t t c c a a a g c c a a t c t t c g a g g g g c c g c c t g g g g c g t c g c c a t a t g a
L
L
F
L
G
E
A
A
L
W
L
T
Q
P
H
T
Y
T
W
R
P I G C P M E V P T S K A R G I T A R L N L M G C V D F A S G K V L Y R E I Q G N T K A A D T V A F V D I L A Q R A G A A Y P T V L L M D Q A S I H T S A E V G Q H R Q R W K E Q G L V V A Y L P P Y S P E L N P M E R Q W R K L K Y H D L P H R H H T S K A N L R G A A W G V A I * |
Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Deiho_00064150 - Deiho_00064170, Deiho_00064170, Deiho | 214636 | 215206 | join (214636..215040, 215039..215206) | pseudogene |
a
t
g
c
c
a
g
g
t
g
c
t
a
t
g
t
c
g
c
c
c t g g g t c c g a c a c t t t c c c a c t t g g t t t g c g c c c t t t c t a a c g c a c t t t c g c c a c a c a g c a c a a c g g a c t t g g g c a c c g t t g t a c g t c c g a g g a t t g t g c a g c g c t g c g t c g c g g a a a a g c a t g c a t c c t c t g a c t g c c g t g g t c g c t c c t g g g a a a g a a g a c c a c g t t c a g c a c t t c a t c a c c g a c a g t c c c t g g a c g a c t c a t c c c c t c g a a a c g c t g c t g g c t g a g c g g g c c c a g c a g a t g c t t g g a g g c a a a g a c g c t g t c c t g a t c a t t g a c g a t a t c t g c c t g a c c a a g t t t g g a a c g a a g t c t g t g g g c g t g g c c c g t c a a t a t t c a g g a c a g g t g g g c a a g a t c a c g t c c t g t c a g t g t c t g g t c t c c c t g a c c t t c t c c c t g g c c c t a c g a c t c t t c c t c c c g c a g g a g t g g a c c a g t g a t c c g g t g c g t c t t c a a g c t g c t g g t g t t c c a g t g g a a c a c c a g c a g c c a c a g a c c a a a t g g g c g t t g g c t t t t c a g g a g t t g g a c c g g g t g c g c g a a c a c g t g a c c t t c g g c a t g g t t t t g g c g
M
P
G
A
M
S
P
W
V
R
H
F
P
T
W
F
A
P
F
L
T H F R H T A Q R T W A P L Y V R G L C S A A S R K S M H P L T A V V A P G K E D H V Q H F I T D S P W T T H P L E T L L A E R A Q Q M L G G K D A V L I I D D I C L T K F G T K S V G V A R Q Y S G Q V G K I T S C Q C L V S L T F S L A L R L F L P Q E W T S D P V R L Q A A G V P V E H Q Q P Q T K W A L A F Q E L D R V R E H V T F G M V L A |
Maingene=Deiho_00064170; Extension SUCCEEDED with start of type START; Comments=Pseudogene, normal stop not found. Pseudogene, frameshift/stopcodon as well as no stop codon |
| Deiho_00064190, Deiho_00064190 - Deiho_00064200 | 215309 | 215656 | pseudogene |
C
T
G
G
A
A
T
A
T
C
G
A
C
T
G
C
G
G
T
A
C T A C G C G A A G C C G A A G C T G C T G G T G A T C G A T G A A T T T G G C G T G T G G C C A T A T G A C C G C C T G G C G G C G A A T G C C C T G T T C G G C T T G A T C G C T G C G A G G T A C G A G C G G G G C A G C G T G A T C C T G A C G T C G A A C A A G G G C T T T G C T G A T T G G G G C G A A G T G C T G G G A G A T C C G G T A G T G G C G A G C G C C A T T C T G G A C C G A C T G T T G C A C C A C A G C C A C G T G T T G A A C A T C A A G G G G G A G T C A T A T C G C C T G C G G G A G A A G A A G A A A T C T G G G T T G T T C C C C A G C G C A C T G G T G G G G A T C G G C G A G A C G G G T C A G G A G G T G A A G C G C C G T T G A
L
E
Y
R
L
R
Y
Y
A
K
P
K
L
L
V
I
D
E
F
G
V W P Y D R L A A N A L F G L I A A R Y E R G S V I L T S N K G F A D W G E V L G D P V V A S A I L D R L L H H S H V L N I K G E S Y R L R E K K K S G L F P S A L V G I G E T G Q E V K R R * |
Maingene=Deiho_00064190; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and <50% median/second shortest homolog | |
| Deiho_00064200, Deiho_00064210 | 216101 | 217161 | join (216101..216637, 216637..217161) | putative pseudogene |
a
t
c
a
g
a
a
c
g
g
t
t
a
c
t
t
t
c
c
a
a c a c a c g g c c g a a g a c t t c t g g g g c a t c t a c g g c c g g a g t a g c t g c g c g g t g g a a c g a c g a c g c a g t c a c c t c c t c g c g t t c c t g g c a g a a g g g a a a a g c g c t g c t g a a g c c c t g a a g c t c a c g g g c t a c t c g t a t c a a g g t g c a g a c a a a a t c a t c g a c g c g t a c c a c c a a c a t g g t c t g g c g g g g c t c a a a g a t c a g c g a c a c c a g a a c a g t g g t g c a c c g a c c c t g c t c a g c g a c g c c g a a g t g c t c c t c c t g g c g c g g a c g a t t c g t g c a g a c a c c g c c a g c g g c g g t g t c t g g a a t g g t g c a c g a g t g c a g t c c t g g g t a a a g c a g g a a t t g g a g a a g g a c g t g c a t c t g a g c c g c t g t t a t g a g t t t t t g g a t g c g g t g g g a t a t a g c c t c c a g g t c c c t c g g c c t c g a c a t g t c g a g g c c a a c c a g g t c a c t c a g g a a g c g t t c c a a a a a a a a t c c t c c c a g c c g t g g t c c a a g c a g c t a c g g c g c g t a c t g a a g c a a c t g g a c g a g c g g g t a g a a g t c t g g t g c a t g g a t g a a c a c c g t g t g g g a t t g a a a c c c c t c g t c g g c a a a c a a t g g t c c g a g c g a g g c a a a g c a c c g a c c g t g c g t g t c c a a c a c c g g t a t g a a t g g c t c t a t a t c a g t g c g t t c g t c t g t c c t c a g a c g g g a g a g a g c c a g t a c t g g t t g t t g c c g a c g g t c a a t a c g g c g g c c t t c c a g g c t g t g c t c g a t c g c t t t g c c c t c g a c a c a c a g g c t g g a a a g a c c c g g g a g a t c a t c t t g g t c t t g g a t g g t g c g g g g t g g c a t g c c a c c c c g c a g t t a a a g t g c c c a c c g g g c a t c g a g c t c g t c t t c t t g c c g c c c t a c t c c c c a g a g t t g c a a c c c g c c g a a c g c c t t t g g t c c c t c a c c g a t g c t c c c t t g a a g a a t c g t c a c t t c g a a a c c c t g g a a g a c c t g a c c g t g t t g c t t g c g g a g c a g t g t c g t c g g t t g g a a c a g c a g a g g g a g a g a a t c c g t t c t c t c a c c t t c t t c c a t t g g t g g c c t t g c a t a a c a a a t t a a
I
R
T
V
T
F
Q
H
T
A
E
D
F
W
G
I
Y
G
R
S
S C A V E R R R S H L L A F L A E G K S A A E A L K L T G Y S Y Q G A D K I I D A Y H Q H G L A G L K D Q R H Q N S G A P T L L S D A E V L L L A R T I R A D T A S G G V W N G A R V Q S W V K Q E L E K D V H L S R C Y E F L D A V G Y S L Q V P R P R H V E A N Q V T Q E A F Q K K S S Q P W S K Q L R R V L K Q L D E R V E V W C M D E H R V G L K P L V G K Q W S E R G K A P T V R V Q H R Y E W L Y I S A F V C P Q T G E S Q Y W L L P T V N T A A F Q A V L D R F A L D T Q A G K T R E I I L V L D G A G W H A T P Q L K C P P G I E L V F L P P Y S P E L Q P A E R L W S L T D A P L K N R H F E T L E D L T V L L A E Q C R R L E Q Q R E R I R S L T F F H W W P C I T N * |
Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Deiho_00064240 - Deiho_00064260 | 219459 | 219635 | pseudogene, missed gene |
T
T
G
C
C
T
T
T
G
C
T
G
C
C
C
A
G
C
C
T
T A C C C G C G T C C G C C C G G C C C T C A C G C C G C T C G C C T C A C T C G G C C T G A T C A C C G T G A T G G T G C T C G C T C C G A T C T T C C A C G G C G T C C G T G G C G A G G C G A A G C T G G C G C C C A T G A A C C T C A T C C T G G C C G T T C T T G C C G G T G T C A T C G C C T G G G G C C G T
L
P
L
L
P
S
L
T
R
V
R
P
A
L
T
P
L
A
S
L
G L I T V M V L A P I F H G V R G E A K L A P M N L I L A V L A G V I A W G R |
Comments=Pseudogene, start/stop is absent | |
| Deiho_00064270 - Deiho_00064280 | 221661 | 222193 | complement (join (221661..222026, 222028..222060, 222060..222080, 222080..222193)) | pseudogene, missed gene |
A
T
G
A
C
G
C
C
G
T
C
C
G
G
T
C
C
C
A
G
G A C C G C C G A C A G T C A G G G T G G C C T T C C A C T G T G C C C G A A C C T G C T T G G C C G G C C C T T T G A G G C C T A G C C G C C C A A C A G G G T C T G G G C A T C C G C C C T G A C G T A C T T G C T G G C C C G T T A T T C C C G C G C C T T G G T G G G G T G C G C G G T G G A C G C G C A A A T G A C G G G C A C A C T G C C G C C G T C T G C C C T T C A G G T G G C A G G G C A G C T G G A C G C C G C C C T C C C C T G C C A G G C C T G C T G C A T C A C G G C G G C T G A G A C A G C C C A T A G G C C A G C C G G G G T C T T T C A A G A A G A G C G G G C C G G C A T G G T G G C C A G G A G C A G C G T G A G C C G C A A G G G A G G T T G C T G G T A C A A C C C C C C C A T C C T G G A A A G C G C C T T G G G C T C T G G G A A T C G G G C G C C G C T C G A A G A C G T C A G C T T C C G C A G C C G G G G C G C T G C C C G G C T G G C A G C C T T C G G G T A C G C G G A A G T C T T T T A T A A C G G T C A G T G C C G C C A T T C C A C C C T C A G G T C C T T G A C G C C C C A G A A G G C C C G A A C G
M
T
P
S
G
P
R
T
A
D
S
Q
G
G
L
P
L
C
P
N
L L G R P F E A * P P N R V W A S A L T Y L L A R Y S R A L V G C A V D A Q M T G T L P P S A L Q V A G Q L D A A L P C Q A C C I T A A E T A H R P A G V F Q E E R A G M V A R S S V S R K G G C W Y N P P I L E S A L G S G N R A P L E D V S F R S R G A A R L A A F G Y A E V F Y N G Q C R H S T L R S L T P Q K A R T |
Comments=Pseudogene, start/stop is absent. Found common hit with non-adjoining gene: Deiho_00064650 |
| Deiho_00064320 - Deiho_00064350 | 230637 | 230823 | join (230637..230810, 230812..230823) | pseudogene, missed gene |
a
t
g
a
t
c
g
g
g
c
g
g
t
g
g
c
g
c
g
c
g c a g a a c g t g g g c g t c a c c g c c c c a g g c g a c c t c g c g g a t g c c a g g t g g a a t g t c c g c g g g c c g c t g c c c c c t c c t g a a t c t c t t g t g g g t c g t c c c c g c a t g t g g t c g t t g c g a a a a g t t c a g g a c g g c g t c t t c t c t g t c c t c c g c g c a g g c g t c g c c t g g c g g
M
I
G
R
W
R
A
Q
N
V
G
V
T
A
P
G
D
L
A
D
A R W N V R G P L P P P E S L V G R P R M W S L R K V Q D G V F S V L R A G V A W R |
Comments=Pseudogene, start/stop is absent |
| Deiho_00064380 - Deiho_00064400 | 235941 | 236312 | pseudogene, missed gene |
C
T
C
C
C
T
G
C
T
C
T
C
C
G
C
C
G
C
A
G
T G C C C C A G C C T T C A G G C A T G T G C G G C A A C G G C T C C A A T T G C A C G A C G A A G A G G C G A A G A A G C T C G T T T C G C A G C C C G A C C T C A T C T G C C A C G A A G A C C T G A A C G T G A A G G G G A T G G C C C A G G G C A G C C T G A G C A A G C A G A T C C A C G A C G T G G G T T G G G C A C T C C T C A C T T C C A A G G C A G A A T G G G C C G G G G A A C G A G T T G T C G C C G T A G G T C C G A G G T A C A T G C C G T G C T G C G C G T G C G G C C A C A C C G G G C G G G G A A A C C G G A G G G G G C A G G C G A A C T T C A G A T G T C T G A G T T G C G G G C A C G C C G G G A A T G C G G A T G T G A A C G C G G C G A A G G A C A T C C T G G C G C A G G G A C T G
L
P
A
L
R
R
S
A
P
A
F
R
H
V
R
Q
R
L
Q
L
H D E E A K K L V S Q P D L I C H E D L N V K G M A Q G S L S K Q I H D V G W A L L T S K A E W A G E R V V A V G P R Y M P C C A C G H T G R G N R R G Q A N F R C L S C G H A G N A D V N A A K D I L A Q G L |
Comments=Pseudogene, start/stop is absent | |
| Deiho_00064380 - Deiho_00064400, Deiho_00064400, Deiho | 236359 | 237254 | complement (join (236359..236436, 236436..237254)) | putative pseudogene |
G
T
G
T
G
C
G
A
A
G
A
T
G
A
A
G
C
G
G
C
C C G C C C T C C A A C G C T G T C C T G C T C G T C G A C G A G G T C G C C A C A A C T G C T G A C T G A C G G C A A A G G A G G A G T C G C G A A T G T C C C A G C A G C G C A A C C C A C C G A C C A C C T C G A C C A G C G G T A C G C G C A C C G C G A A C G A C A T C A T C C A T T A C C A A A C G G C G G G C C A C A G C A C C C C C C G G T C A T C G C C C T G C A C G T C T T G A T G G G C A G C G G C G C G T G C T G G G C A C C C C T G G C G C G C G T T C T T G A A G A C G A G T A C A C C G T G C T C A T G C C C G A A G C G A G A G G G C A C G G A A G A T C A A G C G C T T C A A C A C A C G G A T A C C T G T A C C C G G A C C A C G C C A A T G A C G T T C T C G G C C T C A T C G G T G C C C T G A A G C T G A C G C G T C C A G T C C T T C T C G G C C A T T T C A T G G G C G G C A T G A C G G C C G C C C T G A C G C G G A T C T T C A A G G C G C C G T A T T G G T C G A C C C G A C G T G C A T C A G T T C C G A G C G G C A A C G C G A A A G T C T A C G G G A G T G A C G T G G C T G A G C A G C A T C G T C A C G C G C T G A A C T T G G A C A A G A G C G A A C T G G C C G C G C A G G C G A A G C G T A G G C G T C C A T C C C G T T C G A C C G A G G T G A G T G A G C G C C T C G T T G A A G C G G G G C T T C A G A C A C G C A T G C A G G C C T T T G A A G T A C T C G C C C C T C T C A A C C C C G A A T A C C G C G A A C T C A T C C A G A G C G T T C G C G T T C C C A T C C T C T T G A T T T T G G G A A G T T C A G G C A C C G T C A C T C T G A A T C A G G C C C A G G A A C T C C A G A C C C T C G A T C G G G G T C C G C G C T A T G A G G G T A T C C C G A C G T T G G C C C A C G G T C T G C C A T A C G A T A T G C C C G A G C A G G T T G C G C G A G C C G T C A A G G C C T T C T T C C G G T C C C T C C C A G C A C A G T A A
V
C
E
D
E
A
A
R
P
P
T
L
S
C
S
S
T
R
S
P
Q L L T D G K G G V A N V P A A Q P T D H L D Q R Y A H R E R H H P L P N G G P Q H P P V I A L H V L M G S G A C W A P L A R V L E D E Y T V L M P E A R G H G R S S A S T H G Y L Y P D H A N D V L G L I G A L K L T R P V L L G H F M G G M T A A L T R I F K A P Y W S T R R A S V P S G N A K V Y G S D V A E Q H R H A L N L D K S E L A A Q A K R R R P S R S T E V S E R L V E A G L Q T R M Q A F E V L A P L N P E Y R E L I Q S V R V P I L L I L G S S G T V T L N Q A Q E L Q T L D R G P R Y E G I P T L A H G L P Y D M P E Q V A R A V K A F F R S L P A Q * |
Maingene=Deiho_00064400; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Deiho_00064490 - Deiho_00064510, Deiho_00064510 | 247095 | 247406 | pseudogene |
A
T
G
G
A
A
C
A
T
C
C
T
G
G
A
A
G
C
A
G
C A G A C G G T C T C A A C C C G G A T C G C A C G G G T A C T A C A C G G T G C C G T T C C C C T G G G A A C G C A A T G A T C T G G T G C A G C T T C A C A A G C A G A T G G G T G G G A C C T T C C C G A T T G C C A C G G C A C C T C G C C G T A C C G A T G C C A G C C A C C T G C G T C A G C A G G T C G T G C A G G A G G A C A G C A G C G T G A C C G G G C C C A C C C A C T G C T T T T T C A C T C C G G C G C A A G T C G C G T A C T C C T G G A A T T C C C T G C G C A C C T G G G T G G A G C A G G G A C A G G C G C C C G A C A A T G A G G A C A T C A C C G G G A A G T A G
M
E
H
P
G
S
S
R
R
S
Q
P
G
S
H
G
Y
Y
T
V
P F P W E R N D L V Q L H K Q M G G T F P I A T A P R R T D A S H L R Q Q V V Q E D S S V T G P T H C F F T P A Q V A Y S W N S L R T W V E Q G Q A P D N E D I T G K * |
Maingene=Deiho_00064510; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and <50% median/second shortest homolog Blast report of region is empty | |
| Deiho_00064550 - Deiho_00064580, Deiho_00064580 | 251937 | 252667 | join (251937..252131, 252131..252667) | putative pseudogene |
a
t
g
g
g
t
a
a
t
c
t
c
c
t
c
c
g
g
t
c
c c c g t c g g a g t t c g c c a c c a t c g a g g g g c a a c t c c t g g a a t a c a c c c g g t c a g g c g c g g g c g c g c c t c c a g t g g t g c t c g t c a a t g g t g c g g g c g g t c c c a t g g a c a g c t g g t t t c g c g t c t t t g g g c c c a t c a c g c g g c a a t c c a c t g t t t t t g c c t a c a a c c g t c c c g g t c t g g g c c c a t c c g t g c c t c a a a c g g g c c c t g t c a t g c t g c g t a c c t t g c a g g g t c t t c t g g c g c a c g c g c a g g t g g c c c c a c c c t t t g t c t t g g t a g g a c a t t c t c c g g g c g g t c t c c t t g t c a a t t t a t t t g c c c g a a c c t t t c c t g a g c a a a c t g c t g g c g t g g t g c t g g a c g c a g c a a c c c c g g a a g a c g t g c t g t t g c a t c g c c c g c c c t c a t c a g g g t g g c g g g t c c g g c t t a a c c g g g c a t t t c a c c g c c c t c a c c c c t g g g a a g a g a c g c g a c a c g t c g g g g c c c t g a g c g c g c a g g t c c a g g c c g c c g g c g a c t t c c c a c c g g t c c c g c t g t t g g t g c t g a g c g g c a c c c g g t a c c c g c g c g g g a t g c c g a a g g c a a t g c g a g a t g c c c g t a c g g t g c a t c a a g a g a a c g t c g t g a g g c t t t c t c c a t g g g g t g a a c a c c a c t t c g c g a a g c g g a g c g g c c a t t t t c c t c a g a t c a c a g a g c c c c a a c t g g t c g t c g a g g c c a t c c g c g c c g t g t t g g g c a a a g c g a c t t g a
M
G
N
L
L
R
S
P
S
E
F
A
T
I
E
G
Q
L
L
E
Y T R S G A G A P P V V L V N G A G G P M D S W F R V F G P I T R Q S T V F A Y N R P G L G P S V P Q T G P V M L R T L Q G L L A H A Q V A P P F V L V G H S P G G L L V N L F A R T F P E Q T A G V V L D A A T P E D V L L H R P P S S G W R V R L N R A F H R P H P W E E T R H V G A L S A Q V Q A A G D F P P V P L L V L S G T R Y P R G M P K A M R D A R T V H Q E N V V R L S P W G E H H F A K R S G H F P Q I T E P Q L V V E A I R A V L G K A T * |
Maingene=Deiho_00064580; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Deiho_00064620 - Deiho_00064640 | 258937 | 259355 | join (258937..258999, 259001..259258, 259258..259341, 259341..259355) | pseudogene, missed gene |
a
t
g
a
t
g
t
g
g
c
g
c
t
g
c
g
t
g
a
g
t t g g a g a c c a g c c g g c a c a c a c c c t a a a a c c c g c c t g c a g g c a g t t c c t a t a c g a c t t t a c c g c c a g g g t t g g a g c a t t c c t c a a c t c g c c a a a c g c t t t g a t c g c a a t c c t c a a g c g a t t c t c a a g g a t c t g a c g c g c t t c a t a g a g c g t g g a a t a c c a g g t t t a g c c g a t g a t t c c c c a g c c g g a c c a c c c t c g c t g a t c a c g g c a g a a a c c g a g c a g t t t c t c c a c g a g a a a c t g c g a g a a g c g c g c t t c t g g c a a g c c a c c a t g t t g t g c g a g g a a c t c a g c a c c t g g t g g g g g g t c c g t g a t c c g c c c c g g g c a c t c t c c a a t c a t c t t c a g c g c t t g a g g t a c a g c t g g a a a c g c g c g a g g t a c c c a c c c g c c a a g a c c c c t c g g t c c a g a c g t
M
M
W
R
C
V
S
W
R
P
A
G
T
H
P
K
T
R
L
Q
A V P I R L Y R Q G W S I P Q L A K R F D R N P Q A I L K D L T R F I E R G I P G L A D D S P A G P P S L I T A E T E Q F L H E K L R E A R F W Q A T M L C E E L S T W W G V R D P P R A L S N H L Q R L R Y S W K R A R Y P P A K T P R S R R |
Comments=Pseudogene, start/stop is absent. Found common hit with non-adjoining gene: Deiho_00064100 |
| Deiho_00064620 - Deiho_00064640, Deiho_00064640 | 259418 | 259990 | putative pseudogene |
A
T
T
G
A
A
G
T
A
C
C
T
C
G
G
A
C
G
G
G
G T T G T C C C T G A T G T T C T C C G T G G G T G C C A C C T G G T C C A G G C G G G G A T C T G G C C A G C A G T T C A G G A T C C C C A C A C G G T G G G G A T C C G C C G G A C G T C T C A A C C T C A T C G G C A C C T A C A G C C T G C A C G G T G A T C A A C A G G A C C T G G A A G T C C G A G A G T T G C A A G G C A C C T G T A C T G G T A A A C A A G T C A T G G C G T A C C T C G A T A C C C T G G C C G C T C A G T G C A C C G C G G A T C A A A T C G C A G T C G C C G T G T T G G A C A A C G C G C C C T T T C A C A A G G G C G C G A A G C T C A G G G A A A A G G T C G C A C G C T G G G A A G A G C A G G G T T T G T A C C T G C A A T A C C T C C A G C C T T A T G C G C C G T T T C T C A C T C T T A T T G A G G G C G T G T G G C G T C A A C C C A A G G G A A T T T T G A T G C C A C G C C G C T G C T A T G A C T C G A T C T C T G A A C T T C G A G C A G C G C T T G T C A C T G G A C T C A A G G T T C T C G G A G C G C T T T A T C T A A A T G C C A A A T G T G A T G T A T G G A G T G A A C C C A A T C G A G C G G A C C G C A G G G C A A G T C A C A T C T G G G C G G T A G T G T A G
I
E
V
P
R
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G
L
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L
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F
S
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G
A
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S
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R G S G Q Q F R I P T R W G S A G R L N L I G T Y S L H G D Q Q D L E V R E L Q G T C T G K Q V M A Y L D T L A A Q C T A D Q I A V A V L D N A P F H K G A K L R E K V A R W E E Q G L Y L Q Y L Q P Y A P F L T L I E G V W R Q P K G I L M P R R C Y D S I S E L R A A L V T G L K V L G A L Y L N A K C D V W S E P N R A D R R A S H I W A V V * |
Maingene=Deiho_00064640; Extension SUCCEEDED with start of type NONCANSTART; Comments=For manual analysis, pseudo or non-canonical start codon, extended gene >80% median/second shortest homolog | |
| Deiho_00064660 - Deiho_00064670 | 261213 | 262083 | complement (join (261213..261581, 261584..261715, 261718..262083)) | pseudogene, missed gene |
A
T
C
A
A
T
G
A
C
C
A
G
A
A
C
A
C
G
C
T
C T G G G A G G T A T C G G A C G A G C T T T G G G T C C G T C T G G G C C C A G T G C T G G T G A T C A A C A C A C C C A G G A A A A A G A G C G G G C G T C C C T T G A G G G A C G C C C G C T C A A T C T T C A A C G G G C T G A T T T G G T T G G C C C G A A C C G G C A G T C A G T G G A G C G A G T T G C C C C G C C G G T A C G G T C C G A A A T C G A C T G T C C A C G A G C G G T T C T G T G C C T G G G T G G A A C A C G A A T G C C T C C G T G C G G C A T G G G C C C T C G T G C T C G A A G A G T A C G A C C A G G A A C T G G G C A T G G A T T G G G A A T G G C A A G C C G C C G A C G G G A G C A T G G T C A A G G C C A G G G T G G G A A A A A G G G G G C C G C T G G T G C C C G A A G C G A C G G G C A G C A A C C C C A C C G A T C G G G G C A A G G C C G G G T G T A A A C G T A C C C T C C T C A G C G A C G C G A A A G G C A T T C C A C T C T C C G T C G T G C T C T G T G G T G C C A A G C G T C A T G A C A G C A A G A T G C T G A G T G G C C C T C G A T G C T G T C G T C G T T G C T G T T C C T G C T C T C C A G G A G A G C A G G A A C A G C G C C A T C T C C T C C T G G A C C G T G G G T A C G A C A C G C A G G C G T G T C G T C A A C T G G C T C T G G A T G A A G G T C T G C T C G C G C A T A T C C C C A A G A A A T C G A C G G C C G C T C C G C C C A T T C C T G C T C C T G G T G A T C C A C A A C G A C A C C C A C C C C G G C G G T G G G T G G T C G A G G T G G G C C A C A G T T G G T T C A A C C G T T T C C G T C G C A T C C A G A C G C G C T G G G A G A A G C G G C A A G A C C T C T A T C T G G G C T T T G T C G A A T T G A C C G C T T G C C T C A T C A T C T G G C G C A A A C T C G C C C C C A T T G C T C C T C T C A A A A A A T C T T C C G G A T A G
I
N
D
Q
N
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L
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D
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W
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V L V I N T P R K K S G R P L R D A R S I F N G L I W L A R T G S Q W S E L P R R Y G P K S T V H E R F C A W V E H E C L R A A W A L V L E E Y D Q E L G M D W E W Q A A D G S M V K A R V G K R G P L V P E A T G S N P T D R G K A G C K R T L L S D A K G I P L S V V L C G A K R H D S K M L S G P R C C R R C C S C S P G E Q E Q R H L L L D R G Y D T Q A C R Q L A L D E G L L A H I P K K S T A A P P I P A P G D P Q R H P P R R W V V E V G H S W F N R F R R I Q T R W E K R Q D L Y L G F V E L T A C L I I W R K L A P I A P L K K S S G * |
Comments=Pseudogene, abnormal start as well as frameshift |
| Deiho_00064660 - Deiho_00064670, Deiho_00064670 | 262150 | 262623 | pseudogene |
A
T
G
A
A
C
C
T
G
T
C
T
T
C
C
T
T
C
C
G
G C C G C T G T C C A C C G A A C C C A C C T C C C A C A A G C C A C A A G C G G T G G C A A G G C G G G C C T G G C G C G C G T G T A T C C C C G T C C T C G C C C T G A C C G C C C T C G G T T C A G G G C A C G C T G C T C C C G C T G A C T T C G T G G G C A C C T G G A C C A A C G C C A A C G C C T C G A C C C A G G G C A T C A C C C G G G T G G T C A T C T C C C G C A C C A G T A C C A C G G C G C T G C G C G T G C A G G T C T T C G G C A A G T G C A G C C C C A C A G A C T G C G A C T G G G G T C A G G C G C C T G C A A T C A C C T A C G G A G C A A A C G T T C A G G A C G C C G A C C A C C G C A C C G C G A G C G C C G T C T T C A G G A A G G G G T T T T C C A C C A C G C T G C T C G T G C T C A G G C T C T C G G C A C G T T C G T T G A G C G T G C A G T C C C T G A C A G A A T T C A C C G A C G G A A G T G G C C G T C A G A A C T A C G C C T C T G A G G A G G T G T T C C G C C G C T A A
M
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S
S
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A
V A R R A W R A C I P V L A L T A L G S G H A A P A D F V G T W T N A N A S T Q G I T R V V I S R T S T T A L R V Q V F G K C S P T D C D W G Q A P A I T Y G A N V Q D A D H R T A S A V F R K G F S T T L L V L R L S A R S L S V Q S L T E F T D G S G R Q N Y A S E E V F R R * |
Maingene=Deiho_00064670; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and >50% and <70% median/second shortest homolog, Blast redone with 250 hits and e-05, extended gene <70% median/second shortest homolog | |
| Deiho_00064720 | 269906 | 270721 | pseudogene |
G
T
G
G
G
A
G
A
A
A
A
C
G
A
G
C
C
G
C
C
G G A C G T C C T G A C C G C T C G G G C C G C C G C G T C G G C C T T C G A C A G C C T C T T T C C C G G A C T C G G A G T G G T G G C G C T G G C T G T A G G G G C T G T C G G T G C G G C C A A C A T C A T G A T C G T C T C G G T G C T T G A A C G C C G C T C G G A G A T C G G C C T C C G C C G T G G G T T G G G C G C A G C G C G A G G T C A A A T C C G G A C G C A G T T T C T C G C G G A G T C G G T T C T G C T C T C C A T C A T G G G C G G C G T T G C C G G C G T G C T G C C T G G A G C T G T G G C G A C G G C T G T C T A C G C C A G T T C G G A G G G C C G G G C C G C C G T G A T C C C G G T T G A G G C G T G G G C A G G C G C G G T C G C C T C G G C C A T C C T G A T C G G C G C G T T C G C T G G T C T G A T C C C G G C C A T T C A G G C G T C C C G A A T G C C G C C A A C G G T G G C T T T G C G A A C G C G G T A T G C G C A C G A C A A G A G G G T G T G C C G C C T G A A C G C T G A A C G G G A C C T G C G G C G G G C G T T C A G G C G C T G T T C C T G C T C A G C G C T C A A C T G C A C C A C C G G C A G A G G G G G G T T T A C A C C C A G C G C C G T C A A A T T G A G A A A C G C C G C A C T G G C A C C T G C A G G C C G G T G G A A G G T A C T C C A G C G A G G A G G G G G C G T G G A C C C A G G A C G G C G T G G T C T G G A C G C A G G A G A T C G C C A A A G G T G T G G A G G C A C A G C G G A G C T T C G C C G C C C T T T C A A G C C G C T G G G G C G C C G G G C A G T T C T G C G C C C G G T T C T C C C C T G G A G C G G T G T G G T G C G G C G G G C T G C C C G T C C A T C A G G T T C C T G G G C C C G G C T G C T C C T C G C C A T G G C C T G A
V
G
E
N
E
P
P
D
V
L
T
A
R
A
A
A
S
A
F
D
S L F P G L G V V A L A V G A V G A A N I M I V S V L E R R S E I G L R R G L G A A R G Q I R T Q F L A E S V L L S I M G G V A G V L P G A V A T A V Y A S S E G R A A V I P V E A W A G A V A S A I L I G A F A G L I P A I Q A S R M P P T V A L R T R Y A H D K R V C R L N A E R D L R R A F R R C S C S A L N C T T G R G G F T P S A V K L R N A A L A P A G R W K V L Q R G G G V D P G R R G L D A G D R Q R C G G T A E L R R P F K P L G R R A V L R P V L P W S G V V R R A A R P S G S W A R L L L A M A * |
Maingene=Deiho_00064720; Extension FAILED; Comments=Pseudogene, failed extension, extended gene >100aa and >50% and <70% median/second shortest homolog, Blast redone with 250 hits and e-05, extended gene <70% median/second shortest homolog | |
| Deiho_00064760 - Deiho_00064780 | 277573 | 278153 | join (277573..277788, 277787..277984, 277983..278153) | pseudogene, missed gene |
t
t
g
a
t
g
c
g
t
g
a
t
g
c
c
c
g
g
c
t
c a c g t a c t t c c a a c g c t c t g c a a a a c a c g c g c t g t g g a a c g c c t a c c t g c t t c g g g a g t t g c c t g g c c t c c a c g a a c a a c t g g a c c a g g a c t g g g c g g g a g a a c t a c g c g c t g c g c t g c a a c t c g c c t a c c a t c a a c a c a a g g c g g g c a c c c t c g c t c a g g c a g a g a a a a c t g c g t t c c t g a t g c g c t t t g a t a c a c a t t c c t g g a a g c g g g g t t g g t c t c c a a c c c c g c g a g g a g a g c c g g t t c c c g a g c g g c g g g g a c g g g t g a a g c a g t c c c c g g g g c g c a a c c t c g c c c t t c g a t g t c a g a a g c a c c g g g a c a a g g t g c t g t g c t t t c t c c a g g a g g a c g g c g t a c c g t t c g a c a a c a a c c a a g c c g a g c g a g a c a t a g g g a t g g t g c g t g t g a a g c g a a a g a t g t c c g g t g g c g g c c g c t c c g c t g t g g g t g g a a a g a a t t t c t g c c g c a t t c g c a g t t g c c t c t c c a a a c t t c a g a a g c a a g g c t t c t c g a t t t a t a a a g g t t t g g t t g g c g t c t t c c g g a a c g a g g c g c t t c t t c c t c g g c t c t c g t t c t c g t g c t g a
L
M
R
D
A
R
L
T
Y
F
Q
R
S
A
K
H
A
L
W
N
A Y L L R E L P G L H E Q L D Q D W A G E L R A A L Q L A Y H Q H K A G T L A Q A E K T A F L M R F D T H S W K R G W S P T P R G E P V P E R R G R V K Q S P G R N L A L R C Q K H R D K V L C F L Q E D G V P F D N N Q A E R D I G M V R V K R K M S G G G R S A V G G K N F C R I R S C L S K L Q K Q G F S I Y K G L V G V F R N E A L L P R L S F S C * |
Comments=Pseudogene, >1 frameshift are present. Found common hit with non-adjoining gene: Deiho_00062810 |
| Deiho_00064790, Deiho_00064800 | 280065 | 280701 | complement (join (280065..280199, 280202..280393, 280393..280701)) | pseudogene |
T
T
G
G
C
A
T
C
A
C
G
G
C
G
G
G
T
T
G
A
G G G T A G G G G T G G C G T G A A G T T C A C G C C A C C C C C C T G C G A T A C C G T G C A G A T T C A C T C C A G C G C T G C G C C T T A C A C C G A G G T C G T G C A G C C G T C C A A C C G G G G C C T G C C C C T C A A G A G C A T C C G G G T G G T G G G A G T C C C C G G C C T G A A T G G T G A G C T C C C C G C G C T G G A C G G C G C G G G C G C G G T G G A G C C G A A C A C C C T G G C C T A C A C C A A T C C C G T G T T C G A C A A C C T G G G C A T G C T G C T G G T C C T G C C C C C C A C G G G A C G G G A G C G G T A T A C G G C C A C A A G C C C G G C C C A C C T C G A A A T C A C G A A C C T G G A A A T C C G C G A C G C G A G C A A G C G C A A C A C C C T G G T C A A C C G G G C G G G G C A G A C C A C C G T C T G G G A C A G T T T T G G C A G C G G C A T C T A C A T C G A G C G G G C C G A A C A C A T G G T G A T C C G G G G A T G C A A G C T G C A C G A C A A T G G C G A C G G C C T G T T T C A G A A C G C C A A G T C C G T G G C G G C G C A G A G C C G G G A C C T G C T G G C G G A G G G C A A C A C C T T C T T C A G C A A C G G C A A C C C G T C C A G C G C T C A C G A A C A C A A C G C C G A C A G C G A G G G C G T G G G C A C C A T C T C A C A G T A C A A C C T C C T C G G G C C C T G A
L
A
S
R
R
V
E
G
R
G
G
V
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F
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P
P
C
D
T V Q I H S S A A P Y T E V V Q P S N R G L P L K S I R V V G V P G L N G E L P A L D G A G A V E P N T L A Y T N P V F D N L G M L L V L P P T G R E R Y T A T S P A H L E I T N L E I R D A S K R N T L V N R A G Q T T V W D S F G S G I Y I E R A E H M V I R G C K L H D N G D G L F Q N A K S V A A Q S R D L L A E G N T F F S N G N P S S A H E H N A D S E G V G T I S Q Y N L L G P * |
Comments=Pseudogene, > 2 frameshifts in gene |
| Deiho_00064810 - Deiho_00064860 | 284650 | 284882 | complement (join (284650..284691, 284691..284882)) | pseudogene, missed gene |
A
T
G
C
T
G
G
G
G
A
T
G
A
C
C
C
A
G
G
C
G C C A A C G G C G G T C C T G T A C C C G C T G A A G T A T G C C G T T C C C C T G C C T G G A A G T G G A A A A A C G C G G T A C C A G C G T C T T G A G A A C A T G C C A T T C T C G T T G C C C G A A G C G C T G T C C C C G C G C T T T G C C G T G T T C T T G C C C C C G G A G G G C G A A C T C G G C C T G A T T C C C G A C C A A T C A A A C T G G A G A T T C G G A C A G C G T G A C G T C A A C G C G C T T C T G C T G
M
L
G
M
T
Q
A
P
T
A
V
L
Y
P
L
K
Y
A
V
P
L P G S G K T R Y Q R L E N M P F S L P E A L S P R F A V F L P P E G E L G L I P D Q S N W R F G Q R D V N A L L L |
Comments=Pseudogene, start/stop is absent |
| Deiho_00064910, Deiho_00064910 - Deiho_00064920 | 292656 | 293063 | putative pseudogene |
A
T
G
A
A
C
A
C
G
C
C
C
T
G
G
C
C
C
G
T
C A T G G C G A T C A A A G T G C A T G A C G C G G A C A T T T G G A G G C G G C C C G G T C C T C C T C C T G C G G G G A G T G C C G A A C G C C T T T C C C C G A A A G A G A C A C C T G C G G G C A G A T G C G G G A T A C A C C G G G A A A C A G G G A A C G C T G C T G G G C T G A A C G C C G G A G A C C G T G A A G C G T C C C T G G T C A G G C C G G C C G A G C A C C T G G G C A C C A A A G C G C C T C C G C G C G T C G C C G G A G T G C C C A C G G G A T T C G C G G T A T G G A A A C G G C G G T G G G C C G T G G A G C G G A G C T T T G C C T G G C C C T G G A A A T C A G G G G G C A T G G T G G G G G A C G G C G A G G C G C T G C C G G A A A C A G C G G A A C A C C T C C T C T A C G A G G T G A T G G T T T G C C G C T T G G C C A A A C G T T C A C C C T G A
M
N
T
P
W
P
V
M
A
I
K
V
H
D
A
D
I
W
R
R
P G P P P A G S A E R L S P K E T P A G R C G I H R E T G N A A G L N A G D R E A S L V R P A E H L G T K A P P R V A G V P T G F A V W K R R W A V E R S F A W P W K S G G M V G D G E A L P E T A E H L L Y E V M V C R L A K R S P * |
Maingene=Deiho_00064910; Extension FAILED; Comments=For manual analysis, pseudo, failed extension, extended gene >100aa and >50% and <70% median/second shortest homolog, Blast redone with 250 hits and e-05, extended gene <70% median/second shortest homolog | |
| Deiho_00064920, Deiho_00064920 - Deiho_00064940 | 293492 | 295178 | complement (join (293492..294565, 294567..295178)) | putative pseudogene |
A
T
G
A
C
G
A
A
G
C
C
C
C
C
T
G
C
C
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L V T H A G S V V W Y C P G R F D A P P L L A G L L D A E R G G E W W V A G A A P R R R S Y L G E S G V L E T Q V D T P D G E V T L V D F M P Y G P G L P R G V C R L V G G A G G A A L L L R A A P N D A R Y P P L L A Q E G G A V Q I D R D C W L S A S H P L Q V E D G A V R L R V P A G A S G W A F L G E Q L P E Q A N P E A W L E A T L T A W R G V A S E T V Y S G P Y G R R S A P P C G P L R L L T F E E T G S V V S A A T T S L P E V I G G E R N Y D Y R Y V W F R D S G M I V R A L S R L S P G D H G T L A R G F L D F V C R S A S G R D L E R P L P P L A T V L A E D A P G V E E L A L A G Y R G S R P V R R G N A A A T Q V Q L D V Y G N I L L S S A A L Y R P A E L E E H W G V L G P V G E Y L C A H W R D P D N G I W E E E E P L P Y L S S K V L G A V G L E Q L A A L H P D P A T A R R W R A V A G D I R A W V A E H G L T G E G A F A A V A G E D A V D V V A A L Y P I W G Y C A P D T P E M R A T L Q A L D R D W R R D G L Y W R V L R E R D T G E G A F L A G T L W V A L Y W T A V D P A R A R E L L E T V L T Y A N D L G L I A E E A D P A T G T L L G N F P Q T F V H A A V L G V I A E L * |
Maingene=Deiho_00064920; Extension SUCCEEDED with start of type START; Comments=For manual analysis, pseudo or ribosomal slippage, gene with one frameshift, >80% median/second shortest homolog |
| Deiho_00001160, Deiho_00001160 - Deiho_00001170 | 108971 | 2147483647 | pseudogene |
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A G G G A A G G T C G C C C G G C T T A G C C C T C C T C C G C C G T T T G G C C C A T G C C T C C C T G A C G C C C G C C C T G C A C A C T G T G G C C A T G A C G A C G C A G A C G C T G A C C G T G A C C C C T T T C G A C C C T C A G G C T G C G T C G C A G G A G G C G C G G C T C G C G G T G G C G C A G C T T C T C G T C G C C G C C C A T G G G T T C G C C T A T C C C G A C G A T C C C C G C C T G A T T C C A G A G C G C G A G A T C G C C T T T T T G T C G C A C G T C T C T C C C G A T G A C G C C A T G C G G C A G T T C G C G G T G T G G G A C G G C G C G G C A G C G C T T G G C T G G G C G C G G A T C G A C T A C G G C C T G A A G G A G A A C C T G C A C G C C G C G C A C G C C C G C C T C A T C G T T C A C C C G G G G C A C C G G C G C C G G G G G C T G G G A C G T G A A C T G G C C C G T G C T G T G G A G A C C G C T G C C C A G G C C G A A G G C C G C C G C C T C A T C A C C T T C G G C A C C A C G A A C A A G G T G C C C G C C G G G G A A G C C T T C G C C C G C T G G C T G G G A G C T G A G C C C G C C T T G C C G A T G C G C C A G A G C C A G C T G C T G C T G G A C G A G G T A C C G G G C G A G C T G C T G A A C G C C T G G A C G G C C C G C C C C G A C G G T G A G C C C T A C C G C C T G C A C G T C T G G A C C C G C A T C C C G G G C G A G T T C C T G A C C C G C G C C G C C G A C A T G A T G A T G G T G A T G A A C A C C G C G C C C C G G G G C G A C C T G G A C G T G G A G G A C T G G A C G G T G A C G C C C G A G A T G A T C C G T T C G T G G G A G A A G A T G A T T G A G G A G G G C G G C G A G G T C C G C T G T C T G A T G G C G C T G G A A G A C A C C C G C A C G G G C G A A C T T A C C G G A T A C A G C G A G A C G T T C T G G T C T C C G G A A C G C G C C C C C C T G G T G T T T C A G G G G G C C A C C G C C G T C C G G C C C T C C G C C C G T G G G C A G G G C C T G G G C A A G T G G C T C A A G G C C G A G A T G G T C C G G C A C C T G C G C C G G A A C T G C C C C G G A G C C C G T T T C G T C C G C A C C A A C A A C G C G G A T G A G A A C G C G G C C A T G C T G G G C A T C A A C G T G G C G A T G G G C T T C A C G C C C T G G G G C A C C T T C A C C G A G T G G C A A C G G C G G C T G G G G C C T G T G G C T G C C T G T T C C T G A G G G C C C A A C C G G T C A A G A G G A C C C C G C C C G C G C C G A G G G C C A G C G T G A C C C C A G C C A T C C C C G A T C C A C C G A T C A G T C C A C C C A G T G G C A C C C G C A G C G C C G C A A T C C A C T T G G A T A C C G T G A A C A C C T G C C C G T G A A C G G C G A G A T A C G C G C C C C G C C G G T C C T C G G G C A C C A G T T C G G C C A G C G C C G A T T G C C A T G T G G G C A C G T A C A G C A A T T C T C C C A G G C T C A G C G C C A G C G T T C C C A G C A G C A C G G G G A G G C T G G T G C T A A A C G C C A T A A C G G C A A A G C C C A G G G C G A A G A G G G C G A A A C C T G C G T A C A T G A C G G G C C G T T C C T C T C G T C C C T T C A G C C A C G C C G C C A C C G G A G C C G T G A G C G C C A C G A T C A G C A A G G T A T T T A C G G C G G T C A G C A C G C T C A T G G C C T T G A T G C C G T C C A G C C A T A C A C C G A A C C A C T C C G A G G C G G C A A A A T T T T G C G C G A G G T G A A C C G C G A C G T G G T T G T T G C G C G A A A A C T C G G T G C T C A G A A T C A G G A T G C C G C C C G C C A C G A A C A G T C C G A A C G C C C G G T C C C G C A C C A C C T G C G C G T A G G A G C G G G C C A G C G G C G C G A G G C C C A G T T C C G C C C G C G C G G T G G G A G A A G C G G C C C G C G T T T C C G T C A T C T G C G T C C A G C A C A G G G C A G A G G T A A T G A G T G A C A T C C C G A C G A G C A G C C C C A G C A A G A G C G T G A A G T G G T C C G C G T A C A G C C A C C C G C C C G C C A C G G T G C C C A G G A G G A T G C T C A G G T T C A C G G C C C A G C A G T T C G C G G C G T A C A T G A A G G A G C G C G A C T T G G G C G T G C T C A C G T C C A C C A G C A T G G C C T C G G C C G C T G G G T T G A T C A G C C C G C T C G C C A C G T T G A C C A G C A C C A C T G C C G C G A A G G T G G C C C A G G G G T G A G G G C C G T T T C C G T T C G C C G C G A G C A T T G C C G C A A A G G C C A G C A A C T T C A G T C C C T C G C C C G T C A G C A G G G T G C G G C G G C C C C A G G C A T C G G C C A G G G C A C C A C C G T A C A G C C C G G C G A G A A A C T G C A C C A C G C C C A G C G T C A G C A G C A G C G T G C C T G C C A G C G C C G C A C C C A G A T G C G C C G T G A A G T A G A T T G C C A G G A A G G G A A A C A C C A T G C T G C C C A C C A C C C G G C T G A G A A A C G A C G T G G T G A T G C G C G T A C G G A C A T T G G G A T G C A G G G T G C G C C A C A T A G G G G G C A G T C T C G C G C C C G T C A A C A G G G G G A A A A A G A G G C A G A G T G G G A C G T A G A T G A C C C C T T T T C A T A C C C T C C A A C C C G G C T G G G T A T A T C T C A C C C T G C G G G C C G C C C T G C A T G C G C G A G A C G G G G T G C G A G C G A G C C A T G C G G G G A C G G C G A C G G A A T T G A C C A C G T G G T G G G C C T G C A G C G G A A A A A C G G C G C G G C G G C A C C T C G C C C G C T T G G G G G A G G A G G G G C G G G T G A A T T A C G C G C C G G G A C G C G G G C G G G G C A A C A C G T C G C G G T T G A C G T T T T C G G C G G A C T T A C G G G A A G A A C T G G A G G C C C T G A C G G A G G C T C T G G C C G G C C A G G G C A T G G C G G G C G A A C T C G C A C G G C T C T C C C G T C T G C C C T T T C C C C G C G C C T G G G T G C T G A C A G A G G C G G C G C G G G G T G T G T T C G G C T T G G G C G A G G C G C G G C C C G G G G T G G A C C G G C T G C G G A C C G T C T A T A C C C G G G A C C T C A C C T C G C T G G A C C C C C T G C A C G C G A G C G C C A C G A T G G A G G C G C A C C T G C T C G C C C A G G T C C T C G A T C C C C T C G T G C A C T T C G A T C C C G A T A C G G G C G C A G C C G C G C C C C A C C T G G C G C A C C A C T G G A A C C C T G C G G A G G A C G G C C T G C G C T G G A C C T T C C A C C T G C G G A A G G G C G T G G C A T T T C A C C A C G G A C G G A C G C T G G A C G C G G G C G A C G T A C G G G C C A C A C T G G A G C G G G T G C A G G C G G G G G C G G C G T G G T T C C T C C C C G G T C T G G A G G C G G T G G A G G A G G C C G G G C C G T A C G C G G T G C G C C T C C A C C T C T C C C G C C C G G A C G C C T T C T T G C C G C G C C G C C T G G C C G A T A C G C A G G C C C T G A T C C T G C C G C G T G A C G T G C C C T T C G A C G A G G C G A G G C C C G T G G G C A C C G G A G C G T T T T G C T G G A C G C C G C T G G A G G G A G G T T T C C G C C T C A G C G C C T T C G A C G |