Spirochaeta smaragdinae DSM 11293, Contig 531
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4331 predicted CDSs,
77 long genes,
103 short genes,
60 broken genes,
52 interrupted genes,
99 intergenic regions with hits,
391 total anomalies.
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Gene prediction anomalies
Chart?chtt=&chs=400x180&chd=s:abaaaaa9&cht=p3&chl=long-1%%7cshort-2%%7cunique-0%%7cdubious-0%%7cbroken-1%%7cinterrupted-1%%7cambiguous-0%%7cok-95% 		Anomaly distribution
Chart?chtt=&chs=500x180&chd=s:s9je6&cht=p3&chl=long-19%%7cshort-26%%7cbroken-15%%7cinterrupted-13%%7cputative+missed-25%
Defectlist
Alns
  1. or0006-or0007
    • Intergenic region with hits
  2. or0027-or0028
    • Intergenic region with hits
  3. or0034
    • SHORT
  4. or0056
    • SHORT
  5. or0074
    • Broken gene with or0074  or0075 
    • Interrupted gene with or0075 
    • Overlap with or0075(43)
  6. or0075
    • Broken gene with or0074  or0075 
    • Interrupted gene with or0074 
    • Overlap with or0074(43)
  7. or0092
    • LONG
  8. or0099
    • LONG
  9. or0106-or0107
    • Intergenic region with hits
  10. or0107
    • SHORT
  11. or0108-or0109
    • Intergenic region with hits
  12. or0122-or0123
    • Intergenic region with hits
  13. or0124-or0125
    • Intergenic region with hits
  14. or0154-or0155
    • Intergenic region with hits
  15. or0155
    • LONG
  16. or0163
  17. or0164
  18. or0167
    • LONG
  19. or0170
    • SHORT
  20. or0171
    • SHORT
  21. or0173
    • LONG
  22. or0187-or0188
    • Intergenic region with hits
  23. or0188
    • LONG
  24. or0202
    • Broken gene with or0202  or0203 
    • Interrupted gene with or0203 
    • Overlap with or0203(55)
  25. or0203
    • Broken gene with or0202  or0203 
    • Interrupted gene with or0202 
    • Overlap with or0202(55)
  26. or0208
    • Overlap with or0207(90)
  27. or0223
    • SHORT
  28. or0235
    • LONG
  29. or0242
    • LONG
  30. or0244
    • SHORT
  31. or0258
    • Overlap with or0259(40)
  32. or0259
    • Overlap with or0258(40)
  33. or0272-or0273
    • Intergenic region with hits
  34. or0273
    • SHORT
  35. or0299
    • SHORT
  36. or0299-or0300
    • Intergenic region with hits
  37. or0300
    • SHORT
  38. or0302
    • LONG gene with <100 nt promoter
  39. or0342
    • SHORT
  40. or0344
    • LONG gene with <100 nt promoter
  41. or0357
  42. or0358
  43. or0368
    • SHORT
  44. or0372
    • SHORT
  45. or0390
  46. or0391
  47. or0405-or0406
    • Intergenic region with hits
  48. or0412
    • SHORT
  49. or0413-or0414
    • Intergenic region with hits
  50. or0416-or0417
    • Intergenic region with hits
  51. or0417-or0418
    • Intergenic region with hits
  52. or0420-or0421
    • Intergenic region with hits
  53. or0421
    • SHORT
  54. or0425-or0426
    • Intergenic region with hits
  55. or0426-or0427
    • Intergenic region with hits
  56. or0428
  57. or0429
  58. or0441
    • SHORT
  59. or0442-or0443
    • Intergenic region with hits
  60. or0443
    • SHORT
  61. or0514
    • SHORT
  62. or0524-or0525
    • Intergenic region with hits
  63. or0525
    • LONG
  64. or0535
    • SHORT
  65. or0539
    • Interrupted gene with or1492 
  66. or0545-or0546
    • Intergenic region with hits
  67. or0580
    • SHORT
  68. or0587
    • LONG gene with <100 nt promoter
  69. or0612
    • SHORT
  70. or0620-or0621
    • Intergenic region with hits
  71. or0635
    • SHORT
  72. or0654
    • SHORT
  73. or0659-or0660
    • Intergenic region with hits
  74. or0661
    • LONG
  75. or0691
  76. or0694
    • SHORT
  77. or0694-or0695
    • Intergenic region with hits
  78. or0698-or0699
    • Intergenic region with hits
  79. or0700-or0701
    • Intergenic region with hits
  80. or0703-or0704
    • Intergenic region with hits
  81. or0732
    • LONG
  82. or0732-or0733
    • Intergenic region with hits
  83. or0742
    • Interrupted gene with or2982 
  84. Newfeat4
    • Overlap with or0766(34)
  85. or0766
    • Overlap with Newfeat4(34)
  86. or0790
    • SHORT
  87. or0794
    • SHORT
  88. or0803
    • LONG
  89. or0836
    • SHORT
  90. or0844-or0845
    • Intergenic region with hits
  91. or0865
    • Interrupted gene with or3449 
  92. or0878
    • LONG gene with <100 nt promoter
  93. or0879
    • LONG gene with <100 nt promoter
  94. or0939
    • SHORT
  95. or0972-or0973
    • Intergenic region with hits
  96. or0979-or0980
    • Intergenic region with hits
  97. or1002-or1003
    • Intergenic region with hits
  98. or1027
    • LONG
  99. or1037
    • LONG gene with <100 nt promoter
  100. or1048
    • LONG
  101. or1050
    • Overlap with or1051(33)
  102. or1051
    • Overlap with or1050(33)
  103. or1061
    • LONG
  104. or1068
    • SHORT
  105. or1074
    • Overlap with or1079(1125243)
  106. or1075
    • Overlap with or1080(1126109)
  107. or1076
    • Overlap with or1080(1126795)
  108. or1077
    • Overlap with or1080(1127820)
  109. or1078
    • Overlap with or1080(1128125)
  110. or_CrispR1
    • CrispR or_CrispR1 CRISPR + 1128280 1133403 rpt_unit_range="1128280..1128312"
  111. or_CrispR1-or1081
    • Intergenic region with hits
  112. or1087-or1088
    • Intergenic region with hits
  113. or1088
    • SHORT
  114. or1093-or1094
    • Intergenic region with hits
  115. or1095
  116. or1096
  117. or1101
  118. or1102
  119. or1118
    • LONG
  120. or1118-or1119
    • Intergenic region with hits
  121. or1126
    • LONG
  122. or1140
    • Overlap with or1141(31)
  123. or1141
    • Overlap with or1140(31)
  124. or1161
    • LONG
  125. or1166-or1167
    • Intergenic region with hits
  126. or1167
    • SHORT
  127. or1220
    • SHORT
  128. or1227
    • SHORT
  129. or1237
    • Overlap with or1238(43)
  130. or1238
    • Overlap with or1237(43)
  131. or1244
    • SHORT
    • Overlap with or1245(52)
  132. or1245
    • Overlap with or1244(52)
  133. or1274
    • LONG
  134. or1277
  135. or1278
  136. or1281
  137. or1313
    • LONG gene with <100 nt promoter
  138. or1323
    • LONG
  139. or1330
  140. or1330-or1331
    • Intergenic region with hits
  141. or1331
  142. or1340
  143. or1341
  144. or1343
    • SHORT
  145. or1389
    • Overlap with or1390(31)
  146. or1390
    • Overlap with or1389(31)
  147. or1437
    • LONG
  148. or1441
    • Broken gene with or1441  or1442 
    • Interrupted gene with or1442 
    • Overlap with or1442(49)
  149. or1442
    • Broken gene with or1441  or1442 
    • Interrupted gene with or1441 
    • Overlap with or1441(49)
  150. or1442-or1443
    • Intergenic region with hits
  151. or1444
    • LONG
  152. or1450
    • SHORT
  153. or1462-or1463
    • Intergenic region with hits
  154. or1463
    • SHORT
  155. or1470
    • Overlap with or1471(37)
  156. or1471
    • Overlap with or1470(37)
  157. or1492
    • Interrupted gene with or0539 
  158. or1503
    • SHORT
  159. or1505
    • LONG gene with <100 nt promoter
  160. or1521
    • SHORT
  161. or1534-or1535
    • Intergenic region with hits
  162. or1535
    • SHORT
  163. or1602
    • Overlap with or1603(58)
  164. or1603
    • SHORT
    • Overlap with or1602(58)
  165. or1616
    • SHORT
  166. or1617
    • Overlap with or1618(40)
  167. or1618
    • Overlap with or1617(40)
  168. or1660
    • LONG
  169. or1667
    • LONG
  170. or1671
    • SHORT
  171. or1705
  172. or1706
  173. or1718
    • SHORT
    • Overlap with or1719(34)
  174. or1719
    • Overlap with or1718(34)
  175. or1736-or1737
    • Intergenic region with hits
  176. or1747
    • Overlap with or1748(80)
  177. or1748
    • Overlap with or1747(80)
  178. or1758-or1759
    • Intergenic region with hits
  179. or1761
    • Overlap with or1762(31)
  180. or1762
    • Overlap with or1761(31)
  181. or1784
    • SHORT
  182. or1796
    • LONG
  183. or1804
    • Broken gene with or1803  or1804 
    • Overlap with or1803(40)
  184. or1814
    • SHORT
  185. or1817
    • LONG
  186. or1859
    • SHORT
  187. or1864
    • LONG
  188. or1916
    • Overlap with or1917(42)
  189. or1917
    • Overlap with or1916(42)
  190. or1924-or1925
    • Intergenic region with hits
  191. or1943
    • SHORT
    • Overlap with or1944(58)
  192. or1944
    • Overlap with or1943(58)
  193. or1951
    • SHORT
  194. or1966
    • LONG
  195. or1968-or1969
    • Intergenic region with hits
  196. or1971
    • SHORT
  197. or1971-or1972
    • Intergenic region with hits
  198. or1983
    • SHORT
  199. or1987-or1988
    • Intergenic region with hits
  200. or2007
    • SHORT
  201. or2028
    • LONG
    • Overlap with or2029(60)
  202. or2029
    • Overlap with or2028(60)
  203. or2038
    • SHORT
  204. or2074
  205. or2088
    • SHORT
  206. or2090
  207. or2091
  208. or2105-or2106
    • Intergenic region with hits
  209. or2163-or2164
    • Intergenic region with hits
  210. or2164
    • SHORT
  211. or2178-or2179
    • Intergenic region with hits
  212. or2207-or2208
    • Intergenic region with hits
  213. or2209-or2210
    • Intergenic region with hits
  214. or2214-or2215
    • Intergenic region with hits
  215. or2215
    • Overlap with or2216(39)
  216. or2216
    • Overlap with or2215(39)
  217. or2218-or2219
    • Intergenic region with hits
  218. or2224
    • Overlap with or2225(37)
  219. or2225
    • Overlap with or2224(37)
  220. or2239
    • SHORT
  221. or2253-or2254
    • Intergenic region with hits
  222. or2284
    • LONG
  223. or2292
    • Overlap with or2293(46)
  224. or2293
    • Overlap with or2292(46)
  225. or2295
    • SHORT
  226. or2295-or2296
    • Intergenic region with hits
  227. or2297
    • LONG
  228. or2316-or2317
    • Intergenic region with hits
  229. or2317
    • SHORT
  230. or2333
    • SHORT
  231. or2343
  232. or2344
  233. or2354
    • SHORT
  234. or2355
    • LONG
  235. or2362
    • SHORT
  236. or2384
    • LONG
  237. or2388
    • SHORT
  238. or2403
  239. or2404
  240. or2429
    • SHORT
  241. or2430
    • Overlap with or2431(42)
  242. or2431
    • Overlap with or2430(42)
  243. or2440
    • Interrupted gene with or2442 
  244. or2441
    • Overlap with or2442(145)
  245. or2442
    • Interrupted gene with or2440 
    • Overlap with or2441(145)
  246. or2493
    • Overlap with or2494(82)
  247. or2494
    • Overlap with or2493(82)
  248. or2501
    • SHORT
  249. or2502
    • Overlap with or2503(37)
  250. or2503
    • Overlap with or2502(37)
  251. or2530
    • Overlap with or2531(55)
  252. or2531
    • Overlap with or2530(55)
  253. or2567-or2568
    • Intergenic region with hits
  254. or2568
    • SHORT
  255. or2573-or2574
    • Intergenic region with hits
  256. or2574-or2575
    • Intergenic region with hits
  257. or2575-or2576
    • Intergenic region with hits
  258. or2576-or2577
    • Intergenic region with hits
  259. or2588
    • SHORT
  260. or2596
    • LONG
  261. or2605
    • SHORT
  262. or2651-or2652
    • Intergenic region with hits
  263. or2652
    • SHORT
  264. or2673-or2674
    • Intergenic region with hits
  265. or2674
    • SHORT
  266. or2674-or2675
    • Intergenic region with hits
  267. or2679
  268. or2680
  269. or2681
  270. or2682
  271. or2695
    • Overlap with or2696(40)
  272. or2696
    • Overlap with or2695(40)
  273. or2700
    • SHORT
  274. or2738-or2739
    • Intergenic region with hits
  275. or2749
    • SHORT
  276. or2749-or2750
    • Intergenic region with hits
  277. or2750
    • SHORT
  278. or2784
    • Overlap with or2785(94)
  279. or2785
    • Overlap with or2784(94)
  280. or2819
    • Overlap with or2820(40)
  281. or2820
    • Overlap with or2819(40)
  282. or2825
    • Broken gene with or2825  or2826 
    • Interrupted gene with or2826 
    • Overlap with or2826(61)
  283. or2826
    • Broken gene with or2825  or2826 
    • Interrupted gene with or2825 
    • Overlap with or2825(61)
  284. or2849
    • LONG
  285. or2850
    • LONG
  286. or2873
  287. or2873-or2874
    • Intergenic region with hits
  288. or2874
  289. or2941
    • Overlap with or2942(34)
  290. or2942
    • Overlap with or2941(34)
  291. or2953
    • LONG
  292. or2954
    • LONG
  293. or2979
    • SHORT
  294. or2982
    • Interrupted gene with or0742 
  295. or2999
  296. or3000
  297. or3028
  298. or3035
    • Overlap with or3036(31)
  299. or3036
    • Overlap with or3035(31)
  300. or3049
    • LONG
  301. or3049-or3050
    • Intergenic region with hits
  302. or3055
    • LONG
  303. or3064-or3065
    • Intergenic region with hits
  304. or3065
    • SHORT
  305. or3066
    • LONG
  306. or3094
    • SHORT
  307. or3105
    • LONG
  308. or3114
    • Overlap with or3115(74)
  309. or3115
    • Overlap with or3114(74)
  310. or3121
    • SHORT
  311. or3124-or3125
    • Intergenic region with hits
  312. or3125-or3126
    • Intergenic region with hits
  313. or3147
    • LONG
  314. or3147-or3148
    • Intergenic region with hits
  315. or3154
    • Broken gene with or3154  or3155 
    • Interrupted gene with or3155 
    • Overlap with or3155(43)
  316. or3155
    • Broken gene with or3154  or3155 
    • Interrupted gene with or3154 
    • Overlap with or3154(43)
  317. or3193
    • SHORT
  318. or3195-or3196
    • Intergenic region with hits
  319. or3203
    • LONG
  320. or3210
    • SHORT
  321. or3220
    • Overlap with or3221(40)
  322. or3221
    • Overlap with or3220(40)
  323. or3234
    • SHORT
  324. or3252-or3253
    • Intergenic region with hits
  325. or3269
    • SHORT
  326. or3284
    • LONG
  327. or3293
    • Interrupted gene with or0865 
  328. or3302
    • LONG
  329. or3311
    • SHORT
  330. or3313
    • SHORT
  331. or3328
    • LONG
  332. or3341
    • LONG
  333. or3346
    • LONG
    • Overlap with or3347(73)
  334. or3347
    • Overlap with or3346(73)
  335. or3355
    • Overlap with or3356(109)
  336. or3356
    • Overlap with or3355(109)
  337. or3361
  338. or3362
  339. or3367-or3368
    • Intergenic region with hits
  340. or3389-or3390
    • Intergenic region with hits
  341. or3390-or3391
    • Intergenic region with hits
  342. or3391
    • LONG
  343. or3397-or3398
    • Intergenic region with hits
  344. or3401
    • LONG
  345. or3403
    • SHORT
  346. or3403-or3404
    • Intergenic region with hits
  347. or3418
    • Interrupted gene with or3877 
  348. or3419
    • SHORT
  349. or3419-or3420
    • Intergenic region with hits
  350. or3420
    • SHORT
  351. or3430-or3431
    • Intergenic region with hits
  352. or3449
    • Interrupted gene with or0865 
  353. or3450
    • Overlap with or3451(37)
  354. or3451
    • Overlap with or3450(37)
  355. or3453
    • LONG
  356. or3466
    • SHORT
  357. or3480-or3481
    • Intergenic region with hits
  358. or3509
    • LONG
  359. or3524
    • Interrupted gene with or3418 
  360. or3579
    • SHORT
  361. or3589
    • Overlap with or3590(55)
  362. or3590
    • Overlap with or3589(55)
  363. or3591
    • SHORT
  364. or3602
    • LONG
  365. or3620
    • Overlap with or3619(39)
  366. or3636-or3637
    • Intergenic region with hits
  367. or3638
    • Broken gene with or3638  or3639 
    • Overlap with or3639(31)
  368. or3639
    • Broken gene with or3638  or3639 
    • Overlap with or3638(31)
  369. or3649
    • SHORT
  370. or3649-or3650
    • Intergenic region with hits
  371. or3662
    • SHORT
  372. or3662-or3663
    • Intergenic region with hits
  373. or3684
    • LONG
  374. or3698
    • Overlap with or3699(49)
  375. or3699
    • Overlap with or3698(49)
  376. or3701
    • SHORT
  377. or3714
    • Overlap with or3715(85)
  378. or3715
    • Overlap with or3714(85)
  379. or3715-or3716
    • Intergenic region with hits
  380. or3741
    • LONG
  381. or3753
  382. or3758
  383. or3776
    • LONG
  384. or3808
    • LONG
  385. or3846
    • Overlap with or3847(127)
  386. or3847
    • Overlap with or3846(127)
  387. or3850
    • LONG
  388. or3850-or3851
    • Intergenic region with hits
  389. or3855
    • Overlap with or3856(34)
  390. or3856
    • SHORT
    • Overlap with or3855(34)
  391. or3870
    • LONG
  392. or3877
    • Interrupted gene with or3418 
  393. or3882
    • SHORT
  394. or3882-or3883
    • Intergenic region with hits
  395. or3889
    • Overlap with or3890(52)
  396. or3890
    • Overlap with or3889(52)
  397. or3898
    • SHORT
  398. or3927
    • Overlap with or3928(67)
  399. or3928
    • Overlap with or3927(67)
  400. or3942
    • LONG
  401. or3975
    • SHORT
  402. or4011
    • LONG
  403. or4042
    • SHORT
  404. or4073
    • SHORT
  405. or4074
    • SHORT
  406. or4075-or4076
    • Intergenic region with hits
  407. or4081
    • SHORT
  408. or4084
    • Overlap with or4085(43)
  409. or4085
    • Overlap with or4084(43)
  410. or4098
    • LONG
  411. or4109-or4110
    • Intergenic region with hits
  412. or4119-or4120
    • Intergenic region with hits
  413. or4145
    • SHORT
  414. or4148
    • LONG
  415. or4154
    • SHORT
  416. or4159
    • Overlap with or4160(40)
  417. or4160
    • Overlap with or4159(40)
  418. or4165
    • LONG
  419. or4165-or4166
    • Intergenic region with hits
  420. or4183-or4184
    • Intergenic region with hits
  421. or4188-or4189
    • Intergenic region with hits
  422. or4196-or4197
    • Intergenic region with hits
  423. or4197-or4198
    • Intergenic region with hits
  424. or4201
  425. or4202
  426. or4227
  427. or4228
  428. or4229
  429. or4232
    • SHORT
  430. or4255-or4256
    • Intergenic region with hits
  431. or4257-or4258
    • Intergenic region with hits
  432. or4260
    • LONG
  433. or4265
    • Overlap with or4266(43)
  434. or4266
    • Overlap with or4265(43)
  435. or4280
    • LONG
    • Overlap with or4281(36)
  436. or4281
    • Overlap with or4280(36)
  437. or4302
    • SHORT
  438. or4302-or4303
    • Intergenic region with hits
  439. or4309
    • LONG
  440. or4330
    • LONG
Click on an anomaly in the left bar to view the associated alignment.