Lactobacillus jensenii, Upgraded
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1450 predicted CDSs,
69 long genes,
47 short genes,
26 broken genes,
22 interrupted genes,
42 intergenic regions with hits,
206 total anomalies.
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Gene prediction anomalies
Chart?chtt=&chs=400x180&chd=s:ccaaaaa9&cht=p3&chl=long-4%%7cshort-3%%7cunique-1%%7cdubious-0%%7cbroken-1%%7cinterrupted-1%%7cambiguous-0%%7cok-90% 		Anomaly distribution
Chart?chtt=&chs=500x180&chd=s:9owsk&cht=p3&chl=long-33%%7cshort-22%%7cbroken-12%%7cinterrupted-10%%7cputative+missed-20%
Defectlist
Alns
  1. HMPREF0526_0001
    • SHORT
  2. HMPREF0526_0001-HMPREF0526_0002
    • Intergenic region with hits
  3. HMPREF0526_0002
    • SHORT
  4. HMPREF0526_0012
    • LONG
  5. HMPREF0526_0018-HMPREF0526_0019
    • Intergenic region with hits
  6. HMPREF0526_0019-HMPREF0526_0020
    • Intergenic region with hits
  7. HMPREF0526_0020
    • SHORT
  8. HMPREF0526_0021
    • SHORT
  9. HMPREF0526_0067
    • SHORT
  10. HMPREF0526_0072
    • SHORT
  11. HMPREF0526_0084
    • LONG
  12. HMPREF0526_0086
    • LONG
  13. HMPREF0526_0090
    • LONG
  14. HMPREF0526_0115
    • SHORT
  15. HMPREF0526_0115-HMPREF0526_0116
    • Intergenic region with hits
  16. HMPREF0526_0119
    • LONG
  17. HMPREF0526_0121
  18. HMPREF0526_0122
  19. HMPREF0526_0127
    • SHORT
  20. HMPREF0526_0130
  21. HMPREF0526_0131
  22. HMPREF0526_0148
    • LONG
  23. HMPREF0526_0149
    • Overlap with HMPREF0526_0150(87)
  24. HMPREF0526_0150
    • Overlap with HMPREF0526_0149(87)
  25. HMPREF0526_0174
    • LONG
  26. HMPREF0526_0182
    • Overlap with HMPREF0526_0183(34)
  27. HMPREF0526_0183
    • Overlap with HMPREF0526_0182(34)
  28. HMPREF0526_0193
    • SHORT
  29. HMPREF0526_0195
    • SHORT
  30. HMPREF0526_0195-HMPREF0526_0196
    • Intergenic region with hits
  31. HMPREF0526_0197
    • SHORT
  32. HMPREF0526_0197-HMPREF0526_0198
    • Intergenic region with hits
  33. HMPREF0526_0201
    • LONG
  34. HMPREF0526_0205
  35. HMPREF0526_0206
  36. HMPREF0526_r0002
    • Overlap with HMPREF0526_nc0006(164)
  37. HMPREF0526_nc0006
    • Overlap with HMPREF0526_r0002(164)
  38. HMPREF0526_0245
    • LONG
  39. HMPREF0526_0256
    • LONG
  40. HMPREF0526_0270
    • LONG
  41. HMPREF0526_0286
    • LONG
  42. HMPREF0526_0293
    • LONG
  43. HMPREF0526_0302
    • SHORT
  44. HMPREF0526_0308
    • LONG
  45. HMPREF0526_0313
    • LONG
  46. HMPREF0526_0327
    • SHORT
  47. HMPREF0526_0327-HMPREF0526_0328
    • Intergenic region with hits
  48. HMPREF0526_0330
    • Overlap with HMPREF0526_0331(49)
  49. HMPREF0526_0331
    • LONG
    • Overlap with HMPREF0526_0330(49)
  50. HMPREF0526_0334
    • LONG
  51. HMPREF0526_0344
    • LONG
  52. HMPREF0526_0365
    • SHORT
  53. HMPREF0526_0365-HMPREF0526_t0011
    • Intergenic region with hits
  54. HMPREF0526_0373
    • LONG
  55. HMPREF0526_0377
    • LONG
  56. HMPREF0526_0381
    • LONG
    • Overlap with HMPREF0526_0382(34)
  57. HMPREF0526_0382
    • Overlap with HMPREF0526_0381(34)
  58. HMPREF0526_0393-HMPREF0526_0394
    • Intergenic region with hits
  59. HMPREF0526_0398
  60. HMPREF0526_0399
  61. HMPREF0526_0426
    • LONG
  62. HMPREF0526_0427
    • SHORT
  63. HMPREF0526_0428
    • SHORT
  64. HMPREF0526_0428-HMPREF0526_0429
    • Intergenic region with hits
  65. HMPREF0526_0432
    • LONG
  66. HMPREF0526_0441
    • SHORT
  67. HMPREF0526_0446
    • LONG
  68. HMPREF0526_0463
    • SHORT
  69. HMPREF0526_0468-HMPREF0526_0469
    • Intergenic region with hits
  70. HMPREF0526_0469
    • SHORT
  71. HMPREF0526_0472
    • SHORT
  72. HMPREF0526_0481
  73. HMPREF0526_0481-HMPREF0526_0482
    • Intergenic region with hits
  74. HMPREF0526_0482
  75. HMPREF0526_0485
    • LONG
  76. HMPREF0526_0489-HMPREF0526_0490
    • Intergenic region with hits
  77. HMPREF0526_0505
  78. HMPREF0526_0506
  79. HMPREF0526_0512
    • LONG
  80. HMPREF0526_0525
    • LONG
  81. HMPREF0526_0531
    • LONG
  82. HMPREF0526_0542-HMPREF0526_0543
    • Intergenic region with hits
  83. HMPREF0526_0543
    • SHORT
  84. HMPREF0526_0549-HMPREF0526_0550
    • Intergenic region with hits
  85. HMPREF0526_0550
    • SHORT
  86. HMPREF0526_0560
    • LONG
  87. HMPREF0526_r0005
    • Overlap with HMPREF0526_nc0010(2883)
  88. HMPREF0526_nc0010
    • Overlap with HMPREF0526_r0005(2883)
  89. HMPREF0526_nc0010-HMPREF0526_r0006
    • Intergenic region with hits
  90. HMPREF0526_0582
    • SHORT
  91. HMPREF0526_0588-HMPREF0526_0589
    • Intergenic region with hits
  92. HMPREF0526_0589
    • SHORT
  93. HMPREF0526_0609
    • SHORT
  94. HMPREF0526_0616
    • LONG
  95. HMPREF0526_0621
    • LONG
  96. HMPREF0526_0625
    • SHORT
  97. HMPREF0526_0628
    • SHORT
  98. HMPREF0526_0638
    • Overlap with HMPREF0526_0639(34)
  99. HMPREF0526_0639
    • LONG
    • Overlap with HMPREF0526_0638(34)
  100. HMPREF0526_0651
    • LONG
  101. HMPREF0526_0655
    • LONG
  102. HMPREF0526_0680
    • LONG
  103. HMPREF0526_0681-HMPREF0526_0682
    • Intergenic region with hits
  104. HMPREF0526_0686
    • LONG
  105. HMPREF0526__CrispR1
    • CrispR HMPREF0526__CrispR1 CRISPR + 738383 738616 rpt_unit_range="738383..738419"
  106. HMPREF0526_0695
    • LONG
  107. HMPREF0526_0697-HMPREF0526_0698
    • Intergenic region with hits
  108. HMPREF0526_0698
    • LONG
  109. HMPREF0526_0707
    • LONG
  110. HMPREF0526_0716
    • SHORT
  111. HMPREF0526_t0044-HMPREF0526_0719
    • Intergenic region with hits
  112. HMPREF0526_0719
    • LONG
    • Overlap with HMPREF0526_t0045(1353)
  113. HMPREF0526_t0045
    • Overlap with HMPREF0526_0719(1353)
  114. HMPREF0526_t0045-HMPREF0526_0720
    • Intergenic region with hits
  115. HMPREF0526_0731
    • LONG
  116. HMPREF0526_0731-HMPREF0526_0732
    • Intergenic region with hits
  117. HMPREF0526_0732
    • SHORT
  118. HMPREF0526_0735
  119. HMPREF0526_0735-HMPREF0526_0736
    • Intergenic region with hits
  120. HMPREF0526_0736
  121. HMPREF0526_0747
    • LONG
  122. HMPREF0526_0754
    • LONG
  123. HMPREF0526_0778-HMPREF0526_0780
    • Intergenic region with hits
  124. HMPREF0526_0780-HMPREF0526_0781
    • Intergenic region with hits
  125. HMPREF0526_0790
    • SHORT
  126. HMPREF0526_0793
  127. HMPREF0526_0793-HMPREF0526_0794
    • Intergenic region with hits
  128. HMPREF0526_0794
  129. HMPREF0526_0809
    • LONG
  130. HMPREF0526_0809-HMPREF0526_0810
    • Intergenic region with hits
  131. HMPREF0526_0810
    • SHORT
  132. HMPREF0526_0814
    • LONG
  133. HMPREF0526_0817
    • LONG
  134. HMPREF0526_0831
    • LONG
  135. HMPREF0526_0845
    • LONG
  136. HMPREF0526_0868
    • LONG
  137. HMPREF0526_0881-HMPREF0526_0882
    • Intergenic region with hits
  138. HMPREF0526_0882
    • SHORT
  139. HMPREF0526_0885
    • LONG
  140. HMPREF0526_0886
  141. HMPREF0526_0887
  142. HMPREF0526_0890
  143. HMPREF0526_0891
  144. HMPREF0526_0926
    • SHORT
  145. HMPREF0526_0938
    • LONG
  146. HMPREF0526_0940
    • LONG
  147. HMPREF0526_0942
    • LONG
  148. HMPREF0526_0945
    • SHORT
  149. HMPREF0526_0945-HMPREF0526_0946
    • Intergenic region with hits
  150. HMPREF0526_0958-HMPREF0526_0959
    • Intergenic region with hits
  151. HMPREF0526_0963
    • LONG
  152. HMPREF0526_0981-HMPREF0526_0983
    • Intergenic region with hits
  153. HMPREF0526_1006
    • SHORT
  154. HMPREF0526_1009
    • SHORT
  155. HMPREF0526_1011
    • LONG
  156. HMPREF0526_1030
  157. HMPREF0526_1030-HMPREF0526_1031
    • Intergenic region with hits
  158. HMPREF0526_1031
  159. HMPREF0526_1061
    • LONG
  160. HMPREF0526_1092-HMPREF0526_1093
    • Intergenic region with hits
  161. HMPREF0526_1105
    • SHORT
  162. HMPREF0526_1130
    • SHORT
  163. HMPREF0526_1141
    • LONG
  164. HMPREF0526_1147-HMPREF0526_1148
    • Intergenic region with hits
  165. HMPREF0526_1150
    • LONG
  166. HMPREF0526_1154
    • LONG
  167. HMPREF0526_1156
    • SHORT
  168. HMPREF0526_1167
    • LONG
  169. HMPREF0526_1190
    • LONG
    • Overlap with HMPREF0526_1191(37)
  170. HMPREF0526_1191
    • Overlap with HMPREF0526_1190(37)
  171. HMPREF0526_1193
    • LONG
  172. HMPREF0526_1197
    • SHORT
  173. HMPREF0526_1197-HMPREF0526_1198
    • Intergenic region with hits
  174. HMPREF0526_1207
    • SHORT
  175. HMPREF0526_1216
    • LONG
  176. HMPREF0526_1232
    • LONG
  177. HMPREF0526_1241
    • SHORT
  178. HMPREF0526_1256
    • Overlap with HMPREF0526_1257(34)
  179. HMPREF0526_1257
    • Overlap with HMPREF0526_1256(34)
  180. HMPREF0526_1278-HMPREF0526_1280
    • Intergenic region with hits
  181. HMPREF0526_1280
    • SHORT
  182. HMPREF0526_1292-HMPREF0526_t0050
    • Intergenic region with hits
  183. HMPREF0526_1312-HMPREF0526_1313
    • Intergenic region with hits
  184. HMPREF0526_1322
    • LONG
  185. HMPREF0526_1326-HMPREF0526_1327
    • Intergenic region with hits
  186. HMPREF0526_1341
    • LONG
  187. HMPREF0526_1358
    • LONG
  188. HMPREF0526_1368
    • SHORT
  189. HMPREF0526_1370-HMPREF0526_1371
    • Intergenic region with hits
  190. HMPREF0526_1371
    • SHORT
  191. HMPREF0526_1397
  192. HMPREF0526_1398
  193. HMPREF0526_1414
    • LONG
  194. HMPREF0526_1421
    • SHORT
  195. HMPREF0526_1421-HMPREF0526_1422
    • Intergenic region with hits
  196. HMPREF0526_1424
    • LONG gene with <100 nt promoter
  197. HMPREF0526_1427
    • SHORT
  198. HMPREF0526_1428
  199. HMPREF0526_1429
  200. HMPREF0526_1450-HMPREF0526_1450
    • Intergenic region with hits
Click on an anomaly in the left bar to view the associated alignment.