Rhizobium leguminosarum bv. trifolii WSM1325, Contig 1170
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691 predicted CDSs,
9 long genes,
35 short genes,
6 broken genes,
7 interrupted genes,
73 intergenic regions with hits,
130 total anomalies.
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Gene prediction anomalies
Chart?chtt=&chs=400x180&chd=s:adbaaaa9&cht=p3&chl=long-1%%7cshort-5%%7cunique-2%%7cdubious-0%%7cbroken-0%%7cinterrupted-1%%7cambiguous-0%%7cok-91% 		Anomaly distribution
Chart?chtt=&chs=500x180&chd=s:gcef9&cht=p3&chl=long-6%%7cshort-26%%7cbroken-4%%7cinterrupted-5%%7cputative+missed-56%
Defectlist
Alns
  1. or6506-or6507
    • Intergenic region with hits
  2. or6507
    • SHORT
  3. or6510
    • Overlap with 2(666)
  4. 2
    • Overlap with or6510(666)
  5. or6512
    • SHORT
  6. or6523
    • SHORT
  7. or6524-or6525
    • Intergenic region with hits
  8. or6526-or6527
    • Intergenic region with hits
  9. or6527
    • Overlap with 6(90)
  10. 4
    • Overlap with or6527(174)
  11. 5
    • Overlap with or6527(112)
  12. 6
    • Overlap with or6527(90)
  13. or6528
    • Overlap with 9(123)
  14. 9
    • Overlap with or6528(123)
  15. or6531
    • Overlap with 12(448)
  16. 12
    • Overlap with or6531(448)
  17. or6533-13
    • Intergenic region with hits
  18. or6534
    • LONG
  19. or6537
    • Overlap with 15(1244)
  20. 15
    • Overlap with or6537(1244)
  21. or6538-or6539
    • Intergenic region with hits
  22. or6543
    • LONG gene with <100 nt promoter
  23. or6552-or6553
    • Intergenic region with hits
  24. or6556
    • Overlap with 18(71)
  25. 17
    • Overlap with or6556(419)
  26. 18
    • Overlap with or6556(71)
  27. or6560-or6561
    • Intergenic region with hits
  28. or6622-or6623
    • Intergenic region with hits
  29. or6623-or6624
    • Intergenic region with hits
  30. or6629
    • LONG
  31. 20
    • Overlap with or6635(249)
  32. or6639
    • Overlap with 22(747)
  33. 21
    • Overlap with or6639(1022)
  34. 22
    • Overlap with or6639(747)
  35. or6654-or6655
    • Intergenic region with hits
  36. or6657
    • Overlap with 23(316)
  37. 23
    • Overlap with or6657(316)
  38. or6660
    • Overlap with 24(322)
  39. 24
    • Overlap with or6660(322)
  40. or6663
    • SHORT
  41. or6663-25
    • Intergenic region with hits
  42. or6677
    • LONG
  43. or6679-or6680
    • Intergenic region with hits
  44. or6691-or6692
    • Intergenic region with hits
  45. or6694
    • Overlap with 27(139)
  46. 26
    • Overlap with or6694(183)
  47. 27
    • Overlap with or6694(139)
  48. or6699-or6700
    • Intergenic region with hits
  49. or6702
    • Interrupted gene with or6918 
  50. or6707
    • SHORT
  51. or6715
    • Overlap with 35(1106)
  52. 31
    • Overlap with or6715(1211)
  53. 32
    • Overlap with or6715(1199)
  54. 33
    • Overlap with or6715(1181)
  55. 34
    • Overlap with or6715(1178)
  56. 35
    • Overlap with or6715(1106)
  57. or6720
    • Overlap with 42(278)
  58. 42
    • Overlap with or6720(278)
  59. or6724-or6725
    • Intergenic region with hits
  60. or6729
    • Overlap with 45(698)
  61. 45
    • Overlap with or6729(698)
  62. or6730
    • Overlap with 46(627)
  63. 46
    • Overlap with or6730(627)
  64. or6736
    • Overlap with or6737(58)
  65. or6737
    • SHORT
    • Overlap with or6736(58)
  66. or6741-or6742
    • Intergenic region with hits
  67. or6743
    • LONG
  68. or6757
    • SHORT
  69. or6760
    • Overlap with 47(875)
  70. 47
    • Overlap with or6760(875)
  71. or6763-or6764
    • Intergenic region with hits
  72. or6774
    • Overlap with 48(35)
  73. 48
    • Overlap with or6774(35)
  74. 49
    • Overlap with or6777(2502)
  75. 50
    • Overlap with or6777(2096)
  76. 51
    • Overlap with or6777(1689)
  77. 52
    • Overlap with or6777(594)
  78. or6780
    • Overlap with 53(691)
  79. 53
    • Overlap with or6780(691)
  80. or6781
    • SHORT
  81. or6781-or6782
    • Intergenic region with hits
  82. or6783
    • SHORT
  83. or6785
    • SHORT
  84. or6791
    • Overlap with or6792(70)
  85. or6792
    • SHORT
    • Overlap with or6791(70)
  86. or6801-or6802
    • Intergenic region with hits
  87. or6803-or6804
    • Intergenic region with hits
  88. or6806-or6807
    • Intergenic region with hits
  89. or6809
    • SHORT gene with BLASTx hit
  90. or6809-54
    • Intergenic region with hits
  91. or6811-or6812
    • Intergenic region with hits
  92. or6820
    • SHORT
  93. or6825
    • Overlap with 55(71)
  94. 55
    • Overlap with or6825(71)
  95. or6829-or6830
    • Intergenic region with hits
  96. or6852
    • SHORT
  97. or6852-or6853
    • Intergenic region with hits
  98. or6853
    • Overlap with 60(63)
  99. 56
    • Overlap with or6853(80)
  100. 57
    • Overlap with or6853(77)
  101. 58
    • Overlap with or6853(74)
  102. 59
    • Overlap with or6853(71)
  103. 60
    • Overlap with or6853(63)
  104. or6854
    • Overlap with 66(128)
  105. 65
    • Overlap with or6854(308)
  106. 66
    • Overlap with or6854(128)
  107. 68
    • Overlap with or6855(792)
  108. or6859
    • Overlap with 69(309)
  109. 69
    • Overlap with or6859(309)
  110. or6866-or6867
    • Intergenic region with hits
  111. or6867-or6868
    • Intergenic region with hits
  112. or6872-or6875
    • Intergenic region with hits
  113. or6876
    • SHORT
    • Overlap with or6877(96)
  114. or6877
    • Overlap with or6876(96)
  115. or6879
    • Overlap with 70(841)
  116. 70
    • Overlap with or6879(841)
  117. or6882
    • Overlap with 71(87)
  118. 71
    • Overlap with or6882(87)
  119. or6883-or6884
    • Intergenic region with hits
  120. or6885-72
    • Intergenic region with hits
  121. or6889-or6890
    • Intergenic region with hits
  122. or6890-or6891
    • Intergenic region with hits
  123. or6892
    • Interrupted gene with or6929 
  124. or6893-or6894
    • Intergenic region with hits
  125. or6894
    • SHORT
  126. or6908
    • Overlap with or6909(58)
  127. or6907-or6909
    • Intergenic region with hits
  128. or6909
    • Interrupted gene with or6892 
    • Overlap with or6908(58)
  129. or6912
    • SHORT
  130. or6917
    • SHORT
  131. or6917-73
    • Intergenic region with hits
  132. or6918
    • Interrupted gene with or6702 
    • Overlap with 76(138)
  133. 74
    • Overlap with or6918(498)
  134. 75
    • Overlap with or6918(352)
  135. 76
    • Overlap with or6918(138)
  136. or6919-or6920
    • Intergenic region with hits
  137. or6920-or6922
    • Intergenic region with hits
  138. or6922
    • Overlap with or6923(60)
  139. 77
    • Overlap with or6922(257)
  140. or6923
    • Overlap with or6922(60)
  141. or6924-or6925
    • Intergenic region with hits
  142. or6926
    • SHORT
  143. or6926-or6927
    • Intergenic region with hits
  144. or6927-or6928
    • Intergenic region with hits
  145. or6929
    • Interrupted gene with or6892 
  146. or6929-or6930
    • Intergenic region with hits
  147. or6930-or6931
    • Intergenic region with hits
  148. or6937
  149. or6937-or6938
    • Intergenic region with hits
  150. or6938
  151. or6938-or6939
    • Intergenic region with hits
  152. or6940
    • SHORT
    • Overlap with or6941(33)
  153. or6941
    • Overlap with or6942(40)
  154. or6942
    • Overlap with or6941(40)
  155. or6947
    • SHORT
  156. or6947-or6948
    • Intergenic region with hits
  157. or6950
  158. or6950-or6951
    • Intergenic region with hits
  159. or6951
  160. or6953-or6954
    • Intergenic region with hits
  161. or6955
    • SHORT
  162. or6956
    • SHORT
  163. or6962-or6963
    • Intergenic region with hits
  164. or6967-or6968
    • Intergenic region with hits
  165. or6968-or6969
    • Intergenic region with hits
  166. or6972
    • SHORT
  167. or6973-or6974
    • Intergenic region with hits
  168. or6975
    • SHORT
  169. or6975-or6976
    • Intergenic region with hits
  170. or6976-or6977
    • Intergenic region with hits
  171. or6980
    • Overlap with 84(852)
  172. 80
    • Overlap with or6980(2562)
  173. 81
    • Overlap with or6980(1271)
  174. 82
    • Overlap with or6980(1248)
  175. 83
    • Overlap with or6980(1233)
  176. 84
    • Overlap with or6980(852)
  177. or6981-or6982
    • Intergenic region with hits
  178. or6996
    • LONG
  179. or6997-or6998
    • Intergenic region with hits
  180. or7012-or7013
    • Intergenic region with hits
  181. or7013
    • SHORT
  182. or7019
    • Overlap with 89(202)
  183. 89
    • Overlap with or7019(202)
  184. or7021
    • Overlap with 90(566)
  185. 90
    • Overlap with or7021(566)
  186. or7026-or7027
    • Intergenic region with hits
  187. or7033-or7034
    • Intergenic region with hits
  188. or7034
    • SHORT
  189. or7045
    • LONG
  190. or7045-or7046
    • Intergenic region with hits
  191. or7047
    • Overlap with 93(188)
  192. 91
    • Overlap with or7047(392)
  193. 92
    • Overlap with or7047(353)
  194. 93
    • Overlap with or7047(188)
  195. or7048
    • SHORT
  196. or7055-or7056
    • Intergenic region with hits
  197. or7056
    • Overlap with 98(1526)
  198. 96
    • Overlap with or7056(1647)
  199. 97
    • Overlap with or7056(1608)
  200. 98
    • Overlap with or7056(1526)
  201. or7059
    • LONG
  202. or7061-or7062
    • Intergenic region with hits
  203. or7062
    • SHORT
  204. or7063-or7065
    • Intergenic region with hits
  205. or7066
    • LONG
    • Overlap with 101(54)
  206. 99
    • Overlap with or7066(1047)
  207. 100
    • Overlap with or7066(156)
  208. 101
    • Overlap with or7066(54)
  209. or7067
    • Overlap with 105(1746)
  210. 103
    • Overlap with or7067(2029)
  211. 104
    • Overlap with or7067(1965)
  212. 105
    • Overlap with or7067(1746)
  213. or7074-or7076
    • Intergenic region with hits
  214. or7079-or7080
    • Intergenic region with hits
  215. or7081
    • SHORT
  216. or7081-or7082
    • Intergenic region with hits
  217. or7083
    • SHORT
  218. or7083-or7084
    • Intergenic region with hits
  219. or7087
    • Overlap with 106(1295)
  220. 106
    • Overlap with or7087(1295)
  221. or7091
    • SHORT
  222. or7099-or7100
    • Intergenic region with hits
  223. or7103-or7104
    • Intergenic region with hits
  224. or7104
  225. or7105
  226. or7106
    • Overlap with 108(279)
  227. 107
    • Overlap with or7106(525)
  228. 108
    • Overlap with or7106(279)
  229. or7117-or7118
    • Intergenic region with hits
  230. or7120-or7121
    • Intergenic region with hits
  231. or7122
    • Overlap with 110(987)
  232. 109
    • Overlap with or7122(1611)
  233. 110
    • Overlap with or7122(987)
  234. or7126-or7127
    • Intergenic region with hits
  235. or7127-or7128
    • Intergenic region with hits
  236. or7128
    • SHORT
  237. or7131
    • Overlap with 111(479)
  238. 111
    • Overlap with or7131(479)
  239. or7138
    • Overlap with or7139(31)
  240. or7139
    • Overlap with or7138(31)
  241. or7139-or7141
    • Intergenic region with hits
  242. or7141
    • SHORT
  243. or7143
    • Overlap with 112(1370)
  244. 112
    • Overlap with or7143(1370)
  245. or7145
    • Overlap with 113(969)
  246. 113
    • Overlap with or7145(969)
  247. or7146
    • SHORT
    • Overlap with 115(800)
  248. 115
    • Overlap with or7146(800)
Click on an anomaly in the left bar to view the associated alignment.