Staphylococcus aureus
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2749 predicted CDSs,
3 long genes,
63 short genes,
132 broken genes,
111 interrupted genes,
118 intergenic regions with hits,
427 total anomalies.
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View pseudogenes 		Gene prediction anomalies
Chart?chtt=&chs=400x180&chd=s:abaacca9&cht=p3&chl=long-0%%7cshort-2%%7cunique-0%%7cdubious-0%%7cbroken-4%%7cinterrupted-4%%7cambiguous-0%%7cok-90% 		Anomaly distribution
Chart?chtt=&chs=500x180&chd=s:ac9y2&cht=p3&chl=long-0%%7cshort-14%%7cbroken-30%%7cinterrupted-25%%7cputative+missed-27%
Defectlist
Alns
  1. or0-or0001
    • Intergenic region with hits
  2. or0014
    • From AutoQA
  3. or0015
    • SHORT
  4. or0024-or0025
    • Intergenic region with hits
  5. or0042-or0043
    • Intergenic region with hits
  6. or0043
    • From AutoQA
  7. or0078
    • SHORT
  8. or0099-or0100
    • Intergenic region with hits
  9. or0120
  10. or0121
  11. or0143
  12. or0144
  13. or0145
    • SHORT
  14. or0158-or0159
    • Intergenic region with hits
  15. or0159
    • From AutoQA
  16. or0163
    • SHORT
  17. or0-or0168
    • Intergenic region with hits
  18. or0168
    • SHORT
  19. or0168-or0168
    • Intergenic region with hits
  20. or0175
    • SHORT
  21. or0180-or0182
    • Intergenic region with hits
  22. or0182-or0201
    • Intergenic region with hits
  23. or0192
    • Broken gene with or0192  or0193 
    • Interrupted gene with or0193 
    • Overlap with or0193(34)
  24. or0193
    • Broken gene with or0192  or0193 
    • Interrupted gene with or0192 
    • Overlap with or0192(34)
  25. or0213-or0214
    • Intergenic region with hits
  26. or0220
  27. or0221
  28. or0238
  29. or0239
  30. or0247
    • From AutoQA
  31. or0256-or0256
    • Intergenic region with hits
  32. or0273
    • From AutoQA
  33. or0276
    • SHORT
  34. or0277
    • SHORT
  35. or0311-or0312
    • Intergenic region with hits
  36. or0313
  37. or0314
  38. or0355
  39. or0356
  40. or0377
  41. or0377-or0378
    • Intergenic region with hits
  42. or0382
  43. or0383
  44. or0384
    • SHORT
  45. or0402
    • Overlap with or0403(31)
  46. or0403
    • Overlap with or0402(31)
  47. or0416
  48. or0416-or0417
    • Intergenic region with hits
  49. or0417
  50. or0419-or0420
    • Intergenic region with hits
  51. or0426
  52. or0427
  53. or0439-or0439
    • Intergenic region with hits
  54. or0442
    • From AutoQA
  55. or0-or0461
    • Intergenic region with hits
  56. -
    • Intergenic region with hits
  57. -
    • Intergenic region with hits
  58. or0-or0473
    • Intergenic region with hits
  59. or0474
    • From AutoQA
  60. or0486
    • SHORT
  61. or0486-or0486
    • Intergenic region with hits
  62. or0495
  63. or0495-or0496
    • Intergenic region with hits
  64. or0496
  65. or0507
    • SHORT
  66. or0525
    • From AutoQA
  67. or0529
  68. or0529-or0530
    • Intergenic region with hits
  69. or0530
  70. or0540-or0541
    • Intergenic region with hits
  71. -
    • Intergenic region with hits
  72. or0554
    • SHORT
  73. or0555
    • From AutoQA
  74. or0555-or0555
    • Intergenic region with hits
  75. or0595
    • From AutoQA
  76. or0602
  77. or0603
  78. or0636-or0637
    • Intergenic region with hits
  79. or0641
    • SHORT
  80. or0660-or0661
    • Intergenic region with hits
  81. or0680
  82. or0681
  83. or0684-or0685
    • Intergenic region with hits
  84. or0686
  85. or0686-or0687
    • Intergenic region with hits
  86. or0687
  87. or0691
    • SHORT
  88. or0-or0693
    • Intergenic region with hits
  89. or0693
    • From AutoQA
  90. or0694-or0694
    • Intergenic region with hits
  91. or0699-or0699
    • Intergenic region with hits
  92. or0726-or0727
    • Intergenic region with hits
  93. or0742
    • From AutoQA
  94. or0743-or0744
    • Intergenic region with hits
  95. or0755-or0756
    • Intergenic region with hits
  96. or0757
  97. or0757-or0758
    • Intergenic region with hits
  98. or0758
  99. or0775
  100. or0776
  101. or0783
  102. or0830-or0831
    • Intergenic region with hits
  103. or0840
    • Overlap with or0839(13)
  104. or0865
    • SHORT
  105. or0884
  106. or0885
  107. or0891-or0892
    • Intergenic region with hits
  108. or0892-or0893
    • Intergenic region with hits
  109. or0896
  110. or0897
  111. or0908
    • SHORT
  112. or0909
  113. or0910
  114. or0918-or0919
    • Intergenic region with hits
  115. or0919
  116. or0920
  117. or0921
  118. or0922
  119. or0951
    • From AutoQA
  120. or0955
  121. or0956
  122. or0960-or0961
    • Intergenic region with hits
  123. or0961
  124. or0962
  125. or0977
    • From AutoQA
  126. or0996
    • SHORT
  127. or0996-or0997
    • Intergenic region with hits
  128. or1006
    • SHORT
  129. or1015
  130. or1015-or1016
    • Intergenic region with hits
  131. or1016
  132. or1033
  133. or1034
  134. or1037
    • From AutoQA
  135. or1063
    • SHORT
  136. or1063-or1064
    • Intergenic region with hits
  137. or1070
  138. or1070-or1071
    • Intergenic region with hits
  139. or1071
  140. or1085
  141. or1085-or1086
    • Intergenic region with hits
  142. or1086
  143. or1113
    • SHORT
  144. or1116
    • SHORT
  145. or0-or1151
    • Intergenic region with hits
  146. or1159
  147. or1160
  148. or1172
  149. or1172-or1173
    • Intergenic region with hits
  150. or1173
  151. or1176
    • Overlap with or1177(31)
  152. or1177
    • Overlap with or1176(31)
  153. or1223
  154. or1224
  155. -
    • Intergenic region with hits
  156. or0-or1276
    • Intergenic region with hits
  157. or1279-or1280
    • Intergenic region with hits
  158. or1286
    • Overlap with or1287(37)
  159. or1287
    • Overlap with or1286(37)
  160. or1291-or1292
    • Intergenic region with hits
  161. or1301
    • From AutoQA
  162. or1326
    • SHORT
  163. or1341
    • SHORT
  164. or1347
    • From AutoQA
  165. or1356
    • SHORT
  166. or1399-or1400
    • Intergenic region with hits
  167. or1400-or1401
    • Intergenic region with hits
  168. or1403-or1403
    • Intergenic region with hits
  169. -
    • Intergenic region with hits
  170. -
    • Intergenic region with hits
  171. or0-or1407
    • Intergenic region with hits
  172. or0-or1410
    • Intergenic region with hits
  173. or1410
  174. or1411
  175. or1422-or1423
    • Intergenic region with hits
  176. or1428
  177. or1429
  178. or1430-or1430
    • Intergenic region with hits
  179. or0-or1432
    • Intergenic region with hits
  180. or1439
  181. or1439-or1440
    • Intergenic region with hits
  182. or1440
  183. or1446
  184. or1447
  185. or1448
    • SHORT
  186. or1459-or1460
    • Intergenic region with hits
  187. or1463
    • Overlap with or1462(43)
  188. or1473
  189. or1473-or1474
    • Intergenic region with hits
  190. or1474
  191. or1483
    • Broken gene with or1483  or1484 
    • Interrupted gene with or1484 
    • Overlap with or1484(37)
  192. or1484
    • Broken gene with or1483  or1484 
    • Interrupted gene with or1483 
    • Overlap with or1483(37)
  193. or1504
    • From AutoQA
  194. or1508
    • SHORT
  195. or1508-or1509
    • Intergenic region with hits
  196. or1519-or1520
    • Intergenic region with hits
  197. or1533
    • SHORT
  198. or1575
  199. or1576
  200. or1583
    • SHORT
  201. or1583-or1584
    • Intergenic region with hits
  202. or1642
    • SHORT
    • Interrupted gene with or1644 
  203. or1643-or1644
    • Intergenic region with hits
  204. or1645-or1646
    • Intergenic region with hits
  205. or1646
    • LONG
  206. or1671-or1671
    • Intergenic region with hits
  207. or1673
    • SHORT
  208. or1676
    • SHORT
  209. or1680-or1681
    • Intergenic region with hits
  210. or1692
    • SHORT
  211. or1696
    • Overlap with or1697(40)
  212. or1697
    • Broken gene with or1697  or1698 
    • Overlap with or1696(40)
  213. or1698
  214. or1702-or1702
    • Intergenic region with hits
  215. or1704
    • SHORT
  216. or1732
  217. or1733
  218. -
    • Intergenic region with hits
  219. or0-or1755
    • Intergenic region with hits
  220. or1755-or1756
    • Intergenic region with hits
  221. or1757
    • SHORT
  222. or1757-or1757
    • Intergenic region with hits
  223. -
    • Intergenic region with hits
  224. or1763
    • SHORT
  225. or1773
    • SHORT
  226. or1775
  227. or1776
  228. or1791
    • From AutoQA
  229. or1791-or1792
    • Intergenic region with hits
  230. or1807
  231. or1808
  232. or1812-or1813
    • Intergenic region with hits
  233. or1819
    • SHORT
  234. or1819-or1820
    • Intergenic region with hits
  235. or1898
  236. or1899
  237. or1902
  238. or1903
  239. or1915
    • SHORT
  240. or1915-or1915
    • Intergenic region with hits
  241. or1933-or1934
    • Intergenic region with hits
  242. -
    • Intergenic region with hits
  243. or0-or1938
    • Intergenic region with hits
  244. or1941
    • From AutoQA
  245. or1951
    • LONG
  246. or1958
  247. or1959
  248. or0-or1975
    • Intergenic region with hits
  249. -
    • Intergenic region with hits
  250. -
    • Intergenic region with hits
  251. or0-or1979
    • Intergenic region with hits
  252. or1990
    • From AutoQA
  253. -
    • Intergenic region with hits
  254. or2021
  255. or2022
  256. or2057
  257. or2058
  258. or2073
    • SHORT
  259. or2087
    • SHORT
  260. or2091
    • SHORT
  261. or2115-or2116
    • Intergenic region with hits
  262. or2116-or2116
    • Intergenic region with hits
  263. or2142
  264. or2142-or2143
    • Intergenic region with hits
  265. or2143
  266. or2178
  267. or2179
  268. or2189
    • SHORT
  269. or2190-or2191
    • Intergenic region with hits
  270. or2215
  271. or2216
  272. or2236
    • SHORT
  273. or2236-or2236
    • Intergenic region with hits
  274. -
    • Intergenic region with hits
  275. or2243
    • SHORT
  276. or2251-or2252
    • Intergenic region with hits
  277. or2269
    • SHORT
  278. or2289
    • SHORT
  279. or2289-or2290
    • Intergenic region with hits
  280. or2306
  281. or2307
  282. or2316
    • LONG
  283. or2317
  284. or2318
    • Broken gene with or2317  or2318 
    • Interrupted gene with or2317 
    • Overlap with or2319(31)
  285. or2319
    • Overlap with or2318(31)
  286. or2325
    • From AutoQA
  287. or2327-or2328
    • Intergenic region with hits
  288. or2329
    • SHORT
  289. or2348
  290. or2349
  291. or2356
  292. or2356-or2357
    • Intergenic region with hits
  293. or2357
  294. or2361
    • From AutoQA
  295. or2369
  296. or2369-or2370
    • Intergenic region with hits
  297. or2370
  298. or2381
  299. or2382
  300. or2383
  301. or2383-or2384
    • Intergenic region with hits
  302. or2384
  303. or2398
    • SHORT
  304. or2398-or2398
    • Intergenic region with hits
  305. or2428
    • Broken gene with or2428  or2429 
    • Interrupted gene with or2429 
    • Overlap with or2429(37)
  306. or2429
    • Broken gene with or2428  or2429 
    • Interrupted gene with or2428 
    • Overlap with or2428(37)
  307. or2437
    • From AutoQA
  308. or2461-or2462
    • Intergenic region with hits
  309. or2518
    • SHORT gene with BLASTx hit
  310. or2529
    • SHORT
  311. or2531
    • SHORT
  312. or2535
    • Overlap with or2536(22)
  313. or2536
    • Overlap with or2535(22)
  314. or2550
    • SHORT
  315. or2559
    • SHORT
  316. or2567-or2567
    • Intergenic region with hits
  317. or2572
  318. or2572-or2573
    • Intergenic region with hits
  319. or2573
  320. or2596-or2597
    • Intergenic region with hits
  321. or2636
  322. or2636-or2637
    • Intergenic region with hits
  323. or2637
  324. or2638
  325. or2639
  326. or2653-or2654
    • Intergenic region with hits
  327. or2660
    • SHORT
  328. or2688
  329. or2689
  330. or2690
    • SHORT
  331. or2691-or2691
    • Intergenic region with hits
  332. or0-or2693
    • Intergenic region with hits
  333. or2693
    • SHORT
  334. or2693-or2693
    • Intergenic region with hits
  335. -
    • Intergenic region with hits
  336. or0-or2695
    • Intergenic region with hits
  337. or2720
    • From AutoQA
  338. or2727
    • From AutoQA
  339. or2742
  340. or2743
  341. or2764
    • SHORT
  342. or2766
  343. or2767
  344. or2802
  345. or2803
  346. or2804
    • SHORT
  347. or2813
    • SHORT
  348. or2836
    • Overlap with or2837(37)
  349. or2837-or2838
    • Intergenic region with hits
  350. or2874
    • SHORT
  351. or2880
    • SHORT
  352. or2885
    • SHORT
  353. or2886-or2887
    • Intergenic region with hits
  354. or2887-or2888
    • Intergenic region with hits
  355. or2888
  356. or2890
    • SHORT
Click on an anomaly in the left bar to view the associated alignment.