Spirochaeta caldaria DSM 7334, Contig 91
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2871 predicted CDSs,
60 long genes,
65 short genes,
36 broken genes,
20 interrupted genes,
133 intergenic regions with hits,
314 total anomalies.
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View pseudogenes 		Gene prediction anomalies
Chart?chtt=&chs=400x180&chd=s:bbfaaaa9&cht=p3&chl=long-2%%7cshort-2%%7cunique-8%%7cdubious-0%%7cbroken-1%%7cinterrupted-0%%7cambiguous-0%%7cok-87% 		Anomaly distribution
Chart?chtt=&chs=500x180&chd=s:bdpi9&cht=p3&chl=long-19%%7cshort-20%%7cbroken-11%%7cinterrupted-6%%7cputative+missed-42%
Defectlist
Alns
  1. or0005-or0006
    • Intergenic region with hits
  2. or0006
    • SHORT
  3. or0006-or0007
    • Intergenic region with hits
  4. or0019
    • SHORT
  5. or0019-or0021
    • Intergenic region with hits
  6. or0026-or0027
    • Intergenic region with hits
  7. or0027
    • LONG
  8. or0050-or0053
    • Intergenic region with hits
  9. or0074
    • SHORT
  10. or0079
  11. or0080
  12. or0080-or0083
    • Intergenic region with hits
  13. or0085
    • LONG gene with <100 nt promoter
  14. or0097
    • SHORT
  15. or0097-or0098
    • Intergenic region with hits
  16. or0101
  17. or0102
  18. or0112
    • LONG
  19. or0114-or0115
    • Intergenic region with hits
  20. or0121
    • LONG
  21. or0141
    • Overlap with or0142(40)
  22. or0142
    • LONG
    • Overlap with or0141(40)
  23. or0158
    • LONG
  24. or0170
    • LONG
  25. or0183-or0185
    • Intergenic region with hits
  26. or0195-or0197
    • Intergenic region with hits
  27. or0197
    • LONG
  28. or0226
    • LONG
  29. or0239-or0241
    • Intergenic region with hits
  30. or0246
    • LONG
  31. or0247
    • SHORT
  32. or0258
    • LONG
  33. or0259
    • LONG
  34. or0262-or0264
    • Intergenic region with hits
  35. or0264-or0269
    • Intergenic region with hits
  36. or0270-or0271
    • Intergenic region with hits
  37. or0275-or0276
    • Intergenic region with hits
  38. or0279-RNA_1
    • Intergenic region with hits
  39. or0282
  40. or0283
  41. or0292
    • LONG
  42. or0297
    • LONG
  43. or0299
    • Overlap with or0300(52)
  44. or0300
    • Overlap with or0299(52)
  45. or0306
    • LONG
  46. or0324
    • SHORT
  47. or0341
    • Overlap with or0342(52)
  48. or0342
    • Overlap with or0341(52)
  49. or0362
    • SHORT
  50. or0404-or0405
    • Intergenic region with hits
  51. or0419-or0420
    • Intergenic region with hits
  52. or0431-or0433
    • Intergenic region with hits
  53. or0437-or0439
    • Intergenic region with hits
  54. or0439
    • LONG
  55. Newfeat8-or0442
    • Intergenic region with hits
  56. or0447
    • LONG
  57. or0455
    • LONG
  58. or0469
    • SHORT
  59. or0497
    • SHORT
    • Overlap with or0498(84)
  60. or0498
    • Overlap with or0497(84)
  61. or0498-or0500
    • Intergenic region with hits
  62. or0512-or0514
    • Intergenic region with hits
  63. or0528-or0529
    • Intergenic region with hits
  64. or0533-or0534
    • Intergenic region with hits
  65. or0535
    • SHORT
  66. or0561-or0563
    • Intergenic region with hits
  67. or0582-or0584
    • Intergenic region with hits
  68. or0584-or0585
    • Intergenic region with hits
  69. or0585
    • SHORT
  70. or0586
  71. or0587
  72. or0588
  73. or0588-or0589
    • Intergenic region with hits
  74. or0589
  75. or0593
    • SHORT
  76. or0601
    • Broken gene with or0601  or0602 
    • Overlap with or0602(43)
  77. or0602
    • Broken gene with or0601  or0602 
    • Overlap with or0601(43)
  78. or0605-or0606
    • Intergenic region with hits
  79. or0606
    • SHORT
  80. or0606-or0607
    • Intergenic region with hits
  81. or0607
    • LONG
  82. or0608-or0609
    • Intergenic region with hits
  83. or0610-or0611
    • Intergenic region with hits
  84. or0612
  85. or0613
  86. or0614
  87. or0614-or0615
    • Intergenic region with hits
  88. or0617
    • LONG
  89. or0649-or0651
    • Intergenic region with hits
  90. or0658-or0661
    • Intergenic region with hits
  91. or0670
    • LONG
  92. or0685-or0687
    • Intergenic region with hits
  93. or0698-or0699
    • Intergenic region with hits
  94. or0705
    • SHORT
  95. or0715
  96. or0716
  97. or0718
    • SHORT
  98. or0741
    • LONG
  99. or0744-or0747
    • Intergenic region with hits
  100. or0754
    • LONG
  101. or0759
    • LONG
  102. or0787-or0789
    • Intergenic region with hits
  103. RNA_13-or0810
    • Intergenic region with hits
  104. or0823-or0825
    • Intergenic region with hits
  105. or0845-or0847
    • Intergenic region with hits
  106. or0848
    • SHORT
  107. or0849
    • LONG
  108. or0864-or0866
    • Intergenic region with hits
  109. or0895-or0896
    • Intergenic region with hits
  110. or0902
    • SHORT
  111. or0902-or0904
    • Intergenic region with hits
  112. or0906-or0907
    • Intergenic region with hits
  113. or0907-or0910
    • Intergenic region with hits
  114. or0912
    • LONG gene with <100 nt promoter
  115. or0922
    • LONG
  116. or0932-or0933
    • Intergenic region with hits
  117. or0951
    • SHORT
  118. or0951-or0952
    • Intergenic region with hits
  119. or0971
    • LONG
  120. or1006-or1007
    • Intergenic region with hits
  121. or1007
    • SHORT
  122. Newfeat10-or1011
    • Intergenic region with hits
  123. or1012
    • LONG
  124. or1045
    • SHORT
  125. or1055
    • SHORT
  126. or1063-or1072
    • Intergenic region with hits
  127. or1080-or1081
    • Intergenic region with hits
  128. or1081
    • SHORT
  129. or1081-or1082
    • Intergenic region with hits
  130. or1102
    • SHORT
  131. or1109
    • LONG
  132. or1118
    • SHORT
  133. or1119
    • LONG
  134. or1131-or1133
    • Intergenic region with hits
  135. or1138
    • SHORT
  136. or1148-RNA_17
    • Intergenic region with hits
  137. or1152-or1155
    • Intergenic region with hits
  138. or1157-or1158
    • Intergenic region with hits
  139. or1158
    • SHORT
  140. or1195-or1196
    • Intergenic region with hits
  141. or1221
    • LONG
  142. or1230-or1232
    • Intergenic region with hits
  143. or1257
    • Overlap with or1258(31)
  144. or1258
    • LONG
    • Overlap with or1257(31)
  145. or1272
    • LONG gene with <100 nt promoter
  146. or1272-or1274
    • Intergenic region with hits
  147. or1275-or1278
    • Intergenic region with hits
  148. or1308
    • LONG
  149. or1315
    • LONG
  150. or1318-or1320
    • Intergenic region with hits
  151. or1321-or1322
    • Intergenic region with hits
  152. or1322
    • SHORT
  153. or1336
    • Overlap with or1337(31)
  154. or1337
    • LONG
    • Overlap with or1336(31)
  155. or1341
    • Overlap with or1342(39)
  156. or1342
    • Overlap with or1341(39)
  157. or1361
    • LONG
  158. or1379-or1381
    • Intergenic region with hits
  159. or1404
    • LONG
  160. or1409-or1410
    • Intergenic region with hits
  161. or1426-or1428
    • Intergenic region with hits
  162. or1435
    • SHORT
  163. or1444
    • SHORT
  164. or1461-or1462
    • Intergenic region with hits
  165. or1479-or1480
    • Intergenic region with hits
  166. or1480
    • SHORT
  167. or1483-or1487
    • Intergenic region with hits
  168. or1540
    • LONG gene with <100 nt promoter
  169. or1562-or1564
    • Intergenic region with hits
  170. or1565-or1567
    • Intergenic region with hits
  171. or1579
    • SHORT
  172. or1583
    • Overlap with or1584(49)
  173. or1584
    • Overlap with or1583(49)
  174. or1587
    • SHORT
  175. or1589-or1591
    • Intergenic region with hits
  176. or1619
    • SHORT
  177. or1631
    • LONG
  178. or1659-or1662
    • Intergenic region with hits
  179. or1679
    • LONG
    • Overlap with or1680(61)
  180. or1680
    • Overlap with or1679(61)
  181. or1702
    • SHORT
  182. or1709
    • LONG
  183. or1730-or1731
    • Intergenic region with hits
  184. or1732-or1735
    • Intergenic region with hits
  185. or1735-or1736
    • Intergenic region with hits
  186. or1755-or1757
    • Intergenic region with hits
  187. or1765
    • LONG
  188. or1772-or1774
    • Intergenic region with hits
  189. or1793-or1794
    • Intergenic region with hits
  190. or1794
    • SHORT
  191. or1794-or1795
    • Intergenic region with hits
  192. or1796-or1798
    • Intergenic region with hits
  193. or1798
    • SHORT
  194. or1798-or1799
    • Intergenic region with hits
  195. or1799
  196. or1800
  197. or1829
    • SHORT
  198. or1843
  199. or1852-or1856
    • Intergenic region with hits
  200. or1867-or1868
    • Intergenic region with hits
  201. or1868
    • SHORT
  202. or1881-or1882
    • Intergenic region with hits
  203. or1885-or1886
    • Intergenic region with hits
  204. or1900
    • LONG gene with <100 nt promoter
  205. or1913-or1915
    • Intergenic region with hits
  206. or1919-or_CrispR1
    • Intergenic region with hits
  207. or_CrispR1
    • CrispR or_CrispR1 CRISPR + 2125870 2128330 rpt_unit_range="2125870..2125904"
  208. or_CrispR1-or_CrispR2
    • Intergenic region with hits
  209. or_CrispR2
    • CrispR or_CrispR2 CRISPR + 2128500 2129407 rpt_unit_range="2128500..2128533"
  210. or1921-or_CrispR3
    • Intergenic region with hits
  211. or_CrispR3
    • CrispR or_CrispR3 CRISPR + 2131302 2133630 rpt_unit_range="2131302..2131335"
  212. or1931
    • LONG
  213. or1931-or1932
    • Intergenic region with hits
  214. or1932-or1933
    • Intergenic region with hits
  215. or1933
    • SHORT
  216. or1954-or1957
    • Intergenic region with hits
  217. or1961
    • LONG
  218. or1977-or1978
    • Intergenic region with hits
  219. or1988
    • LONG
  220. or2019-or2020
    • Intergenic region with hits
  221. or2047-or2049
    • Intergenic region with hits
  222. or2051
    • Overlap with or2052(61)
  223. or2082
    • Interrupted gene with or2084 
  224. or2084
    • Interrupted gene with or2082 
  225. or2085
    • SHORT
  226. or2102-or2106
    • Intergenic region with hits
  227. or2113-or2115
    • Intergenic region with hits
  228. or2124-or2125
    • Intergenic region with hits
  229. or2125-or2127
    • Intergenic region with hits
  230. or2130
    • Overlap with or2131(34)
  231. or2131
    • Overlap with or2130(34)
  232. or2155
    • Overlap with or2156(64)
  233. or2156
    • Overlap with or2157(34)
  234. or2157
    • Overlap with or2156(34)
  235. or2173
    • SHORT
  236. or2173-or2174
    • Intergenic region with hits
  237. or2177
    • Interrupted gene with or2180 
  238. or2178
  239. or2179
  240. or2180
    • Interrupted gene with or2177 
  241. or2181
    • LONG
  242. or2182
    • SHORT
  243. or2183-or2184
    • Intergenic region with hits
  244. or2184
    • SHORT
  245. or2187
    • Interrupted gene with or2189 
  246. or2187-or2188
    • Intergenic region with hits
  247. or2189
    • Interrupted gene with or2187 
  248. or2190-or2196
    • Intergenic region with hits
  249. or2202
    • SHORT
  250. or2207
    • SHORT
  251. or2211
  252. or2212
  253. or2230
    • Overlap with or2231(31)
  254. or2231
    • SHORT
    • Overlap with or2230(31)
  255. or2231-or2233
    • Intergenic region with hits
  256. or2234-or2235
    • Intergenic region with hits
  257. or2247
    • SHORT
  258. or2260-or2261
    • Intergenic region with hits
  259. or2261
    • SHORT
  260. or2269
  261. or2270
  262. or2270-or2271
    • Intergenic region with hits
  263. or2277
    • SHORT
  264. or2279-or2282
    • Intergenic region with hits
  265. or2291
    • LONG
  266. or2305-or2307
    • Intergenic region with hits
  267. or2308-or2309
    • Intergenic region with hits
  268. or2310-or2311
    • Intergenic region with hits
  269. or2312-or2315
    • Intergenic region with hits
  270. or2322
    • Overlap with or2323(43)
  271. or2323
    • Overlap with or2322(43)
  272. or2333
    • LONG
  273. or2337
    • SHORT
  274. or2352
    • SHORT
  275. or2362-or2363
    • Intergenic region with hits
  276. or2378
    • Overlap with or2379(51)
  277. or2379
    • Overlap with or2378(51)
  278. or2399-or2400
    • Intergenic region with hits
  279. or2411
    • SHORT
  280. or2418
    • LONG
  281. or2440-or2442
    • Intergenic region with hits
  282. or2443-or2445
    • Intergenic region with hits
  283. or2449
    • SHORT
  284. or2458
  285. or2459
  286. or2461
  287. or2462
  288. or2463-or2464
    • Intergenic region with hits
  289. or2464
  290. or2464-or2465
    • Intergenic region with hits
  291. or2465
  292. or2471-or2473
    • Intergenic region with hits
  293. or2484-or2486
    • Intergenic region with hits
  294. or2492
    • SHORT
  295. or2518
    • LONG
  296. or2531
    • LONG
    • Overlap with or2532(37)
  297. or2532
    • Overlap with or2531(37)
  298. or2533-or2535
    • Intergenic region with hits
  299. or2535
    • Broken gene with or2535  or2536 
    • Overlap with or2536(61)
  300. or2536
    • Broken gene with or2535  or2536 
    • Overlap with or2535(61)
  301. or2553
    • SHORT
  302. or2562-or2563
    • Intergenic region with hits
  303. or2563
    • SHORT
  304. or2567
    • LONG
  305. or2567-or2568
    • Intergenic region with hits
  306. or2572
    • LONG
  307. or2591
    • SHORT
  308. or2607
    • SHORT
  309. or2607-or2608
    • Intergenic region with hits
  310. or2611
    • Overlap with or2612(188)
  311. or2612
    • Overlap with or2611(188)
  312. or2611-or2613
    • Intergenic region with hits
  313. or2613
    • SHORT
    • Overlap with or2614(43)
  314. or2614
    • Overlap with or2615(64)
  315. or2615
    • Overlap with or2614(64)
  316. or2619
    • SHORT
  317. or2627-or2629
    • Intergenic region with hits
  318. or2648
    • LONG
  319. or2651-or2653
    • Intergenic region with hits
  320. or2679
    • LONG
  321. or2691
    • SHORT
  322. or2714
    • SHORT
  323. or2728
    • LONG
  324. or2754
    • SHORT
  325. or2775
    • Overlap with or2776(31)
  326. or2776
    • Overlap with or2775(31)
  327. or2788
    • LONG
  328. or2804-or2806
    • Intergenic region with hits
  329. or2830
    • SHORT
  330. or2841
  331. or2842
  332. or2859
    • Overlap with or2860(31)
  333. or2860
    • Overlap with or2859(31)
  334. or2871
    • SHORT
  335. or2871-or2872
    • Intergenic region with hits
  336. or2873-or2874
    • Intergenic region with hits
Click on an anomaly in the left bar to view the associated alignment.